Guide to the Human Genome
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Name: LOC100289112 Sequence: fasta or formatted (450aa) NCBI GI: 239744448
Description:

PREDICTED: hypothetical protein XP_002343148

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3         15           1
 C cysteine            6.0         27           2
 D aspartate           4.4         20           2
 E glutamate           6.0         27           3
 F phenylalanine       4.2         19           2
 G glycine             3.1         14           1
 H histidine           2.7         12           1
 I isoleucine          6.7         30           2
 K lysine              5.8         26           3
 L leucine            10.9         49           3
 M methionine          3.3         15           2
 N asparagine          3.6         16           1
 P proline             4.2         19           1
 Q glutamine           5.1         23           2
 R arginine            6.9         31           2
 S serine              8.9         40           3
 T threonine           5.3         24           1
 V valine              4.4         20           1
 W tryptophan          2.0          9           1
 Y tyrosine            3.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343148 
TRIM77                1.000   tripartite motif-containing 77 
TRIM77                0.923   PREDICTED: tripartite motif-containing 77 
TRIM77                0.923   PREDICTED: tripartite motif-containing 77 
TRIM43                0.438   tripartite motif-containing 43 
LOC653192             0.432   PREDICTED: Tripartite motif-containing protein 43-li...
LOC283116             0.388   PREDICTED: similar to ring finger protein 18 isofor...
SPRYD5                0.367   SPRY domain containing 5 
LOC120824             0.364   PREDICTED: similar to hCG1802386 
LOC120824             0.363   PREDICTED: similar to hCG1802386 
LOC120824             0.363   PREDICTED: similar to hCG1802386 
LOC283116             0.362   PREDICTED: similar to ring finger protein 18 
LOC283116             0.361   PREDICTED: similar to ring finger protein 18 isofor...
LOC283116             0.361   PREDICTED: similar to ring finger protein 18 
LOC653111             0.356   PREDICTED: similar to ring finger protein 18 
TRIM49                0.356   ring finger protein 18 
LOC646754             0.353   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.353   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.353   PREDICTED: tripartite motif-containing protein 64C-...
TRIM64                0.352   tripartite motif-containing 64 
LOC642446             0.351   PREDICTED: tripartite motif-containing protein 64B-...
LOC729384             0.345   hypothetical protein LOC729384 
LOC100134006          0.345   PREDICTED: similar to ring finger protein 18 isofor...
LOC399939             0.345   PREDICTED: similar to ring finger protein 18 
LOC100131392          0.345   PREDICTED: similar to ring finger protein 18 
LOC399939             0.345   PREDICTED: similar to ring finger protein 18 
LOC646754             0.339   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.339   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.339   PREDICTED: tripartite motif-containing protein 64C-...
TRIM53                0.225   tripartite motif-containing 53 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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