Guide to the Human Genome
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Name: LOC100288637 Sequence: fasta or formatted (101aa) NCBI GI: 239745136
Description:

PREDICTED: hypothetical protein XP_002343400

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         11           2
 C cysteine            3.0          3           2
 D aspartate           5.0          5           1
 E glutamate           4.0          4           1
 F phenylalanine       2.0          2           1
 G glycine             6.9          7           1
 H histidine           6.9          7           1
 I isoleucine          1.0          1           1
 K lysine              0.0          0           0
 L leucine            13.9         14           2
 M methionine          3.0          3           1
 N asparagine          1.0          1           1
 P proline            11.9         12           2
 Q glutamine           2.0          2           1
 R arginine            5.9          6           1
 S serine              7.9          8           2
 T threonine           4.0          4           1
 V valine              9.9         10           2
 W tryptophan          1.0          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343400 
LOC100291825          1.000   PREDICTED: similar to hCG1982161 
LOC100290512          1.000   PREDICTED: hypothetical protein XP_002347561 
OTUD7A                0.417   OTU domain containing 7A 
OTUD7B                0.171   zinc finger protein Cezanne 
TNK2                  0.027   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.027   tyrosine kinase, non-receptor, 2 isoform 2 
SPATC1                0.021   spermatogenesis and centriole associated 1 isoform ...
SPATC1                0.021   spermatogenesis and centriole associated 1 isoform ...
RHOBTB2               0.021   Rho-related BTB domain containing 2 isoform 3 [Homo...
RHOBTB2               0.021   Rho-related BTB domain containing 2 isoform 2 [Homo...
RHOBTB2               0.021   Rho-related BTB domain containing 2 isoform 1 [Homo...
LAGE3                 0.021   L antigen family, member 3 
LOC100289242          0.011   PREDICTED: hypothetical protein XP_002342243 
GS85                  0.005   PREDICTED: hypothetical protein LOC100128785 
GS85                  0.005   PREDICTED: hypothetical protein LOC100128785 
GS85                  0.005   PREDICTED: hypothetical protein LOC100128785 
EPPK1                 0.005   epiplakin 1 
ALPK3                 0.005   alpha-kinase 3 
KIAA1328              0.005   hypothetical protein LOC57536 
EIF6                  0.005   eukaryotic translation initiation factor 6 isoform a...
EIF6                  0.005   eukaryotic translation initiation factor 6 isoform a ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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