Guide to the Human Genome
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Name: TNFAIP3 Sequence: fasta or formatted (790aa) NCBI GI: 5454132
Description:

tumor necrosis factor, alpha-induced protein 3

Referenced in:

TNF and Related Signals
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         50           3
 C cysteine            5.1         40           1
 D aspartate           3.8         30           2
 E glutamate           7.2         57           2
 F phenylalanine       4.3         34           2
 G glycine             5.7         45           2
 H histidine           3.8         30           2
 I isoleucine          3.4         27           2
 K lysine              5.8         46           2
 L leucine             8.1         64           2
 M methionine          2.5         20           1
 N asparagine          5.1         40           1
 P proline             7.1         56           2
 Q glutamine           4.9         39           1
 R arginine            7.1         56           2
 S serine              6.7         53           3
 T threonine           5.9         47           2
 V valine              3.7         29           1
 W tryptophan          1.1          9           1
 Y tyrosine            2.3         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor, alpha-induced protein 3 
OTUD7B                0.097   zinc finger protein Cezanne 
OTUD7A                0.089   OTU domain containing 7A 
ZRANB1                0.063   zinc finger, RAN-binding domain containing 1 protei...
VCPIP1                0.020   valosin containing protein (p97)/p47 complex interac...
ZFAND6                0.009   zinc finger, AN1-type domain 6 
NOTCH3                0.006   Notch homolog 3 
LOC100293212          0.006   PREDICTED: hypothetical protein 
LOC100289796          0.006   PREDICTED: hypothetical protein XP_002346485 
LOC100288812          0.006   PREDICTED: hypothetical protein XP_002342329 
ZFAND5                0.006   zinc finger, AN1-type domain 5 
ZFAND5                0.006   zinc finger, AN1-type domain 5 
ZFAND5                0.006   zinc finger, AN1-type domain 5 
LOC100292407          0.005   PREDICTED: hypothetical protein 
ZNF581                0.005   zinc finger protein 581 
CASZ1                 0.005   castor homolog 1, zinc finger isoform a 
EGR2                  0.005   early growth response 2 protein isoform b 
EGR2                  0.005   early growth response 2 protein isoform a 
EGR2                  0.005   early growth response 2 protein isoform a 
EGR2                  0.005   early growth response 2 protein isoform a 
LOC100292227          0.005   PREDICTED: hypothetical protein 
LOC100289692          0.005   PREDICTED: hypothetical protein XP_002347699 
LOC100287811          0.005   PREDICTED: hypothetical protein XP_002344136 
LAMA2                 0.005   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.005   laminin alpha 2 subunit isoform a precursor 
MCTP1                 0.005   multiple C2 domains, transmembrane 1 isoform L [Hom...
FAM53A                0.005   dorsal neural-tube nuclear protein 
MID2                  0.004   midline 2 isoform 2 
MID2                  0.004   midline 2 isoform 1 
LOC100131696          0.004   PREDICTED: keratin associated protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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