Guide to the Human Genome
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Name: IFT74 Sequence: fasta or formatted (600aa) NCBI GI: 151105223
Description:

coiled-coil domain containing 2 isoform a

Referenced in:

Coiled-Coil Proteins
Cardiovascular System

Other entries for this name:
alt mRNA [600aa] coiled-coil domain containing 2 isoform a
alt prot [372aa] coiled-coil domain containing 2 isoform b
alt mRNA [600aa] coiled-coil domain containing 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         29           2
 C cysteine            0.3          2           1
 D aspartate           4.3         26           2
 E glutamate          12.0         72           3
 F phenylalanine       1.5          9           1
 G glycine             3.8         23           2
 H histidine           2.3         14           1
 I isoleucine          6.5         39           2
 K lysine              9.8         59           2
 L leucine             9.7         58           2
 M methionine          4.2         25           2
 N asparagine          5.8         35           2
 P proline             2.2         13           2
 Q glutamine           9.0         54           3
 R arginine            4.3         26           1
 S serine              7.0         42           2
 T threonine           6.5         39           2
 V valine              3.3         20           1
 W tryptophan          0.2          1           1
 Y tyrosine            2.3         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 2 isoform a 
IFT74                 1.000   coiled-coil domain containing 2 isoform a 
IFT74                 1.000   coiled-coil domain containing 2 isoform a 
IFT74                 0.582   coiled-coil domain containing 2 isoform b 
EEA1                  0.068   early endosome antigen 1, 162kD 
MYH11                 0.065   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.065   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.065   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.065   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH9                  0.065   myosin, heavy polypeptide 9, non-muscle 
AKAP9                 0.065   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.065   A-kinase anchor protein 9 isoform 3 
MYH10                 0.063   myosin, heavy polypeptide 10, non-muscle 
CCDC18                0.058   sarcoma antigen NY-SAR-41 
ANKRD26               0.058   ankyrin repeat domain 26 
CGNL1                 0.057   cingulin-like 1 
CCDC88A               0.056   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.056   coiled-coil domain containing 88A isoform 1 
CLIP1                 0.056   restin isoform b 
CLIP1                 0.056   restin isoform a 
TPR                   0.054   nuclear pore complex-associated protein TPR 
MYH7                  0.054   myosin, heavy chain 7, cardiac muscle, beta 
CENPE                 0.053   centromere protein E 
HOOK1                 0.052   hook homolog 1 
CEP110                0.052   centrosomal protein 110kDa 
GCC2                  0.051   GRIP and coiled-coil domain-containing 2 
GOLGA4                0.050   golgi autoantigen, golgin subfamily a, 4 
SCLT1                 0.050   sodium channel associated protein 1 
CEP290                0.050   centrosomal protein 290kDa 
CCDC158               0.050   coiled-coil domain containing 158 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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