Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SIN3A Sequence: fasta or formatted (1273aa) NCBI GI: 23397666
Description:

transcriptional co-repressor Sin3A

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
Myc and Related Functions

Other entries for this name:
alt mRNA [1273aa] transcriptional co-repressor Sin3A
alt mRNA [1273aa] transcriptional co-repressor Sin3A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         82           3
 C cysteine            1.1         14           1
 D aspartate           4.8         61           2
 E glutamate           8.1        103           7
 F phenylalanine       3.5         44           2
 G glycine             4.6         58           3
 H histidine           3.1         40           3
 I isoleucine          4.5         57           2
 K lysine              6.8         87           3
 L leucine             8.4        107           2
 M methionine          2.0         25           1
 N asparagine          4.2         54           3
 P proline             6.5         83           3
 Q glutamine           7.5         96           3
 R arginine            5.7         72           2
 S serine              7.2         92           2
 T threonine           4.9         62           3
 V valine              6.4         81           2
 W tryptophan          0.9         11           1
 Y tyrosine            3.5         44           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcriptional co-repressor Sin3A 
SIN3A                 1.000   transcriptional co-repressor Sin3A 
SIN3A                 1.000   transcriptional co-repressor Sin3A 
SIN3B                 0.441   SIN3 homolog B, transcription regulator 
MED15                 0.013   mediator complex subunit 15 isoform a 
MYST3                 0.013   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.013   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.013   MYST histone acetyltransferase (monocytic leukemia)...
MED15                 0.013   mediator complex subunit 15 isoform b 
ATXN2L                0.013   ataxin 2 related protein isoform B 
ATXN2L                0.013   ataxin 2 related protein isoform E 
ATXN2L                0.013   ataxin 2 related protein isoform C 
ATXN2L                0.013   ataxin 2 related protein isoform A 
ATXN2L                0.013   ataxin 2 related protein isoform D 
PRR12                 0.012   proline rich 12 
RAPH1                 0.011   Ras association and pleckstrin homology domains 1 is...
BRD4                  0.011   bromodomain-containing protein 4 isoform long 
FLJ22184              0.010   PREDICTED: hypothetical protein FLJ22184 
BPTF                  0.010   bromodomain PHD finger transcription factor isoform ...
SFPQ                  0.010   splicing factor proline/glutamine rich (polypyrimidin...
WIPF2                 0.010   WIRE protein 
CRTC1                 0.010   mucoepidermoid carcinoma translocated 1 isoform 3 [...
CRTC1                 0.010   mucoepidermoid carcinoma translocated 1 isoform 1 [...
WASL                  0.010   Wiskott-Aldrich syndrome gene-like protein 
ZFHX4                 0.009   zinc finger homeodomain 4 
FLJ22184              0.009   PREDICTED: hypothetical protein FLJ22184 
ANXA11                0.009   annexin A11 
ANXA11                0.009   annexin A11 
ANXA11                0.009   annexin A11 
FLJ22184              0.009   PREDICTED: hypothetical protein LOC80164 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press