Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CCNH Sequence: fasta or formatted (323aa) NCBI GI: 4502623
Description:

cyclin H

Referenced in:

Cyclins and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         20           1
 C cysteine            2.5          8           1
 D aspartate           4.3         14           3
 E glutamate           9.6         31           4
 F phenylalanine       4.3         14           1
 G glycine             2.2          7           1
 H histidine           2.5          8           1
 I isoleucine          4.3         14           2
 K lysine              7.4         24           2
 L leucine            13.0         42           3
 M methionine          3.1         10           1
 N asparagine          4.6         15           2
 P proline             4.6         15           2
 Q glutamine           3.1         10           2
 R arginine            6.2         20           1
 S serine              7.4         24           2
 T threonine           4.0         13           1
 V valine              5.3         17           2
 W tryptophan          0.6          2           1
 Y tyrosine            4.6         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin H 
CCNC                  0.067   cyclin C isoform a 
CCND1                 0.038   cyclin D1 
CCNC                  0.034   cyclin C isoform b 
FAM58B                0.032   family with sequence similarity 58 member B 
CCNK                  0.030   cyclin K isoform 1 
CCNK                  0.030   cyclin K isoform 2 
CCND2                 0.030   cyclin D2 
FAM58A                0.030   family with sequence similarity 58, member A isofor...
FAM58A                0.030   family with sequence similarity 58, member A isofor...
CCNL1                 0.030   cyclin L1 
CCNT2                 0.029   cyclin T2 isoform b 
CCNT2                 0.029   cyclin T2 isoform a 
CCNL2                 0.024   cyclin L2 isoform A 
CCNJ                  0.021   cyclin J isoform 1 
CCNT1                 0.016   cyclin T1 
DNAH17                0.013   PREDICTED: dynein, axonemal, heavy chain 17 
DNAH17                0.013   PREDICTED: dynein, axonemal, heavy chain 17 
DNAH17                0.013   PREDICTED: dynein, axonemal, heavy chain 17 
OTUD6B                0.013   OTU domain containing 6B 
MYH9                  0.010   myosin, heavy polypeptide 9, non-muscle 
ODF2                  0.010   outer dense fiber of sperm tails 2 isoform 2 
ODF2                  0.010   outer dense fiber of sperm tails 2 isoform 1 
NGDN                  0.010   neuroguidin isoform 1 
NGDN                  0.010   neuroguidin isoform 2 
CCNL2                 0.008   cyclin L2 isoform D 
CCNL2                 0.008   cyclin L2 isoform C 
CCNL2                 0.008   cyclin L2 isoform B 
LOC653720             0.008   PREDICTED: similar to Golgin subfamily A member 8-l...
KIF3B                 0.008   kinesin family member 3B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press