Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100129101 Sequence: fasta or formatted (119aa) NCBI GI: 169162512
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {119aa} PREDICTED: hypothetical protein
alt mRNA {119aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.5         22           4
 C cysteine            2.5          3           1
 D aspartate           0.8          1           1
 E glutamate           3.4          4           1
 F phenylalanine       0.8          1           1
 G glycine            12.6         15           2
 H histidine           0.8          1           1
 I isoleucine          0.0          0           0
 K lysine              2.5          3           1
 L leucine             5.0          6           1
 M methionine          0.8          1           1
 N asparagine          0.8          1           1
 P proline            14.3         17           2
 Q glutamine           3.4          4           1
 R arginine           17.6         21           2
 S serine              5.0          6           1
 T threonine           6.7          8           2
 V valine              2.5          3           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129101          1.000   PREDICTED: hypothetical protein 
LOC100129101          1.000   PREDICTED: hypothetical protein 
FAM48B1               0.067   hypothetical protein LOC100130302 
LOC100291781          0.063   PREDICTED: hypothetical protein XP_002344871 
LOC100290673          0.063   PREDICTED: hypothetical protein XP_002347567 
LOC100286890          0.063   PREDICTED: hypothetical protein XP_002343388 
LOC100292143          0.063   PREDICTED: hypothetical protein 
LOC100130883          0.063   PREDICTED: similar to proline rich 20 
LOC100130883          0.063   PREDICTED: similar to proline rich 20 
LOC100132261          0.063   PREDICTED: similar to hCG2023245 
LOC100294444          0.063   PREDICTED: similar to family with sequence similari...
FAM48B2               0.063   family with sequence similarity 48, member B2 [Homo...
HCN2                  0.058   hyperpolarization activated cyclic nucleotide-gated...
LOC100128074          0.058   PREDICTED: hypothetical protein 
C17orf96              0.058   hypothetical protein LOC100170841 
LOC100131251          0.054   PREDICTED: hypothetical protein 
LOC100131251          0.054   PREDICTED: hypothetical protein 
INPP5E                0.054   inositol polyphosphate-5-phosphatase E 
APC2                  0.054   adenomatosis polyposis coli 2 
ARTN                  0.054   neurotrophic factor artemin isoform 2 
ARTN                  0.054   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.054   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.054   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.054   neurotrophic factor artemin isoform 3 precursor [Ho...
H1FNT                 0.054   H1 histone family, member N, testis-specific 
C10orf95              0.054   hypothetical protein LOC79946 
COL1A2                0.049   alpha 2 type I collagen 
LOC283999             0.049   hypothetical protein LOC283999 
LOC730183             0.049   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press