Guide to the Human Genome
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Name: LPAR1 Sequence: fasta or formatted (364aa) NCBI GI: 16950638
Description:

lysophosphatidic acid receptor 1

Referenced in:

G-Protein-coupled Receptors
LIM Domain Proteins

Other entries for this name:
alt mRNA [364aa] lysophosphatidic acid receptor 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         29           3
 C cysteine            3.0         11           2
 D aspartate           2.7         10           1
 E glutamate           2.7         10           1
 F phenylalanine       5.8         21           2
 G glycine             4.1         15           1
 H histidine           2.5          9           1
 I isoleucine          7.7         28           2
 K lysine              1.4          5           1
 L leucine            10.2         37           4
 M methionine          5.2         19           2
 N asparagine          5.8         21           1
 P proline             3.6         13           1
 Q glutamine           2.5          9           1
 R arginine            6.0         22           2
 S serine              7.7         28           2
 T threonine           6.3         23           1
 V valine              9.3         34           4
 W tryptophan          1.6          6           1
 Y tyrosine            3.8         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lysophosphatidic acid receptor 1 
LPAR1                 1.000   lysophosphatidic acid receptor 1 
LPAR2                 0.489   lysophosphatidic acid receptor 2 
LPAR3                 0.484   lysophosphatidic acid receptor 3 
S1PR1                 0.305   sphingosine-1-phosphate receptor 1 
S1PR3                 0.281   sphingosine-1-phosphate receptor 3 
S1PR2                 0.244   endothelial differentiation, sphingolipid G-protein...
S1PR5                 0.240   endothelial differentiation, sphingolipid G-protein-...
S1PR4                 0.203   sphingosine-1-phosphate receptor 4 precursor 
CNR1                  0.153   cannabinoid receptor 1 isoform a 
CNR1                  0.153   cannabinoid receptor 1 isoform a 
CNR1                  0.153   cannabinoid receptor 1 isoform a 
CNR1                  0.153   cannabinoid receptor 1 isoform a 
CNR1                  0.153   cannabinoid receptor 1 isoform a 
CNR1                  0.153   cannabinoid receptor 1 isoform b 
MC4R                  0.147   melanocortin 4 receptor 
MC5R                  0.147   melanocortin 5 receptor 
MC3R                  0.137   melanocortin 3 receptor 
GPR3                  0.137   G protein-coupled receptor 3 
GPR12                 0.134   G protein-coupled receptor 12 
ADORA1                0.114   adenosine A1 receptor 
ADORA1                0.114   adenosine A1 receptor 
GPR6                  0.114   G protein-coupled receptor 6 
MC2R                  0.114   melanocortin 2 receptor 
ADORA2A               0.112   adenosine A2a receptor 
CNR2                  0.110   cannabinoid receptor 2 (macrophage) 
ADRA1B                0.092   alpha-1B-adrenergic receptor 
MC1R                  0.090   melanocortin 1 receptor 
ADORA2B               0.090   adenosine A2b receptor 
ADRB2                 0.079   adrenergic, beta-2-, receptor, surface 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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