Guide to the Human Genome
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Name: VPS41 Sequence: fasta or formatted (854aa) NCBI GI: 114199475
Description:

vacuolar protein sorting 41 isoform 1

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [829aa] vacuolar protein sorting 41 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         40           2
 C cysteine            2.5         21           1
 D aspartate           6.4         55           2
 E glutamate           9.8         84           4
 F phenylalanine       3.3         28           1
 G glycine             4.6         39           2
 H histidine           3.6         31           2
 I isoleucine          7.3         62           2
 K lysine              8.1         69           3
 L leucine            11.0         94           3
 M methionine          2.5         21           1
 N asparagine          3.6         31           2
 P proline             3.6         31           2
 Q glutamine           3.4         29           2
 R arginine            4.7         40           1
 S serine              6.9         59           2
 T threonine           2.9         25           1
 V valine              6.2         53           3
 W tryptophan          1.2         10           1
 Y tyrosine            3.7         32           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vacuolar protein sorting 41 isoform 1 
VPS41                 0.962   vacuolar protein sorting 41 isoform 2 
VPS11                 0.013   vacuolar protein sorting 11 
VPS18                 0.012   vacuolar protein sorting 18 
SLC24A1               0.008   solute carrier family 24 (sodium/potassium/calcium ex...
WDR61                 0.006   WD repeat domain 61 
CLTCL1                0.006   clathrin, heavy polypeptide-like 1 isoform 2 
CLTCL1                0.006   clathrin, heavy polypeptide-like 1 isoform 1 
LOXHD1                0.006   lipoxygenase homology domains 1 isoform 1 
ZNF267                0.006   zinc finger protein 267 
CDC2L2                0.005   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.005   cell division cycle 2-like 2 isoform 1 
CACNA1F               0.005   calcium channel, voltage-dependent, L type, alpha 1F...
CDC2L1                0.005   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.005   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.005   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.005   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.005   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.005   cell division cycle 2-like 1 (PITSLRE proteins) isof...
EIF2C3                0.005   eukaryotic translation initiation factor 2C, 3 isofo...
EIF2C3                0.005   eukaryotic translation initiation factor 2C, 3 isofo...
WDR90                 0.005   WD repeat domain 90 
NDUFS3                0.005   NADH dehydrogenase (ubiquinone) Fe-S protein 3 precur...
BAZ2B                 0.005   bromodomain adjacent to zinc finger domain, 2B [Homo...
CLTC                  0.005   clathrin heavy chain 1 
MYT1                  0.005   myelin transcription factor 1 
TTBK1                 0.004   tau tubulin kinase 1 
APEX1                 0.004   APEX nuclease 1 
APEX1                 0.004   APEX nuclease 1 
APEX1                 0.004   APEX nuclease 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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