Guide to the Human Genome
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Name: C5orf22 Sequence: fasta or formatted (442aa) NCBI GI: 170763486
Description:

hypothetical protein LOC55322

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         24           2
 C cysteine            2.3         10           1
 D aspartate           7.7         34           2
 E glutamate           8.6         38           2
 F phenylalanine       3.6         16           2
 G glycine             3.8         17           2
 H histidine           3.4         15           2
 I isoleucine          4.5         20           1
 K lysine              5.2         23           2
 L leucine            10.6         47           2
 M methionine          2.0          9           1
 N asparagine          3.8         17           2
 P proline             5.7         25           2
 Q glutamine           5.2         23           2
 R arginine            2.9         13           2
 S serine              8.1         36           3
 T threonine           6.1         27           3
 V valine              6.6         29           2
 W tryptophan          1.1          5           1
 Y tyrosine            3.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55322 
RYR1                  0.014   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.014   skeletal muscle ryanodine receptor isoform 1 
AFF3                  0.009   AF4/FMR2 family, member 3 isoform 2 
AFF3                  0.009   AF4/FMR2 family, member 3 isoform 1 
DDX24                 0.009   DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 
AKAP9                 0.008   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.008   A-kinase anchor protein 9 isoform 3 
SETD1A                0.008   SET domain containing 1A 
RUFY2                 0.008   RUN and FYVE domain-containing 2 isoform a 
CEP170                0.008   centrosomal protein 170kDa isoform beta 
CEP170                0.008   centrosomal protein 170kDa isoform alpha 
CEP170                0.008   centrosomal protein 170kDa isoform gamma 
ZFR2                  0.008   zinc finger RNA binding protein 2 isoform 1 
KIAA1009              0.008   KIAA1009 protein 
TOP2B                 0.007   DNA topoisomerase II, beta isozyme 
EEA1                  0.007   early endosome antigen 1, 162kD 
BLM                   0.006   Bloom syndrome protein 
PRMT5                 0.006   protein arginine methyltransferase 5 isoform b [Homo...
PRMT5                 0.006   protein arginine methyltransferase 5 isoform a [Homo...
IWS1                  0.006   IWS1 homolog 
WEE2                  0.006   WEE1 homolog 2 
NPAS3                 0.006   neuronal PAS domain protein 3 isoform 2 
NPAS3                 0.006   neuronal PAS domain protein 3 isoform 1 
RAG1                  0.005   recombination activating gene 1 
DSPP                  0.005   dentin sialophosphoprotein preproprotein 
BAZ2B                 0.005   bromodomain adjacent to zinc finger domain, 2B [Homo...
CLSPN                 0.005   claspin 
MUC21                 0.005   mucin 21 
ANAPC2                0.005   anaphase-promoting complex subunit 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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