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Search of human proteins with 176866318
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|176866318 hypothetical protein LOC646450 [Homo sapiens]
(290 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|176866318 hypothetical protein LOC646450 [Homo sapiens] 570 e-163
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 42 5e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 39 0.005
gi|153792074 proline rich 12 [Homo sapiens] 39 0.007
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 37 0.020
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 37 0.020
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 37 0.027
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 36 0.035
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 36 0.035
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 36 0.035
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 36 0.035
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 36 0.035
gi|91208420 bassoon protein [Homo sapiens] 36 0.045
gi|193083143 SH3 domain containing 19 isoform b [Homo sapiens] 35 0.077
gi|193083141 SH3 domain containing 19 isoform a [Homo sapiens] 35 0.077
gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo ... 35 0.10
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 35 0.10
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 35 0.10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 34 0.13
gi|117938759 GNAS complex locus XLas [Homo sapiens] 34 0.13
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 34 0.13
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 34 0.13
gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens] 34 0.17
gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens] 34 0.17
gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens] 34 0.17
gi|71274109 nuclear factor of kappa light polypeptide gene enhan... 34 0.17
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ... 34 0.17
gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sap... 34 0.17
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 33 0.22
gi|24308043 S-adenosylhomocysteine hydrolase-like 2 isoform a [H... 33 0.22
>gi|176866318 hypothetical protein LOC646450 [Homo sapiens]
Length = 290
Score = 570 bits (1468), Expect = e-163
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 1 MLGQRAGDGERPGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLS 60
MLGQRAGDGERPGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLS
Sbjct: 1 MLGQRAGDGERPGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLS 60
Query: 61 PNKPDRVRPGQRDRIGAKRQRRRRADAGQARAASSRRVVPTAPEVLGAVASLPDRGRPTV 120
PNKPDRVRPGQRDRIGAKRQRRRRADAGQARAASSRRVVPTAPEVLGAVASLPDRGRPTV
Sbjct: 61 PNKPDRVRPGQRDRIGAKRQRRRRADAGQARAASSRRVVPTAPEVLGAVASLPDRGRPTV 120
Query: 121 ARVATGSRLEGLFSAASLKLSALTQSLTRVRQAPTASGATIRLPASPVEMFLTSAFLTGF 180
ARVATGSRLEGLFSAASLKLSALTQSLTRVRQAPTASGATIRLPASPVEMFLTSAFLTGF
Sbjct: 121 ARVATGSRLEGLFSAASLKLSALTQSLTRVRQAPTASGATIRLPASPVEMFLTSAFLTGF 180
Query: 181 SFHCLYSGIGHGEDILASVEQITIVSRPLSGQRGAGPGNSAYTPRRSQGGPRAATTPGFR 240
SFHCLYSGIGHGEDILASVEQITIVSRPLSGQRGAGPGNSAYTPRRSQGGPRAATTPGFR
Sbjct: 181 SFHCLYSGIGHGEDILASVEQITIVSRPLSGQRGAGPGNSAYTPRRSQGGPRAATTPGFR 240
Query: 241 FPCRGLVRRAVLRLTVTVQDCILTALLAVSFHSIGVVIMTSSYLLGPVVK 290
FPCRGLVRRAVLRLTVTVQDCILTALLAVSFHSIGVVIMTSSYLLGPVVK
Sbjct: 241 FPCRGLVRRAVLRLTVTVQDCILTALLAVSFHSIGVVIMTSSYLLGPVVK 290
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 42.4 bits (98), Expect = 5e-04
Identities = 53/175 (30%), Positives = 62/175 (35%), Gaps = 32/175 (18%)
Query: 5 RAGDGERPGLPGDGE-------GGVPARPGRRAERPPQRPAKVNKAVTCAAH-------- 49
RA D GLPG GG PG+R P A +CAA
Sbjct: 139 RAADAACNGLPGSDSRRAPGKGGGSKGSPGQRPPVPAAAAAGAQARASCAAAKTQGRCCW 198
Query: 50 ---------LPGAAASRPLS---PNKPDRVRPGQRDRIGAKRQRRRRADAGQARAASSRR 97
LPG + P S KP R P Q DR GA R+R A A A +
Sbjct: 199 ECLQNNLAVLPGELGALPHSATAEEKPARALPAQDDR-GASREREEGALAEPAPVPAVAH 257
Query: 98 VVPTAPEVLGAVASLPDRGRPTVARVATGSRLEGLFSAASLKLSALTQSLTRVRQ 152
P E + AS P R G R E L + +SL S L Q R R+
Sbjct: 258 SPPATVEAATSRASPPALLPGPAPR---GDRPE-LLTPSSLHYSTLQQQQQRTRE 308
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 38.9 bits (89), Expect = 0.005
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 3 GQRAGDGERPGLPGDGEGGVPARPGRRAERPPQRPA----KVNKAVTCAAHLPGAAASRP 58
G G +R G G G RPG A PP +P+ +V AA P A
Sbjct: 305 GSGWGSPQRNGGSGQRSGAHGGRPGS-AHSPPDKPSSPSPRVRDKAAAAAPTPPARGKES 363
Query: 59 LSPNK-PDRVRPGQRDRIGAKRQRRRRADAGQARAASS 95
SP P G R GA R+RRRR ++R+++S
Sbjct: 364 PSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSAS 401
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 38.5 bits (88), Expect = 0.007
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 4 QRAGDGERPGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVT--CAAHLPGAAASRPLSP 61
+R+G + P G P P PP +P K + P A P +P
Sbjct: 1675 RRSGQAKNPVSAGGSSAPPPKAPA-----PPPKPETPEKTTSEKPPEQTPETAMPEPPAP 1729
Query: 62 NKPDRVRPGQRDRIGAKRQRRRRADAGQARAASSRRVVPTAPEVLG--AVASLPDRGRPT 119
KP +RP ++++ K R R G+ RA S R+ P G A + LP + RPT
Sbjct: 1730 EKPSLLRPVEKEKEKEKVTRGERPLRGE-RATSGRQTRPERSLATGQPATSRLP-KARPT 1787
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 37.0 bits (84), Expect = 0.020
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 5 RAGDGERPGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSPNKP 64
R+G RPG P G G P +P P K+ C PG + +RP SP+
Sbjct: 129 RSGREARPGGPQAGRAGDPKADQAMHLQPAWAP-KLQPPSVCRQQPPGNSRARPHSPHLG 187
Query: 65 DRVR----PGQRDRIGAKRQRRRRADAGQARAASSRRVVPTAP--EVLGAVASLPDRGRP 118
R R G+ A+R ++ G R ++ RV P EV + P RG+
Sbjct: 188 TRARCPCGCGE-----ARRSALQQLHGGGNRPSAPSRVAVEDPWLEVSSSGRGGPGRGQG 242
Query: 119 TVARVATGSR 128
A G+R
Sbjct: 243 LAGSQARGTR 252
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 37.0 bits (84), Expect = 0.020
Identities = 43/123 (34%), Positives = 51/123 (41%), Gaps = 14/123 (11%)
Query: 5 RAGDGERPGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSPNKP 64
RA +PG PG G G A P RRA R Q + +K A G A L+ +
Sbjct: 761 RARGAGQPG-PGSGSGAERAGPERRA-RDTQTRTRRDKLTDSAR---GGRAR--LTAGRR 813
Query: 65 DRVRPGQRDRIGAKRQRRRRADAGQARAASSRRVVPTAPEVLGAVASLPDRGRPTVARVA 124
R G+R R GA Q R A +AR SRR +P A P P AR A
Sbjct: 814 VRRESGRR-RAGATSQGAIRRAASRARKGESRRPLPANS------AGRPALPSPAAARSA 866
Query: 125 TGS 127
GS
Sbjct: 867 RGS 869
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 36.6 bits (83), Expect = 0.027
Identities = 39/137 (28%), Positives = 53/137 (38%), Gaps = 23/137 (16%)
Query: 12 PGLPGD----GEGGVPARPGRRAERPPQ-RPAKVNKAVTCAAHLPGAAASRPLSPNKPDR 66
PG PG+ GE G P PG P+ +P K K T PG A + NK +
Sbjct: 1363 PGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGT-----PGPAGEKG---NKGSK 1414
Query: 67 VRPGQRDRIGAKRQRRRRADAGQARAASSRRVVPTAPEVLGAVASLPDRGRPTVA----- 121
PG G + +R D+G ++R V T A+ S P+ P +
Sbjct: 1415 GEPGPAGSDGLPGLKGKRGDSGSPATWTTRGFVFTRHSQTTAIPSCPEGTVPLYSGFSFL 1474
Query: 122 -----RVATGSRLEGLF 133
+ A G LE LF
Sbjct: 1475 FVQGNQRAHGQDLESLF 1491
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 36.2 bits (82), Expect = 0.035
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 19/91 (20%)
Query: 3 GQRAGDG--ERPGLPGD-GEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPL 59
G+R DG +PGL G+ GE G+ RPG + E A LPGA +
Sbjct: 253 GERGEDGLPGKPGLRGEIGEQGLAGRPGEKGE----------------AGLPGAPGFPGV 296
Query: 60 SPNKPDRVRPGQRDRIGAKRQRRRRADAGQA 90
K D+ G+ G K R + +AG A
Sbjct: 297 RGEKGDQGEKGELGLPGLKGDRGEKGEAGPA 327
Score = 31.6 bits (70), Expect = 0.85
Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 22/104 (21%)
Query: 1 MLGQRAGDGER--PGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRP 58
M G++ GE+ PGLPG E G+ RPG + P P K A PGAA
Sbjct: 345 MPGEQGPKGEKGDPGLPG--EPGLQGRPGELGPQGPTGPPGA-KGQEGAHGAPGAAG--- 398
Query: 59 LSPNKPDRV-------------RPGQRDRIGAKRQRRRRADAGQ 89
+P P V PG R G +R + AG+
Sbjct: 399 -NPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGE 441
Score = 28.9 bits (63), Expect = 5.5
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 7 GDGERPGLPGDGEGGVPARPGRRAERPPQRPAKV-NKAVTCAAHLPGAAASR-------- 57
GD PGLPG G PG R P P + K A +PG+ SR
Sbjct: 452 GDPGAPGLPGPPGKGKDGEPGLRGS--PGLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVA 509
Query: 58 -PLSPNKP--DRVRPGQR 72
P P+ P D+ PG R
Sbjct: 510 GPPGPSGPPGDKGSPGSR 527
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 36.2 bits (82), Expect = 0.035
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 12 PGLPGD----GEGGVPARPGRRAERPPQ-RPAKVNKAVTCAAHLPGAAASRPLSPNKPDR 66
PG PG+ GE G P PG P+ +P K K T PG A + NK +
Sbjct: 1363 PGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGT-----PGPAGEKG---NKGSK 1414
Query: 67 VRPGQRDRIGAKRQRRRRADAGQARAASSRRVVPTAPEVLGAVASLPD 114
PG G + +R D+G ++R V T A+ S P+
Sbjct: 1415 GEPGPAGSDGLPGLKGKRGDSGSPATWTTRGFVFTRHSQTTAIPSCPE 1462
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 36.2 bits (82), Expect = 0.035
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 12 PGLPGD----GEGGVPARPGRRAERPPQ-RPAKVNKAVTCAAHLPGAAASRPLSPNKPDR 66
PG PG+ GE G P PG P+ +P K K T PG A + NK +
Sbjct: 1363 PGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGT-----PGPAGEKG---NKGSK 1414
Query: 67 VRPGQRDRIGAKRQRRRRADAGQARAASSRRVVPTAPEVLGAVASLPD 114
PG G + +R D+G ++R V T A+ S P+
Sbjct: 1415 GEPGPAGSDGLPGLKGKRGDSGSPATWTTRGFVFTRHSQTTAIPSCPE 1462
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 36.2 bits (82), Expect = 0.035
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 6 AGDGERPGLPG-DGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSPNKP 64
AG PG+PG DG+ GVP G++ E + A K LPG A S+ K
Sbjct: 294 AGPSGEPGMPGKDGQNGVPGLDGQKGE-AGRNGAPGEKGPNGLPGLPGRAGSK---GEKG 349
Query: 65 DRVRPGQRDRIGAKRQRRRRADAG 88
+R R G+ G + DAG
Sbjct: 350 ERGRAGELGEAGPSGEPGVPGDAG 373
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 36.2 bits (82), Expect = 0.035
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 19/91 (20%)
Query: 3 GQRAGDG--ERPGLPGD-GEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPL 59
G+R DG +PGL G+ GE G+ RPG + E A LPGA +
Sbjct: 771 GERGEDGLPGKPGLRGEIGEQGLAGRPGEKGE----------------AGLPGAPGFPGV 814
Query: 60 SPNKPDRVRPGQRDRIGAKRQRRRRADAGQA 90
K D+ G+ G K R + +AG A
Sbjct: 815 RGEKGDQGEKGELGLPGLKGDRGEKGEAGPA 845
Score = 31.6 bits (70), Expect = 0.85
Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 22/104 (21%)
Query: 1 MLGQRAGDGER--PGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRP 58
M G++ GE+ PGLPG E G+ RPG + P P K A PGAA
Sbjct: 863 MPGEQGPKGEKGDPGLPG--EPGLQGRPGELGPQGPTGPPGA-KGQEGAHGAPGAAG--- 916
Query: 59 LSPNKPDRV-------------RPGQRDRIGAKRQRRRRADAGQ 89
+P P V PG R G +R + AG+
Sbjct: 917 -NPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGE 959
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 35.8 bits (81), Expect = 0.045
Identities = 48/165 (29%), Positives = 63/165 (38%), Gaps = 23/165 (13%)
Query: 6 AGDGERPGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSPNKPD 65
AGDG P PG G PG A +PP PA LP A A+R +
Sbjct: 11 AGDGPLP--PGGAGPGPGPGPGPGAGKPPSAPAG-------GGQLPAAGAARSTAVPPVP 61
Query: 66 RVRPGQRDRIGAKRQRRR---RADAGQARAASSRRVVPTAPEVLGAVASLPDRGRPTVAR 122
PG G RR + G RAAS PT P+ A + R T A+
Sbjct: 62 GPGPGPGPGPGPGSTSRRLDPKEPLGNQRAAS-----PT-PKQASATTPGHESPRETRAQ 115
Query: 123 VATGSRLEGLFSAASLKLSALTQSLTRVRQAPTASGATIRLPASP 167
G +G +L++ + TQ R ++P+ S P SP
Sbjct: 116 GPAGQEADG--PRRTLQVDSRTQ---RSGRSPSVSPDRGSTPTSP 155
>gi|193083143 SH3 domain containing 19 isoform b [Homo sapiens]
Length = 767
Score = 35.0 bits (79), Expect = 0.077
Identities = 39/159 (24%), Positives = 62/159 (38%), Gaps = 13/159 (8%)
Query: 12 PGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSPNKPDRVRPGQ 71
P +PG G + G++ P RP + K+V+ + P +P KP V P
Sbjct: 117 PEIPGRGPLAESSDSGKKVPTPAPRPLLLKKSVS------SENPTYPSAPLKPVTVPP-- 168
Query: 72 RDRIGAKRQRRRRADAGQARAASSR-RVVPTAPEVLGAVASLPDRGRPTVARVATGSRLE 130
R+ Q + G+ A+ V+ + P V + S D PT + +
Sbjct: 169 --RLAGASQAKAYKSLGEGPPANPPVPVLQSKPLVDIDLISFDDDVLPTPSGNLAEESVG 226
Query: 131 GLFSAASLKLSALTQSLTR--VRQAPTASGATIRLPASP 167
+L A T+ + V+ APT IR+PA P
Sbjct: 227 SEMVLDPFQLPAKTEPIKERAVQPAPTRKPTVIRIPAKP 265
>gi|193083141 SH3 domain containing 19 isoform a [Homo sapiens]
Length = 790
Score = 35.0 bits (79), Expect = 0.077
Identities = 39/159 (24%), Positives = 62/159 (38%), Gaps = 13/159 (8%)
Query: 12 PGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSPNKPDRVRPGQ 71
P +PG G + G++ P RP + K+V+ + P +P KP V P
Sbjct: 117 PEIPGRGPLAESSDSGKKVPTPAPRPLLLKKSVS------SENPTYPSAPLKPVTVPP-- 168
Query: 72 RDRIGAKRQRRRRADAGQARAASSR-RVVPTAPEVLGAVASLPDRGRPTVARVATGSRLE 130
R+ Q + G+ A+ V+ + P V + S D PT + +
Sbjct: 169 --RLAGASQAKAYKSLGEGPPANPPVPVLQSKPLVDIDLISFDDDVLPTPSGNLAEESVG 226
Query: 131 GLFSAASLKLSALTQSLTR--VRQAPTASGATIRLPASP 167
+L A T+ + V+ APT IR+PA P
Sbjct: 227 SEMVLDPFQLPAKTEPIKERAVQPAPTRKPTVIRIPAKP 265
>gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo
sapiens]
Length = 300
Score = 34.7 bits (78), Expect = 0.10
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 22 VPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSPNKPDRVRP-GQRDRI----G 76
+PA P A R P+ P A + A AA+ + +R R + R G
Sbjct: 176 LPAPPPSPAARQPEPPPMPRAARSARAATAARAAAAEREEAREERARGCSEASRTSSDSG 235
Query: 77 AKRQRRRRADAGQARAASSRRVVPTAPEVLGAVASLPDRGRPTVARVATG 126
R R G+A A ++ R P AP L A + +P R + AR A G
Sbjct: 236 PSRAPAARVVGGEAAATAAARARPRAP--LAAGSPVPVRPQDAAARSAAG 283
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 34.7 bits (78), Expect = 0.10
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 23/137 (16%)
Query: 3 GQRAGDGER--PGLPG----------DGEGGVPARPGRRAERPPQRPAKVNKA-VTCAAH 49
G R +G R PGLPG DG G+P PG + E P +P A +
Sbjct: 517 GDRGAEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGE--PGKPGPPGDAGLQGLPG 574
Query: 50 LPGAAASRPLSPNKPDRVRPGQRDRIGAKRQRRRRADAG-------QARAASSRRVVPT- 101
+PG ++ ++ K PG+ ++G + ++ G Q S + P
Sbjct: 575 VPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVG 634
Query: 102 APEVLGAVASLPDRGRP 118
+P + G + SL G P
Sbjct: 635 SPGLPGKLGSLGSPGLP 651
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 34.7 bits (78), Expect = 0.10
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 23/137 (16%)
Query: 3 GQRAGDGER--PGLPG----------DGEGGVPARPGRRAERPPQRPAKVNKA-VTCAAH 49
G R +G R PGLPG DG G+P PG + E P +P A +
Sbjct: 274 GDRGAEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGE--PGKPGPPGDAGLQGLPG 331
Query: 50 LPGAAASRPLSPNKPDRVRPGQRDRIGAKRQRRRRADAG-------QARAASSRRVVPT- 101
+PG ++ ++ K PG+ ++G + ++ G Q S + P
Sbjct: 332 VPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVG 391
Query: 102 APEVLGAVASLPDRGRP 118
+P + G + SL G P
Sbjct: 392 SPGLPGKLGSLGSPGLP 408
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 34.3 bits (77), Expect = 0.13
Identities = 34/111 (30%), Positives = 38/111 (34%), Gaps = 30/111 (27%)
Query: 12 PGLPG----DGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSPNKPDRV 67
PG PG DGE G P RPG R PQ A LPG A
Sbjct: 223 PGPPGKNGDDGEAGKPGRPGERGPPGPQG----------ARGLPGTAG------------ 260
Query: 68 RPGQRDRIGAKRQRRRRADAGQARAASSRRVVPTAPEVLGAVASLPDRGRP 118
PG + G + DAG A P +P GA + RG P
Sbjct: 261 LPGMKGHRGFSGLDGAKGDAGPAGPKGE----PGSPGENGAPGQMGPRGLP 307
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 34.3 bits (77), Expect = 0.13
Identities = 40/125 (32%), Positives = 50/125 (40%), Gaps = 22/125 (17%)
Query: 9 GERPGLPGDGEGGV----PARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSPNKP 64
G P P D + G PA P A P+ PA A T AAH+ AA P
Sbjct: 444 GAAPDAPADPDSGAAPDAPADPDAGAA--PEAPAAPAAAETRAAHVAPAA---------P 492
Query: 65 DRVRPGQRDRIGAKRQRRRRADAGQARAASSRRVV---PTAPEVLGAVASLPDRGRPTVA 121
D P + + RRA A A A+ +RR + P +PE+ A P RPT A
Sbjct: 493 DAGAPTAPAASATRAAQVRRA-ASAAPASGARRKIHLRPPSPEIQAADPPTP---RPTRA 548
Query: 122 RVATG 126
G
Sbjct: 549 SAWRG 553
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 34.3 bits (77), Expect = 0.13
Identities = 49/182 (26%), Positives = 68/182 (37%), Gaps = 27/182 (14%)
Query: 2 LGQRAGDGERPGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSP 61
L QR+ PG GG + G+R RP R + V A AA R SP
Sbjct: 117 LAQRSPARASPG------GGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPSP 170
Query: 62 NKP------DRVRPGQRDRIGAKRQRRRRADA-GQARAASSRRVVPTAPEVLGAVASLPD 114
P RV +R A + R DA G ++S+ P AP P
Sbjct: 171 ADPGSTSSATRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPR-------FPA 223
Query: 115 RGRPTVARVATGSRLEGLFSAASLKLS---ALTQSLTR----VRQAPTASGATIRLPASP 167
RP R+ + +R L +A+ ++ +T SL R + P A R A+P
Sbjct: 224 SRRPGAPRLLSRTRQRELGGSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAEPREDATP 283
Query: 168 VE 169
E
Sbjct: 284 GE 285
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 34.3 bits (77), Expect = 0.13
Identities = 49/182 (26%), Positives = 68/182 (37%), Gaps = 27/182 (14%)
Query: 2 LGQRAGDGERPGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSP 61
L QR+ PG GG + G+R RP R + V A AA R SP
Sbjct: 117 LAQRSPARASPG------GGFTSAEGKRKTRPAGRGGGRTRRVVAAPESAAAAPGRSPSP 170
Query: 62 NKP------DRVRPGQRDRIGAKRQRRRRADA-GQARAASSRRVVPTAPEVLGAVASLPD 114
P RV +R A + R DA G ++S+ P AP P
Sbjct: 171 ADPGSTSSATRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPR-------FPA 223
Query: 115 RGRPTVARVATGSRLEGLFSAASLKLS---ALTQSLTR----VRQAPTASGATIRLPASP 167
RP R+ + +R L +A+ ++ +T SL R + P A R A+P
Sbjct: 224 SRRPGAPRLLSRTRQRELGGSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAEPREDATP 283
Query: 168 VE 169
E
Sbjct: 284 GE 285
>gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 33.9 bits (76), Expect = 0.17
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 10 ERPGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSPNKPDRVRP 69
+ P P PA+P A +PP PAKV+K AH P + + PL P R P
Sbjct: 225 QHPSQPSAQSAPAPAQP---APQPP--PAKVSKPSQLQAHTPASQQTPPLPPYASPRSPP 279
Query: 70 GQ 71
Q
Sbjct: 280 VQ 281
>gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 33.9 bits (76), Expect = 0.17
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 10 ERPGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSPNKPDRVRP 69
+ P P PA+P A +PP PAKV+K AH P + + PL P R P
Sbjct: 225 QHPSQPSAQSAPAPAQP---APQPP--PAKVSKPSQLQAHTPASQQTPPLPPYASPRSPP 279
Query: 70 GQ 71
Q
Sbjct: 280 VQ 281
>gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 33.9 bits (76), Expect = 0.17
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 10 ERPGLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSPNKPDRVRP 69
+ P P PA+P A +PP PAKV+K AH P + + PL P R P
Sbjct: 225 QHPSQPSAQSAPAPAQP---APQPP--PAKVSKPSQLQAHTPASQQTPPLPPYASPRSPP 279
Query: 70 GQ 71
Q
Sbjct: 280 VQ 281
>gi|71274109 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, epsilon [Homo sapiens]
Length = 500
Score = 33.9 bits (76), Expect = 0.17
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 33 PPQRPAKVNKAVTCAAHLPGAAASRPLSPNKPDRVRPGQRDRIGAKRQRRRRADAGQARA 92
P +RP + + + A PG AA R L P+ P + P G R+ +A +++
Sbjct: 97 PGRRPPRAGRPLCQADPQPGKAARRSLEPD-PAQTGPRPARAAGMSEARKGPDEAEESQY 155
Query: 93 AS---SRRVVPTAPEVLGAVASLPDRGRP 118
S S R + + PE A AS P G P
Sbjct: 156 DSGIESLRSLRSLPESTSAPASGPSDGSP 184
>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
sapiens]
Length = 402
Score = 33.9 bits (76), Expect = 0.17
Identities = 63/238 (26%), Positives = 86/238 (36%), Gaps = 38/238 (15%)
Query: 13 GLPGDGEGGVPARPGRRAERPPQRPAKVNKAVTCAAHL-PGAAASRPLSPNKPDRVRPGQ 71
G+PGD E + E P + +++ + A P AA+S P RV
Sbjct: 86 GVPGDSESALGL-----LEPGPPKSLRISVTLGQAPRAGPSAASSAAAGKTPPSRVPAEP 140
Query: 72 RDRIGA-KRQRRRRADAGQARAASSRRVVPTAPEVLGAVASLPDR----------GRPTV 120
R GA KR+ R D + R+ A G ASL R GR
Sbjct: 141 SSRRGASKRRESWRTDGERLRSGRG-----CAGAARGPDASLDTRREGWPRAAVVGRHEA 195
Query: 121 ARVATGSRLEGLFSAAS--LKLSALTQSLTRVR---QAPTASGATIRLPASPVEMFLTSA 175
R+ G + S + S+L ++L R AP A+GAT A P SA
Sbjct: 196 RRLKPGVSVSSSLSPGPPLQRSSSLNETLRGRRPPGPAPAAAGATRGTAAPPGRD--PSA 253
Query: 176 FLTGFSFHCLYSGIGHGEDILASVEQITIVSRPLSGQRGAGPGNSAYTPRRSQGGPRA 233
+ + C LA+ V+ L G RG G G A P+ G RA
Sbjct: 254 WFLDSASAC--------PTPLAARSWHPFVANKLCG-RGKGAGGGASRPKEGVGSGRA 302
>gi|122937187 glycosyltransferase 8 domain containing 4 [Homo
sapiens]
Length = 443
Score = 33.9 bits (76), Expect = 0.17
Identities = 36/113 (31%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 18 GEGGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSPNKPDRVRPGQRDRIGA 77
G PA P R A P + PA V LPGA+ PG R R
Sbjct: 28 GRAEPPALPARPASAPQRHPAPVPARWPGPGALPGAS--------------PGVRRR--- 70
Query: 78 KRQRRRRADAGQARAASSRRVVPTAPEVLGAVASLPDRGRPTVARVATGSRLE 130
R R R AG+ AA ++ E A LP +A VA G+RLE
Sbjct: 71 -RPPRPRPRAGRRGAARLEKLARRPGEPRSFQAVLPPELWIHLAVVACGNRLE 122
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 33.5 bits (75), Expect = 0.22
Identities = 39/131 (29%), Positives = 45/131 (34%), Gaps = 17/131 (12%)
Query: 3 GQRAGDGERPGLPGD-GEGGVPARPGRRAER-------PPQRPAKVNKAVTCAAHLPGAA 54
GQ DG PG G G+ G+ PG+R ER P P KV P
Sbjct: 975 GQPGPDGP-PGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGP 1033
Query: 55 ASRPLSPNKPDRVRP-------GQRDRIGAKRQRRRRADAGQARAASSRRVVPTAPEVLG 107
P S P G R GA +R R D G A S+ P P +G
Sbjct: 1034 VGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQG-APGTPGPVG 1092
Query: 108 AVASLPDRGRP 118
A RG P
Sbjct: 1093 APGDAGQRGDP 1103
Score = 28.5 bits (62), Expect = 7.2
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 3 GQRAGDGERPGLPG----DGEGGVPARPGRRAERPPQRPA 38
G+R G RPG G DGE GVP +PG A PP P+
Sbjct: 144 GERGPKG-RPGPRGPQGIDGEPGVPGQPG--APGPPGHPS 180
>gi|24308043 S-adenosylhomocysteine hydrolase-like 2 isoform a [Homo
sapiens]
Length = 611
Score = 33.5 bits (75), Expect = 0.22
Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 25/152 (16%)
Query: 20 GGVPARPGRRAERPPQRPAKVNKAVTCAAHLPGAAASRPLSPNKPDRVRPGQRDRIGAKR 79
GG P P AERPP PG+ + LSP + R
Sbjct: 47 GGDPEAPAPAAERPP-------------VPGPGSGPAAALSPAAGKVPQASAMKRSDPHH 93
Query: 80 QRRRRADAGQARAASSRRVVPTAPEVLGAVASLPDR-----------GRPTVARVATGSR 128
Q +R D G+A S V AP + D+ GR +++R + S
Sbjct: 94 QHQRHRDGGEA-LVSPDGTVTEAPRTVKKQIQFADQKQEFNKRPTKIGRRSLSRSISQSS 152
Query: 129 LEGLFSAASLKLSALTQSLTRVRQAPTASGAT 160
+ SAAS S+ ++ R +Q + G++
Sbjct: 153 TDSYSSAASYTDSSDDETSPRDKQQKNSKGSS 184
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,442,466
Number of Sequences: 37866
Number of extensions: 659512
Number of successful extensions: 4415
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 302
Number of HSP's that attempted gapping in prelim test: 3896
Number of HSP's gapped (non-prelim): 835
length of query: 290
length of database: 18,247,518
effective HSP length: 101
effective length of query: 189
effective length of database: 14,423,052
effective search space: 2725956828
effective search space used: 2725956828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.