Guide to the Human Genome
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Name: S1PR1 Sequence: fasta or formatted (382aa) NCBI GI: 13027636
Description:

sphingosine-1-phosphate receptor 1

Referenced in:

G-Protein-coupled Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         23           1
 C cysteine            3.4         13           2
 D aspartate           2.6         10           1
 E glutamate           2.6         10           1
 F phenylalanine       5.2         20           1
 G glycine             4.5         17           2
 H histidine           1.8          7           1
 I isoleucine          9.4         36           2
 K lysine              6.0         23           2
 L leucine            13.6         52           4
 M methionine          2.6         10           1
 N asparagine          5.0         19           2
 P proline             3.1         12           1
 Q glutamine           0.5          2           1
 R arginine            5.0         19           2
 S serine             11.3         43           3
 T threonine           5.8         22           2
 V valine              6.3         24           2
 W tryptophan          1.3          5           1
 Y tyrosine            3.9         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sphingosine-1-phosphate receptor 1 
S1PR3                 0.488   sphingosine-1-phosphate receptor 3 
S1PR2                 0.418   endothelial differentiation, sphingolipid G-protein...
S1PR5                 0.406   endothelial differentiation, sphingolipid G-protein-...
S1PR4                 0.299   sphingosine-1-phosphate receptor 4 precursor 
LPAR1                 0.295   lysophosphatidic acid receptor 1 
LPAR1                 0.295   lysophosphatidic acid receptor 1 
LPAR2                 0.251   lysophosphatidic acid receptor 2 
LPAR3                 0.247   lysophosphatidic acid receptor 3 
CNR1                  0.143   cannabinoid receptor 1 isoform a 
CNR1                  0.143   cannabinoid receptor 1 isoform a 
CNR1                  0.143   cannabinoid receptor 1 isoform a 
CNR1                  0.143   cannabinoid receptor 1 isoform a 
CNR1                  0.143   cannabinoid receptor 1 isoform a 
CNR1                  0.143   cannabinoid receptor 1 isoform b 
GPR3                  0.138   G protein-coupled receptor 3 
GPR12                 0.135   G protein-coupled receptor 12 
MC4R                  0.131   melanocortin 4 receptor 
MC5R                  0.126   melanocortin 5 receptor 
GPR6                  0.122   G protein-coupled receptor 6 
MC3R                  0.117   melanocortin 3 receptor 
HTR4                  0.115   serotonin 5-HT4 receptor isoform b 
HTR4                  0.113   serotonin 5-HT4 receptor isoform n 
HTR4                  0.113   serotonin 5-HT4 receptor isoform i 
HTR4                  0.113   serotonin 5-HT4 receptor isoform d 
HTR4                  0.113   serotonin 5-HT4 receptor isoform a 
HTR4                  0.113   serotonin 5-HT4 receptor isoform g 
ADRA1B                0.109   alpha-1B-adrenergic receptor 
ADORA2A               0.109   adenosine A2a receptor 
MC2R                  0.108   melanocortin 2 receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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