Guide to the Human Genome
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Name: CNR1 Sequence: fasta or formatted (472aa) NCBI GI: 237681175
Description:

cannabinoid receptor 1 isoform a

Referenced in:

G-Protein-coupled Receptors

Other entries for this name:
alt prot [439aa] cannabinoid receptor 1 isoform b
alt mRNA [472aa] cannabinoid receptor 1 isoform a
alt mRNA [472aa] cannabinoid receptor 1 isoform a
alt mRNA [472aa] cannabinoid receptor 1 isoform a
alt mRNA [472aa] cannabinoid receptor 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         34           2
 C cysteine            2.8         13           1
 D aspartate           5.1         24           1
 E glutamate           3.2         15           2
 F phenylalanine       5.9         28           1
 G glycine             4.4         21           2
 H histidine           2.8         13           1
 I isoleucine          8.1         38           3
 K lysine              5.1         24           1
 L leucine            11.2         53           3
 M methionine          3.4         16           1
 N asparagine          3.6         17           2
 P proline             3.4         16           1
 Q glutamine           3.0         14           2
 R arginine            4.2         20           1
 S serine              8.5         40           2
 T threonine           6.1         29           2
 V valine              8.1         38           2
 W tryptophan          1.1          5           1
 Y tyrosine            3.0         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cannabinoid receptor 1 isoform a 
CNR1                  1.000   cannabinoid receptor 1 isoform a 
CNR1                  1.000   cannabinoid receptor 1 isoform a 
CNR1                  1.000   cannabinoid receptor 1 isoform a 
CNR1                  1.000   cannabinoid receptor 1 isoform a 
CNR1                  0.908   cannabinoid receptor 1 isoform b 
CNR2                  0.276   cannabinoid receptor 2 (macrophage) 
LPAR1                 0.118   lysophosphatidic acid receptor 1 
LPAR1                 0.118   lysophosphatidic acid receptor 1 
S1PR1                 0.115   sphingosine-1-phosphate receptor 1 
LPAR3                 0.114   lysophosphatidic acid receptor 3 
S1PR3                 0.113   sphingosine-1-phosphate receptor 3 
S1PR4                 0.103   sphingosine-1-phosphate receptor 4 precursor 
LPAR2                 0.101   lysophosphatidic acid receptor 2 
S1PR5                 0.100   endothelial differentiation, sphingolipid G-protein-...
GPR12                 0.098   G protein-coupled receptor 12 
GPR3                  0.091   G protein-coupled receptor 3 
ADRA1A                0.086   alpha-1A-adrenergic receptor isoform 4 
ADRA1A                0.086   alpha-1A-adrenergic receptor isoform 1 
ADRA1A                0.086   alpha-1A-adrenergic receptor isoform 2 
ADRA1A                0.086   alpha-1A-adrenergic receptor isoform 3 
S1PR2                 0.085   endothelial differentiation, sphingolipid G-protein...
GPR6                  0.085   G protein-coupled receptor 6 
MC2R                  0.082   melanocortin 2 receptor 
ADRA1B                0.079   alpha-1B-adrenergic receptor 
MC5R                  0.078   melanocortin 5 receptor 
MC4R                  0.075   melanocortin 4 receptor 
MC3R                  0.075   melanocortin 3 receptor 
ADORA2B               0.075   adenosine A2b receptor 
ADRA1D                0.075   alpha-1D-adrenergic receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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