Guide to the Human Genome
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Name: VPS18 Sequence: fasta or formatted (973aa) NCBI GI: 17978485
Description:

vacuolar protein sorting 18

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         98           2
 C cysteine            2.5         24           1
 D aspartate           4.8         47           2
 E glutamate           8.9         87           3
 F phenylalanine       4.3         42           2
 G glycine             5.8         56           2
 H histidine           3.3         32           2
 I isoleucine          3.2         31           1
 K lysine              3.7         36           2
 L leucine            12.5        122           4
 M methionine          1.5         15           2
 N asparagine          1.6         16           1
 P proline             5.2         51           3
 Q glutamine           4.7         46           2
 R arginine            7.4         72           2
 S serine              5.5         54           2
 T threonine           3.8         37           2
 V valine              5.9         57           2
 W tryptophan          1.1         11           1
 Y tyrosine            4.0         39           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vacuolar protein sorting 18 
VPS11                 0.019   vacuolar protein sorting 11 
VPS41                 0.010   vacuolar protein sorting 41 isoform 2 
VPS41                 0.010   vacuolar protein sorting 41 isoform 1 
RNF32                 0.006   ring finger protein 32 
MYH10                 0.005   myosin, heavy polypeptide 10, non-muscle 
SYNC                  0.004   syncoilin, intermediate filament 1 isoform 2 
SYNC                  0.004   syncoilin, intermediate filament 1 isoform 1 
LOC390561             0.004   PREDICTED: similar to hect domain and RLD 2 
LOC653720             0.004   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.004   PREDICTED: Golgin subfamily A member 8-like protein...
CCDC88C               0.004   DVL-binding protein DAPLE 
TRIM77                0.004   PREDICTED: tripartite motif-containing 77 
TRIM77                0.004   PREDICTED: tripartite motif-containing 77 
LOC100289112          0.004   PREDICTED: hypothetical protein XP_002343148 
TRIM77                0.004   tripartite motif-containing 77 
PDZRN3                0.004   PDZ domain containing ring finger 3 
LOC653125             0.004   PREDICTED: similar to Golgin subfamily A member 8-l...
PCNT                  0.004   pericentrin 
ZNF521                0.004   zinc finger protein 521 
MYH13                 0.004   myosin, heavy polypeptide 13, skeletal muscle [Homo...
GAS7                  0.004   growth arrest-specific 7 isoform d 
GAS7                  0.004   growth arrest-specific 7 isoform c 
GAS7                  0.004   growth arrest-specific 7 isoform b 
GAS7                  0.004   growth arrest-specific 7 isoform a 
EFCAB4B               0.004   EF-hand calcium binding domain 4B isoform c 
EFCAB4B               0.004   EF-hand calcium binding domain 4B isoform b 
EFCAB4B               0.004   EF-hand calcium binding domain 4B isoform a 
CAPN7                 0.004   calpain 7 
AKAP9                 0.003   A-kinase anchor protein 9 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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