RAG1 29997

Name: RAG1	Sequence: fasta or formatted (1043aa)		NCBI GI: 4557841
Description: recombination activating gene 1		Referenced in: B cells DNases, Recombination, and DNA Repair Innate and Adaptive Immunity Ring Finger Proteins T cells
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.5 68 2 C cysteine 3.3 34 2 D aspartate 4.6 48 2 E glutamate 8.0 83 2 F phenylalanine 4.4 46 1 G glycine 4.4 46 2 H histidine 4.0 42 2 I isoleucine 4.6 48 2 K lysine 8.7 91 2 L leucine 9.3 97 2 M methionine 2.7 28 1 N asparagine 3.6 38 1 P proline 5.0 52 2 Q glutamine 3.3 34 1 R arginine 6.4 67 2 S serine 8.3 87 3 T threonine 3.8 40 1 V valine 5.7 59 3 W tryptophan 1.0 10 1 Y tyrosine 2.4 25 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 recombination activating gene 1 LNX1 0.016 ligand of numb-protein X 1 isoform a RNF166 0.015 ring finger protein 166 RNF138 0.014 ring finger protein 138 isoform 1 TRIM43 0.014 tripartite motif-containing 43 RNF125 0.013 ring finger protein 125 LOC653192 0.013 PREDICTED: Tripartite motif-containing protein 43-li... TRIM38 0.013 tripartite motif-containing 38 TRAF6 0.012 TNF receptor-associated factor 6 TRAF6 0.012 TNF receptor-associated factor 6 TRIM21 0.012 tripartite motif protein 21 LOC100292251 0.012 PREDICTED: similar to Tripartite motif-containing p... LOC100290015 0.012 PREDICTED: hypothetical protein XP_002348292 BRCA1 0.011 breast cancer 1, early onset isoform 2 BRCA1 0.011 breast cancer 1, early onset isoform 5 BRCA1 0.011 breast cancer 1, early onset isoform 4 BRCA1 0.011 breast cancer 1, early onset isoform 1 TRIM40 0.011 tripartite motif-containing 40 TRIM26 0.011 tripartite motif-containing 26 TRIM11 0.011 tripartite motif-containing 11 LONRF1 0.010 LON peptidase N-terminal domain and ring finger 1 [H... TRIM60 0.010 ring finger protein 129 LOC642446 0.010 PREDICTED: tripartite motif-containing protein 64B-... LOC120824 0.010 PREDICTED: similar to hCG1802386 LOC120824 0.010 PREDICTED: similar to hCG1802386 LOC120824 0.010 PREDICTED: similar to hCG1802386 RNF114 0.010 zinc finger protein 313 PDZRN3 0.010 PDZ domain containing ring finger 3 TRIM7 0.010 tripartite motif-containing 7 isoform 1 TRIM7 0.010 tripartite motif-containing 7 isoform 4 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.