Search of human proteins with 18087811

Search of human proteins with 18087811

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|18087811 TRAP/Mediator complex component TRAP25 [Homo
sapiens]
         (178 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|18087811 TRAP/Mediator complex component TRAP25 [Homo sapiens]     360   e-100
gi|74027251 tripartite motif-containing 33 protein isoform beta ...    31   0.64 
gi|74027249 tripartite motif-containing 33 protein isoform alpha...    31   0.64 
gi|71061468 centromere protein E [Homo sapiens]                        31   0.64 
gi|122937345 myosin VB [Homo sapiens]                                  30   0.84 
gi|38044112 restin isoform b [Homo sapiens]                            30   0.84 
gi|4506751 restin isoform a [Homo sapiens]                             30   0.84 
gi|26667243 eyes absent 3 [Homo sapiens]                               30   1.4  
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ...    30   1.4  
gi|151101151 coiled-coil domain containing 2 isoform b [Homo sap...    29   1.9  
gi|151101140 coiled-coil domain containing 2 isoform a [Homo sap...    29   1.9  
gi|151105223 coiled-coil domain containing 2 isoform a [Homo sap...    29   1.9  
gi|151105229 coiled-coil domain containing 2 isoform a [Homo sap...    29   1.9  
gi|109255234 centrosomal protein 290kDa [Homo sapiens]                 29   2.4  
gi|38158022 DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Homo sapi...    29   2.4  
gi|4557325 apolipoprotein E precursor [Homo sapiens]                   28   3.2  
gi|18641360 collectin sub-family member 12 [Homo sapiens]              28   3.2  
gi|21396500 HIRA interacting protein 3 [Homo sapiens]                  28   3.2  
gi|21536461 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransfer...    28   3.2  
gi|5031877 lamin B1 [Homo sapiens]                                     28   4.1  
gi|27764882 leprecan-like 1 isoform a [Homo sapiens]                   28   4.1  
gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s...    28   4.1  
gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s...    28   4.1  
gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s...    28   4.1  
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]     28   4.1  
gi|59806361 hypothetical protein LOC387104 [Homo sapiens]              28   5.4  
gi|169162512 PREDICTED: hypothetical protein [Homo sapiens]            28   5.4  
gi|169161987 PREDICTED: hypothetical protein [Homo sapiens]            28   5.4  
gi|169161159 PREDICTED: hypothetical protein [Homo sapiens]            28   5.4  
gi|122891870 melanoma inhibitory activity family, member 3 [Homo...    28   5.4  

>gi|18087811 TRAP/Mediator complex component TRAP25 [Homo sapiens]
          Length = 178

 Score =  360 bits (924), Expect = e-100
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MSTPPLAASGMAPGPFAGPQAQQAAREVNTASLCRIGQETVQDIVYRTMEIFQLLRNMQL 60
           MSTPPLAASGMAPGPFAGPQAQQAAREVNTASLCRIGQETVQDIVYRTMEIFQLLRNMQL
Sbjct: 1   MSTPPLAASGMAPGPFAGPQAQQAAREVNTASLCRIGQETVQDIVYRTMEIFQLLRNMQL 60

Query: 61  PNGVTYHTGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENCGGMDPIPVEQLIPYVEE 120
           PNGVTYHTGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENCGGMDPIPVEQLIPYVEE
Sbjct: 61  PNGVTYHTGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENCGGMDPIPVEQLIPYVEE 120

Query: 121 DGSKNDDRAGPPRFASEERREIAEVNKKLKQKNQQLKQIMDQLRNLIWDINAMLAMRN 178
           DGSKNDDRAGPPRFASEERREIAEVNKKLKQKNQQLKQIMDQLRNLIWDINAMLAMRN
Sbjct: 121 DGSKNDDRAGPPRFASEERREIAEVNKKLKQKNQQLKQIMDQLRNLIWDINAMLAMRN 178


>gi|74027251 tripartite motif-containing 33 protein isoform beta
           [Homo sapiens]
          Length = 1110

 Score = 30.8 bits (68), Expect = 0.64
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 1   MSTP-PLAASGMAPGPFAGPQAQQAAREVNTASLCR 35
           +STP P  AS  APGP AGP     A  ++T ++C+
Sbjct: 94  VSTPAPAPASAPAPGPSAGPPPGPPASLLDTCAVCQ 129


>gi|74027249 tripartite motif-containing 33 protein isoform alpha
           [Homo sapiens]
          Length = 1127

 Score = 30.8 bits (68), Expect = 0.64
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 1   MSTP-PLAASGMAPGPFAGPQAQQAAREVNTASLCR 35
           +STP P  AS  APGP AGP     A  ++T ++C+
Sbjct: 94  VSTPAPAPASAPAPGPSAGPPPGPPASLLDTCAVCQ 129


>gi|71061468 centromere protein E [Homo sapiens]
          Length = 2701

 Score = 30.8 bits (68), Expect = 0.64
 Identities = 14/32 (43%), Positives = 24/32 (75%)

Query: 142  IAEVNKKLKQKNQQLKQIMDQLRNLIWDINAM 173
            +AEV +KLK+K+QQL++   QL N+  +++ M
Sbjct: 1122 LAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEM 1153


>gi|122937345 myosin VB [Homo sapiens]
          Length = 1848

 Score = 30.4 bits (67), Expect = 0.84
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 77   KLQDNLRQLSVLFRKLRLVYDKCNENCGGMDPIPVEQLIPYVEEDGSKNDDRAGPPRFAS 136
            KLQ  +R+L    +KL++  +K  +     D   V+   P  + D   N D A    + S
Sbjct: 1148 KLQKRVRELEQERKKLQVQLEKREQQ----DSKKVQAEPPQTDIDLDPNADLA----YNS 1199

Query: 137  EERREIAEVNKKLKQK-NQQLKQIMDQ 162
             +R+E+   NKKLK   N+  K + DQ
Sbjct: 1200 LKRQELESENKKLKNDLNELRKAVADQ 1226


>gi|38044112 restin isoform b [Homo sapiens]
          Length = 1392

 Score = 30.4 bits (67), Expect = 0.84
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 68  TGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENCGGMDPIPVEQLIPYVEEDGSKNDD 127
           +G    +LTK+ D LR       +L+L   K NEN   +    +E +   V+ + S+ + 
Sbjct: 891 SGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQK-SIEDMT--VKAEQSQQEA 947

Query: 128 RAGPPRFASEERREIAEVNKKLKQKNQQLKQI 159
                    E  R+++++ KK++  + Q +++
Sbjct: 948 AKKHEEEKKELERKLSDLEKKMETSHNQCQEL 979


>gi|4506751 restin isoform a [Homo sapiens]
          Length = 1427

 Score = 30.4 bits (67), Expect = 0.84
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 68   TGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENCGGMDPIPVEQLIPYVEEDGSKNDD 127
            +G    +LTK+ D LR       +L+L   K NEN   +    +E +   V+ + S+ + 
Sbjct: 926  SGDNSSQLTKMNDELRLKERDVEELQLKLTKANENASFLQK-SIEDMT--VKAEQSQQEA 982

Query: 128  RAGPPRFASEERREIAEVNKKLKQKNQQLKQI 159
                     E  R+++++ KK++  + Q +++
Sbjct: 983  AKKHEEEKKELERKLSDLEKKMETSHNQCQEL 1014


>gi|26667243 eyes absent 3 [Homo sapiens]
          Length = 573

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 80  DNLRQLSVLFRKLRLVYDKCNENCGGM 106
           D +R+L+  +RK+R +YDK   N GG+
Sbjct: 410 DWMRKLAFRYRKVREIYDKHKSNVGGL 436


>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin
           (with transmembrane signal), 1 [Homo sapiens]
          Length = 3259

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 71  YQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENCGGMDPIPVEQLIPYVEEDGSKNDDRAG 130
           +QD L +L+  + +L + F K + +Y+K  +         +  L   +EE     D+ + 
Sbjct: 682 HQDELERLKSQILELELNFHKAQEIYEKNLDE----KAKEISNLNQLIEEFKKNADNNSS 737

Query: 131 PPRFASEERREIAEVNKKLKQKNQQLKQIMDQLRNL 166
                SEER ++    K+L    +   Q+     NL
Sbjct: 738 AFTALSEERDQLLSQVKELSMVTELRAQVKQLEMNL 773


>gi|151101151 coiled-coil domain containing 2 isoform b [Homo
           sapiens]
          Length = 372

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 13/59 (22%), Positives = 33/59 (55%)

Query: 112 EQLIPYVEEDGSKNDDRAGPPRFASEERREIAEVNKKLKQKNQQLKQIMDQLRNLIWDI 170
           +Q+I   +  GS  ++R    +   ++ +EIA + ++L    +++ Q ++++R L  D+
Sbjct: 289 DQMIAEDKSIGSPMEEREKLLKQIKDDNQEIASMERQLTDTKEKINQFIEEIRQLDMDL 347


>gi|151101140 coiled-coil domain containing 2 isoform a [Homo
           sapiens]
          Length = 600

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 13/59 (22%), Positives = 33/59 (55%)

Query: 112 EQLIPYVEEDGSKNDDRAGPPRFASEERREIAEVNKKLKQKNQQLKQIMDQLRNLIWDI 170
           +Q+I   +  GS  ++R    +   ++ +EIA + ++L    +++ Q ++++R L  D+
Sbjct: 289 DQMIAEDKSIGSPMEEREKLLKQIKDDNQEIASMERQLTDTKEKINQFIEEIRQLDMDL 347


>gi|151105223 coiled-coil domain containing 2 isoform a [Homo
           sapiens]
          Length = 600

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 13/59 (22%), Positives = 33/59 (55%)

Query: 112 EQLIPYVEEDGSKNDDRAGPPRFASEERREIAEVNKKLKQKNQQLKQIMDQLRNLIWDI 170
           +Q+I   +  GS  ++R    +   ++ +EIA + ++L    +++ Q ++++R L  D+
Sbjct: 289 DQMIAEDKSIGSPMEEREKLLKQIKDDNQEIASMERQLTDTKEKINQFIEEIRQLDMDL 347


>gi|151105229 coiled-coil domain containing 2 isoform a [Homo
           sapiens]
          Length = 600

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 13/59 (22%), Positives = 33/59 (55%)

Query: 112 EQLIPYVEEDGSKNDDRAGPPRFASEERREIAEVNKKLKQKNQQLKQIMDQLRNLIWDI 170
           +Q+I   +  GS  ++R    +   ++ +EIA + ++L    +++ Q ++++R L  D+
Sbjct: 289 DQMIAEDKSIGSPMEEREKLLKQIKDDNQEIASMERQLTDTKEKINQFIEEIRQLDMDL 347


>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
          Length = 2479

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 111 VEQLIPYVEEDGSKNDDRAGPPRFASEERREIAEVNKKLKQKNQQLKQ-IMDQLRNLIWD 169
           +E +   +E++   N+  A     A  E  ++   NK+LK+KN+QL Q I+D  + +   
Sbjct: 131 LEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQ 190

Query: 170 INAMLAMR 177
              +L+ R
Sbjct: 191 KETLLSRR 198


>gi|38158022 DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Homo
           sapiens]
          Length = 1143

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 119 EEDGSKNDDRAGPPRFASEERREIAEVNKKLKQKNQQLKQIMDQLRNLIWDINAMLAM 176
           ++ GS ++DRAGP    + +  +I +V  KL+    QL+      ++L  +  A+L +
Sbjct: 745 QDGGSSDEDRAGPAPPGASDGVDIQDVKFKLRHDLAQLQAAASSAQDLSREQLALLKL 802


>gi|4557325 apolipoprotein E precursor [Homo sapiens]
          Length = 317

 Score = 28.5 bits (62), Expect = 3.2
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 6/46 (13%)

Query: 112 EQLIPYVEEDGSKNDDRAGPPRFASEERREIAEVNKKLKQKNQQLK 157
           E+L   +EE GS+  DR        E + ++AEV  KL+++ QQ++
Sbjct: 230 ERLRARMEEMGSRTRDRL------DEVKEQVAEVRAKLEEQAQQIR 269


>gi|18641360 collectin sub-family member 12 [Homo sapiens]
          Length = 742

 Score = 28.5 bits (62), Expect = 3.2
 Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 16/146 (10%)

Query: 33  LCRIGQETVQDIVYRTMEIFQLLRNMQLPNGVTYHTGTYQDRLTKLQDNLRQLSVLFRKL 92
           LC +   TV  + Y+ +E         +  G+     TY D+LT ++ +L++L     K 
Sbjct: 46  LCALLTITVAILGYKVVEKMD-----NVTGGMETSRQTYDDKLTAVESDLKKLGDQTGK- 99

Query: 93  RLVYDKCNENCGGMDPIPVEQLIPYVEEDGSKNDDRAGPPRFASEERREIAEVNKKLKQK 152
           + +      +    D + + Q +  + E  SKN D             ++      L  +
Sbjct: 100 KAISTNSELSTFRSDILDLRQQLREITEKTSKNKDTL----------EKLQASGDALVDR 149

Query: 153 NQQLKQIMDQLRNLIWDINAMLAMRN 178
             QLK+ ++    LI  +N  L   N
Sbjct: 150 QSQLKETLENNSFLITTVNKTLQAYN 175


>gi|21396500 HIRA interacting protein 3 [Homo sapiens]
          Length = 556

 Score = 28.5 bits (62), Expect = 3.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 112 EQLIPYVEEDGSKNDDRAGP--PRFASEERREIAEVNKKLKQKNQQLKQIMD 161
           EQ    VEE+  + D+  G   PR  S  RR+ A   +  KQK+Q  + + D
Sbjct: 237 EQREEEVEEEEKEEDEEKGDWKPRTRSNGRRKSAREERSCKQKSQAKRLLGD 288


>gi|21536461 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
           [Homo sapiens]
          Length = 321

 Score = 28.5 bits (62), Expect = 3.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 34  CRIGQETVQDIVYRT-MEIFQLLRNMQLPNGVTYHTGTYQDRLTKLQ 79
           C++G       ++ + +E  QLLR  QLP  VT   G ++ +L  ++
Sbjct: 241 CKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVFEGKLNVIK 287


>gi|5031877 lamin B1 [Homo sapiens]
          Length = 586

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 33/153 (21%), Positives = 70/153 (45%), Gaps = 20/153 (13%)

Query: 20  QAQQAAREVNTASLCRIGQETVQDIVYRTMEIFQLLRNMQLPNGVTYHTGTYQDRLTKLQ 79
           QA    RE + A + R+ +E ++   +  +E  +L   M      +      + R+ +++
Sbjct: 244 QALHEMREQHDAQV-RLYKEELEQTYHAKLENARLSSEMNTSTVNSAREELMESRM-RIE 301

Query: 80  DNLRQLSVLFRKLRLVYDKCNENCGGMDPIPVEQLIPYVEEDGSKNDDRAGPPRFASEER 139
               QLS L ++ R   ++  E         +E L+   E+D S+        R  +++ 
Sbjct: 302 SLSSQLSNLQKESRACLERIQE---------LEDLLAK-EKDNSR--------RMLTDKE 343

Query: 140 REIAEVNKKLKQKNQQLKQIMDQLRNLIWDINA 172
           RE+AE+  +++Q+    +Q++D    L  +I+A
Sbjct: 344 REMAEIRDQMQQQLNDYEQLLDVKLALDMEISA 376


>gi|27764882 leprecan-like 1 isoform a [Homo sapiens]
          Length = 708

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 66  YHTGTYQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENCGGMDPIP 110
           Y++G Y+  +  L+  LR      R+LR +  +C  +C    P+P
Sbjct: 55  YYSGDYERAVRDLEAALRS----HRRLREIRTRCARHCAARHPLP 95


>gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
           sapiens]
          Length = 4470

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 14/82 (17%)

Query: 104 GGMDPIPVEQLIPYVEEDGS----KNDDRAGPPRFASEE--------RREIAEVNKKLKQ 151
           G + P PV+QLI  VEE  S    ++++ AG P+  SE+        + E+  ++ K+K 
Sbjct: 99  GDISPTPVDQLIAVVEEVLSSLLNQSENMAGWPQVVSEDIVKQVHRLKNEMFVMSGKIKG 158

Query: 152 KNQQLKQIMDQLRNLIWDINAM 173
           K   L  I + L +L   + +M
Sbjct: 159 KT--LLPIPEHLGSLDGTLESM 178


>gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
           sapiens]
          Length = 4485

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 14/82 (17%)

Query: 104 GGMDPIPVEQLIPYVEEDGS----KNDDRAGPPRFASEE--------RREIAEVNKKLKQ 151
           G + P PV+QLI  VEE  S    ++++ AG P+  SE+        + E+  ++ K+K 
Sbjct: 99  GDISPTPVDQLIAVVEEVLSSLLNQSENMAGWPQVVSEDIVKQVHRLKNEMFVMSGKIKG 158

Query: 152 KNQQLKQIMDQLRNLIWDINAM 173
           K   L  I + L +L   + +M
Sbjct: 159 KT--LLPIPEHLGSLDGTLESM 178


>gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
           sapiens]
          Length = 4485

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 14/82 (17%)

Query: 104 GGMDPIPVEQLIPYVEEDGS----KNDDRAGPPRFASEE--------RREIAEVNKKLKQ 151
           G + P PV+QLI  VEE  S    ++++ AG P+  SE+        + E+  ++ K+K 
Sbjct: 99  GDISPTPVDQLIAVVEEVLSSLLNQSENMAGWPQVVSEDIVKQVHRLKNEMFVMSGKIKG 158

Query: 152 KNQQLKQIMDQLRNLIWDINAM 173
           K   L  I + L +L   + +M
Sbjct: 159 KT--LLPIPEHLGSLDGTLESM 178


>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
          Length = 2230

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 16/107 (14%)

Query: 74   RLTKLQDNLRQLSVLFRKLRLVYDKCNENCGGMDPIPVEQLIPYVEEDGSKNDDRAGPPR 133
            R+ +L+D++ Q ++    L  V    N+    ++   + Q + + +E G + D+R     
Sbjct: 1526 RIMELEDHITQKTIEIESLNEVLKNYNQQ-KDIEHKELVQKLQHFQELGEEKDNRVKEAE 1584

Query: 134  FA---------------SEERREIAEVNKKLKQKNQQLKQIMDQLRN 165
                               +++E+  VN  +K K ++LK + D+L +
Sbjct: 1585 EKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLES 1631


>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
          Length = 947

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 11/28 (39%), Positives = 21/28 (75%)

Query: 137 EERREIAEVNKKLKQKNQQLKQIMDQLR 164
           +E+ E+ E  +KL+++N+ LK  +D+LR
Sbjct: 347 QEQEEMQEEMEKLREENETLKNEIDELR 374


>gi|169162512 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 119

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 2  STPPLAASGMAPGPFAGPQAQQAAREVNTASL 33
          +T P AA+G AP   A P+A+ AAR    A L
Sbjct: 62 TTAPAAAAGAAPRGGAAPRARSAARRSWRAGL 93


>gi|169161987 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 119

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 2  STPPLAASGMAPGPFAGPQAQQAAREVNTASL 33
          +T P AA+G AP   A P+A+ AAR    A L
Sbjct: 62 TTAPAAAAGAAPRGGAAPRARSAARRSWRAGL 93


>gi|169161159 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 119

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 2  STPPLAASGMAPGPFAGPQAQQAAREVNTASL 33
          +T P AA+G AP   A P+A+ AAR    A L
Sbjct: 62 TTAPAAAAGAAPRGGAAPRARSAARRSWRAGL 93


>gi|122891870 melanoma inhibitory activity family, member 3 [Homo
            sapiens]
          Length = 1907

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 15/110 (13%)

Query: 71   YQDRLTKLQDNLRQLSVLFRKLRLVYDKCNE-NCGGMDPIP-----VEQLIPYVEEDGSK 124
            Y+D++  L+ N   L    + LR++ +   E N    D I      +E+L   +  + S+
Sbjct: 1265 YKDKIKTLEKNQEILDDTAKNLRVMLESEREQNVKNQDLISENKKSIEKLKDVISMNASE 1324

Query: 125  --------NDDRAGPPRFASEERREIAEVNKKLKQKNQQLKQIMDQLRNL 166
                    N+ +    +  SE  R + E N +LK+K +QL+Q ++    L
Sbjct: 1325 FSEVQIALNEAKLSEEKVKSECHR-VQEENARLKKKKEQLQQEIEDWSKL 1373


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,026,927
Number of Sequences: 37866
Number of extensions: 299968
Number of successful extensions: 1847
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1764
Number of HSP's gapped (non-prelim): 132
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.