Guide to the Human Genome
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Name: GNB1L Sequence: fasta or formatted (327aa) NCBI GI: 17402902
Description:

guanine nucleotide binding protein beta-subunit-like polypeptide

Referenced in:

WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         32           2
 C cysteine            3.7         12           1
 D aspartate           5.5         18           1
 E glutamate           3.4         11           2
 F phenylalanine       2.4          8           1
 G glycine             8.3         27           2
 H histidine           2.8          9           1
 I isoleucine          3.1         10           1
 K lysine              3.1         10           1
 L leucine            11.9         39           3
 M methionine          1.8          6           1
 N asparagine          0.3          1           1
 P proline             6.4         21           5
 Q glutamine           6.7         22           2
 R arginine            6.7         22           2
 S serine              8.3         27           2
 T threonine           4.6         15           2
 V valine              7.3         24           2
 W tryptophan          3.4         11           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   guanine nucleotide binding protein beta-subunit-like... 
WDR38                 0.066   WD repeat domain 38 
KATNB1                0.051   katanin p80 subunit B 1 
TAF5L                 0.051   PCAF associated factor 65 beta isoform a 
NLE1                  0.051   Notchless gene homolog isoform a 
TBL3                  0.051   transducin beta-like 3 
WDR3                  0.049   WD repeat-containing protein 3 
FBXW11                0.049   F-box and WD repeat domain containing 11 isoform C [...
COPA                  0.049   coatomer protein complex, subunit alpha isoform 1 [...
COPA                  0.049   coatomer protein complex, subunit alpha isoform 2 [...
FBXW11                0.049   F-box and WD repeat domain containing 11 isoform A [...
FBXW11                0.049   F-box and WD repeat domain containing 11 isoform B [...
WDR69                 0.049   WD repeat domain 69 
WDR5B                 0.048   WD repeat domain 5B 
TAF5                  0.048   TBP-associated factor 5 
GNB2L1                0.046   guanine nucleotide binding protein (G protein), beta ...
BTRC                  0.046   beta-transducin repeat containing protein isoform 2 [...
BTRC                  0.046   beta-transducin repeat containing protein isoform 1 ...
GNB5                  0.045   guanine nucleotide-binding protein, beta-5 subunit is...
GNB5                  0.045   guanine nucleotide-binding protein, beta-5 subunit i...
WSB2                  0.045   WD SOCS-box protein 2 
GNB3                  0.045   guanine nucleotide-binding protein, beta-3 subunit [H...
UTP15                 0.045   UTP15, U3 small nucleolar ribonucleoprotein, homolog...
PAK1IP1               0.045   PAK1 interacting protein 1 
KIF21A                0.043   kinesin family member 21A 
NLE1                  0.043   Notchless gene homolog isoform b 
CDC40                 0.043   cell division cycle 40 homolog 
FBXW7                 0.040   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.040   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.040   F-box and WD repeat domain containing 7 isoform 2 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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