Guide to the Human Genome
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Name: TRIM77 Sequence: fasta or formatted (455aa) NCBI GI: 239755644
Description:

PREDICTED: tripartite motif-containing 77

Referenced in:

Tripartite Motif Family

Other entries for this name:
alt prot [450aa] tripartite motif-containing 77
alt mRNA [455aa] PREDICTED: tripartite motif-containing 77
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3         15           1
 C cysteine            6.2         28           2
 D aspartate           4.6         21           2
 E glutamate           6.4         29           3
 F phenylalanine       4.4         20           2
 G glycine             3.3         15           1
 H histidine           3.1         14           1
 I isoleucine          6.2         28           2
 K lysine              5.5         25           2
 L leucine            10.5         48           3
 M methionine          3.3         15           2
 N asparagine          3.3         15           1
 P proline             4.2         19           1
 Q glutamine           4.8         22           2
 R arginine            7.0         32           2
 S serine              9.5         43           3
 T threonine           5.1         23           1
 V valine              4.8         22           1
 W tryptophan          1.5          7           1
 Y tyrosine            3.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: tripartite motif-containing 77 
TRIM77                1.000   PREDICTED: tripartite motif-containing 77 
LOC100289112          0.915   PREDICTED: hypothetical protein XP_002343148 
TRIM77                0.915   tripartite motif-containing 77 
LOC653192             0.397   PREDICTED: Tripartite motif-containing protein 43-li...
TRIM43                0.397   tripartite motif-containing 43 
LOC283116             0.348   PREDICTED: similar to ring finger protein 18 isofor...
LOC646754             0.335   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.335   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.335   PREDICTED: tripartite motif-containing protein 64C-...
SPRYD5                0.328   SPRY domain containing 5 
LOC646754             0.324   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.324   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.324   PREDICTED: tripartite motif-containing protein 64C-...
LOC283116             0.323   PREDICTED: similar to ring finger protein 18 
LOC283116             0.321   PREDICTED: similar to ring finger protein 18 isofor...
LOC283116             0.321   PREDICTED: similar to ring finger protein 18 
LOC120824             0.321   PREDICTED: similar to hCG1802386 
LOC120824             0.321   PREDICTED: similar to hCG1802386 
LOC120824             0.320   PREDICTED: similar to hCG1802386 
TRIM64                0.319   tripartite motif-containing 64 
LOC642446             0.317   PREDICTED: tripartite motif-containing protein 64B-...
LOC653111             0.316   PREDICTED: similar to ring finger protein 18 
TRIM49                0.316   ring finger protein 18 
LOC729384             0.298   hypothetical protein LOC729384 
LOC100134006          0.298   PREDICTED: similar to ring finger protein 18 isofor...
LOC399939             0.298   PREDICTED: similar to ring finger protein 18 
LOC100131392          0.298   PREDICTED: similar to ring finger protein 18 
LOC399939             0.298   PREDICTED: similar to ring finger protein 18 
LOC340970             0.180   PREDICTED: similar to tripartite motif-containing 5...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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