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Search of human proteins with 16950603
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16950603 mitochondrial ribosomal protein S35 [Homo sapiens]
(323 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16950603 mitochondrial ribosomal protein S35 [Homo sapiens] 652 0.0
gi|15718680 IL2-inducible T-cell kinase [Homo sapiens] 36 0.053
gi|171543895 ataxin 2 [Homo sapiens] 35 0.090
gi|110349719 titin isoform N2-A [Homo sapiens] 34 0.15
gi|166064029 angiomotin isoform 1 [Homo sapiens] 34 0.15
gi|31543543 retinoic acid induced 17 [Homo sapiens] 34 0.15
gi|34915994 transducin-like enhancer protein 4 [Homo sapiens] 34 0.15
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens] 34 0.20
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens] 34 0.20
gi|39725634 la related protein isoform 1 [Homo sapiens] 33 0.26
gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens] 33 0.34
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 33 0.45
gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens] 33 0.45
gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens] 33 0.45
gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens] 33 0.45
gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens] 33 0.45
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 33 0.45
gi|224586773 hypothetical protein LOC643854 [Homo sapiens] 32 0.58
gi|221219020 NYD-SP11 protein [Homo sapiens] 32 0.58
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 32 0.58
gi|4502435 BMX non-receptor tyrosine kinase [Homo sapiens] 32 0.58
gi|42544182 BMX non-receptor tyrosine kinase [Homo sapiens] 32 0.58
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 32 0.58
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 32 0.58
gi|8922950 meiosis-specific nuclear structural 1 [Homo sapiens] 32 0.58
gi|150378503 leiomodin 2 (cardiac) [Homo sapiens] 32 0.58
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens] 32 0.76
gi|197313748 SET domain containing 2 [Homo sapiens] 32 0.76
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens] 32 0.76
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens] 32 0.76
>gi|16950603 mitochondrial ribosomal protein S35 [Homo sapiens]
Length = 323
Score = 652 bits (1683), Expect = 0.0
Identities = 323/323 (100%), Positives = 323/323 (100%)
Query: 1 MAAAALPAWLSLQSRARTLRAFSTAVYSATPVPTPSLPERTPGNERPPRRKALPPRTEKM 60
MAAAALPAWLSLQSRARTLRAFSTAVYSATPVPTPSLPERTPGNERPPRRKALPPRTEKM
Sbjct: 1 MAAAALPAWLSLQSRARTLRAFSTAVYSATPVPTPSLPERTPGNERPPRRKALPPRTEKM 60
Query: 61 AVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIK 120
AVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIK
Sbjct: 61 AVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIK 120
Query: 121 KHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSL 180
KHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSL
Sbjct: 121 KHCEALKDFCTEWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSL 180
Query: 181 NLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTVLYHESWNTEEWE 240
NLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTVLYHESWNTEEWE
Sbjct: 181 NLDDHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTVLYHESWNTEEWE 240
Query: 241 KSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVSLK 300
KSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVSLK
Sbjct: 241 KSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVSLK 300
Query: 301 NEEENENSISQYKESVKRLLNVT 323
NEEENENSISQYKESVKRLLNVT
Sbjct: 301 NEEENENSISQYKESVKRLLNVT 323
>gi|15718680 IL2-inducible T-cell kinase [Homo sapiens]
Length = 620
Score = 35.8 bits (81), Expect = 0.053
Identities = 23/88 (26%), Positives = 36/88 (40%)
Query: 231 HESWNTEEWEKSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIE 290
HE + + K+ ++E Y W N S R+ E LL E + GT +
Sbjct: 217 HEGYVPSSYLVEKSPNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTAGTYTVS 276
Query: 291 EYKKSVVSLKNEEENENSISQYKESVKR 318
+ K+VVS N I + ++ KR
Sbjct: 277 VFTKAVVSENNPCIKHYHIKETNDNPKR 304
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 35.0 bits (79), Expect = 0.090
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 2 AAAALPAWLSLQSRARTLRAFSTAVYSATPVPTPSLPERTPGNERPPRRKALPP 55
AAA P W SLQ R R A P P PS PG PP R++ PP
Sbjct: 21 AAARWPGWRSLQ---RPARRSGRGGGGAAPGPYPSAAPPPPGPGPPPSRQSSPP 71
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 34.3 bits (77), Expect = 0.15
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 32 VPTPSLPERTPGNERPPRRKALPPRT----EKMAVDQDWPSVYPVAAPFKPSAVPLPVRM 87
VP ++PE+ PP+ ++ PP E++A+++ V P P V +P +
Sbjct: 10640 VPKVAVPEKKVPEAIPPKPESPPPEVFEEPEEVALEEPPAEVVEEPEPAAPPQVTVPPKK 10699
Query: 88 GYPVKKG-VPMAKEGNLELLKIP 109
P KK +AK+ L +K+P
Sbjct: 10700 PVPEKKAPAVVAKKPELPPVKVP 10722
Score = 31.6 bits (70), Expect = 1.00
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 24 TAVYSATPVPTPSLPERTPGNERPPRRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPL 83
T V P P++PE P + P RK +P + E++ P++ P + AVP+
Sbjct: 9386 TIVTQREESPPPAVPE-IPKKKVPEERKPVPRKEEEVPPPPKVPALPKKPVPEEKVAVPV 9444
Query: 84 PVRMGYP 90
PV P
Sbjct: 9445 PVAKKAP 9451
Score = 31.6 bits (70), Expect = 1.00
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 32 VPTPSLPERTPGNERPPRRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPV----RM 87
VP ++PE+ PP+ ++ PP + + P A P KP P+ V +
Sbjct: 10556 VPKAAVPEKKVPEAIPPKPESPPPEVPEAPKEVVPEKKVPAAPPKKPEVTPVKVPEAPKE 10615
Query: 88 GYPVKK-GVPMAKEGNLELLKIP 109
P KK VP K+ + K+P
Sbjct: 10616 VVPEKKVPVPPPKKPEVPPTKVP 10638
Score = 29.3 bits (64), Expect = 4.9
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 12/136 (8%)
Query: 37 LPERTPGNERPPRRKALPPRTEKMAVDQDW---PSVYPVAAPFKPSAVPLPVRMGYPVKK 93
LPE E PP + +PP E + ++++ V P P P P+P +K
Sbjct: 10141 LPEE---EEIPPEEEEVPPEEEYVPEEEEFVPEEEVLPEVKPKVPVPAPVPEIKKKVTEK 10197
Query: 94 GVPMAKEGNLELLKIPNF---LHLTPVAIKKHCEALKDFCTEWPAALDSDEKCEKHFPIE 150
V + K+ K+P + + + K E L TE P + + E+ P E
Sbjct: 10198 KVVIPKKEEAPPAKVPEVPKKVEEKRIILPKEEEVLPVEVTEEP---EEEPISEEEIPEE 10254
Query: 151 IDSTDYVSSGPSVRNP 166
S + V R P
Sbjct: 10255 PPSIEEVEEVAPPRVP 10270
>gi|166064029 angiomotin isoform 1 [Homo sapiens]
Length = 1084
Score = 34.3 bits (77), Expect = 0.15
Identities = 22/75 (29%), Positives = 31/75 (41%)
Query: 42 PGNERPPRRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEG 101
PG+ R P RTE + P Y A P + ++PL R P + G
Sbjct: 259 PGHFYSEHRLNQPGRTEGQLMRYQHPPEYGAARPAQDISLPLSARNSQPHSPTSSLTSGG 318
Query: 102 NLELLKIPNFLHLTP 116
+L LL+ P L+P
Sbjct: 319 SLPLLQSPPSTRLSP 333
>gi|31543543 retinoic acid induced 17 [Homo sapiens]
Length = 1067
Score = 34.3 bits (77), Expect = 0.15
Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 31/140 (22%)
Query: 17 RTLRAFSTAVYSATPVPTPSLPERTPGNERPPRRKALPPRTEKMAVDQDWPSVYPVAAPF 76
R R A Y +PVP P TPG+ PP ++ QD +P
Sbjct: 497 RPPRPVPVANYPHSPVPGNPTPPMTPGSSIPP----------YLSPSQDVKPPFPPDIKP 546
Query: 77 KPSAVPLP-------VRMGYPVKKGV---PMAKEGNLELLKIPNFLHLTPVAIKKHCEAL 126
SA+P P +R+ +PV+ GV P E NL + + HL P +
Sbjct: 547 NMSALPPPPANHNDELRLTFPVRDGVVLEPFRLEHNLAVSN--HVFHLRPTVHQ------ 598
Query: 127 KDFCTEWPAALDSDEKCEKH 146
W + L+ KC H
Sbjct: 599 ---TLMWRSDLELQFKCYHH 615
>gi|34915994 transducin-like enhancer protein 4 [Homo sapiens]
Length = 773
Score = 34.3 bits (77), Expect = 0.15
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 11 SLQSRARTLRAFSTAVYSATPVPTPSLPERTPGNERPPRRKALPPRTEKMAVDQDWPSVY 70
S +S+ +L ST S + PTP TPG+ P + +P + P V
Sbjct: 304 SSKSKELSLNEKSTTPVSKSNTPTPRTDAPTPGSNSTPGLRPVPGKP---------PGVD 354
Query: 71 PVAAPFK-PSAVPLPVRMGYPVKKGV 95
P+A+ + P AVP P YP G+
Sbjct: 355 PLASSLRTPMAVPCP----YPTPFGI 376
>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
Length = 1173
Score = 33.9 bits (76), Expect = 0.20
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 243 KTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVSLKNE 302
+TEA+++E I + S R + L ++ K E ++E+LG + ++S++ LK +
Sbjct: 550 QTEAELQEVISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLG---LVPMRQSIIDLKEK 606
Query: 303 E--ENENSISQYKESVKRLLN 321
E E N + ++RL N
Sbjct: 607 EIPELRNKLQNVNRDIQRLKN 627
>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
Length = 1312
Score = 33.9 bits (76), Expect = 0.20
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 243 KTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVSLKNE 302
+TEA+++E I + S R + L ++ K E ++E+LG + ++S++ LK +
Sbjct: 689 QTEAELQEVISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLG---LVPMRQSIIDLKEK 745
Query: 303 E--ENENSISQYKESVKRLLN 321
E E N + ++RL N
Sbjct: 746 EIPELRNKLQNVNRDIQRLKN 766
>gi|39725634 la related protein isoform 1 [Homo sapiens]
Length = 1019
Score = 33.5 bits (75), Expect = 0.26
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 33 PTPSLPERTPGNERPPRRKALPPRTEKMAVDQDWPSVYPVAAPFKPSAVPLPVRMGYPVK 92
P PS P R PG + A P ++ D++ P +PV APF P ++ V+
Sbjct: 24 PIPSCPGRLPGRKNSVALAAAP--RKEPTGDREKPLPFPVLAPFSNPEHSAPAKV---VR 78
Query: 93 KGVPMAKEGN 102
VP ++G+
Sbjct: 79 AAVPKQRKGS 88
>gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens]
Length = 506
Score = 33.1 bits (74), Expect = 0.34
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 14/122 (11%)
Query: 199 CKTTDVLTIKTDR------CPLRRQNYDYAVYLLTVLYHESWNTEEWEKSKTEADMEEYI 252
C D L +K L + YD ++ Y + EW E +E +
Sbjct: 118 CDKVDTLFLKAIHDLERKYAELNKPLYDRRFQIINAEYEPTEEECEWNSEDEEFSSDEEV 177
Query: 253 WENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYK-------KSVVSLKNEEEN 305
+N+ SE LE + + ++N E+ EE KEI E K K + +K EE+
Sbjct: 178 QDNTPSEMPPLEG-EEEENPKENPEVKAEEKEVPKEIPEVKDEEKEVPKEIPEVKAEEKA 236
Query: 306 EN 307
++
Sbjct: 237 DS 238
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 32.7 bits (73), Expect = 0.45
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 239 WEKSKTEADMEEYIWENSSSERNILETLLQMK---AAEKNMEINKEELLGTKEIEEYKKS 295
WEK + EE +WE R E + + + ++ M KEE + +E+EE
Sbjct: 345 WEKEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKI--RELEEKMHE 402
Query: 296 VVSLKNEEENENSISQYKESVKR 318
++ +EE + +E KR
Sbjct: 403 QEKIREQEEKRQEEEKIREQEKR 425
Score = 30.4 bits (67), Expect = 2.2
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 239 WEKSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVS 298
WEK + EE +WE R E + + + + +E E +E EE ++
Sbjct: 359 WEKEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKIRELEEKMHEQEKIREQEEKRQEEEK 418
Query: 299 LKNEEENE 306
++ +E+ +
Sbjct: 419 IREQEKRQ 426
Score = 30.4 bits (67), Expect = 2.2
Identities = 16/81 (19%), Positives = 35/81 (43%)
Query: 239 WEKSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVS 298
WEK + EE +WE R + E + + + + E +EE ++ + ++
Sbjct: 373 WEKEEKMRRQEEMMWEKEEKIRELEEKMHEQEKIREQEEKRQEEEKIREQEKRQEQEAKM 432
Query: 299 LKNEEENENSISQYKESVKRL 319
+ EE+ + +E K++
Sbjct: 433 WRQEEKIREQEEKIREQEKKM 453
>gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens]
Length = 761
Score = 32.7 bits (73), Expect = 0.45
Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 27/195 (13%)
Query: 132 EWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSLN-----LDDHA 186
+W A L D + + +E++S +G + NP + + + LN L+
Sbjct: 276 DWAAMLGEDITDDDNLELEMNSES--ENGAYLDNPPKGALKKLIHAAKLNASLKTLEGER 333
Query: 187 KKKLIKLVGERYCKTTDVLT-----IKTDRCPLRRQNYDYAVYLLTVLYHESWNTEEWEK 241
+ I+L KT + LT ++T++ L+ +N T +E+ ++ K
Sbjct: 334 NQIYIQL--SEVDKTKEELTEHIKNLQTEQASLQSEN--------THFENENQKLQQKLK 383
Query: 242 SKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVSLKN 301
TE E E + +E +++ EK +++++ T+E+E Y+K L
Sbjct: 384 VMTELYQEN---EMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETYRKRAKDL-- 438
Query: 302 EEENENSISQYKESV 316
EEE E +I Y+ +
Sbjct: 439 EEELERTIHSYQGQI 453
>gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens]
Length = 804
Score = 32.7 bits (73), Expect = 0.45
Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 27/195 (13%)
Query: 132 EWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSLN-----LDDHA 186
+W A L D + + +E++S +G + NP + + + LN L+
Sbjct: 276 DWAAMLGEDITDDDNLELEMNSES--ENGAYLDNPPKGALKKLIHAAKLNASLKTLEGER 333
Query: 187 KKKLIKLVGERYCKTTDVLT-----IKTDRCPLRRQNYDYAVYLLTVLYHESWNTEEWEK 241
+ I+L KT + LT ++T++ L+ +N T +E+ ++ K
Sbjct: 334 NQIYIQL--SEVDKTKEELTEHIKNLQTEQASLQSEN--------THFENENQKLQQKLK 383
Query: 242 SKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVSLKN 301
TE E E + +E +++ EK +++++ T+E+E Y+K L
Sbjct: 384 VMTELYQEN---EMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETYRKRAKDL-- 438
Query: 302 EEENENSISQYKESV 316
EEE E +I Y+ +
Sbjct: 439 EEELERTIHSYQGQI 453
>gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens]
Length = 775
Score = 32.7 bits (73), Expect = 0.45
Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 27/195 (13%)
Query: 132 EWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSLN-----LDDHA 186
+W A L D + + +E++S +G + NP + + + LN L+
Sbjct: 247 DWAAMLGEDITDDDNLELEMNSES--ENGAYLDNPPKGALKKLIHAAKLNASLKTLEGER 304
Query: 187 KKKLIKLVGERYCKTTDVLT-----IKTDRCPLRRQNYDYAVYLLTVLYHESWNTEEWEK 241
+ I+L KT + LT ++T++ L+ +N T +E+ ++ K
Sbjct: 305 NQIYIQL--SEVDKTKEELTEHIKNLQTEQASLQSEN--------THFENENQKLQQKLK 354
Query: 242 SKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVSLKN 301
TE E E + +E +++ EK +++++ T+E+E Y+K L
Sbjct: 355 VMTELYQEN---EMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETYRKRAKDL-- 409
Query: 302 EEENENSISQYKESV 316
EEE E +I Y+ +
Sbjct: 410 EEELERTIHSYQGQI 424
>gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens]
Length = 792
Score = 32.7 bits (73), Expect = 0.45
Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 27/195 (13%)
Query: 132 EWPAALDSDEKCEKHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSLN-----LDDHA 186
+W A L D + + +E++S +G + NP + + + LN L+
Sbjct: 264 DWAAMLGEDITDDDNLELEMNSES--ENGAYLDNPPKGALKKLIHAAKLNASLKTLEGER 321
Query: 187 KKKLIKLVGERYCKTTDVLT-----IKTDRCPLRRQNYDYAVYLLTVLYHESWNTEEWEK 241
+ I+L KT + LT ++T++ L+ +N T +E+ ++ K
Sbjct: 322 NQIYIQL--SEVDKTKEELTEHIKNLQTEQASLQSEN--------THFENENQKLQQKLK 371
Query: 242 SKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVSLKN 301
TE E E + +E +++ EK +++++ T+E+E Y+K L
Sbjct: 372 VMTELYQEN---EMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETYRKRAKDL-- 426
Query: 302 EEENENSISQYKESV 316
EEE E +I Y+ +
Sbjct: 427 EEELERTIHSYQGQI 441
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 32.7 bits (73), Expect = 0.45
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 19/85 (22%)
Query: 32 VPTPSLPERTPGNERPPR----------------RKALPPRTEKMAVDQDWPSVYPVAAP 75
+P P +P R P PPR R A P +MA WP + PV P
Sbjct: 247 LPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVPPWPPMAPV-PP 305
Query: 76 FKPSA-VPLPVRMGYPVKKGVPMAK 99
+ P A VP M PV G PMA+
Sbjct: 306 WPPMAPVPTGPPMA-PVPPGPPMAR 329
>gi|224586773 hypothetical protein LOC643854 [Homo sapiens]
Length = 777
Score = 32.3 bits (72), Expect = 0.58
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 32/154 (20%)
Query: 173 LRVKLSSLNLD-DHAKKKLIKLVGERYCKTTDVLTIKTDRCPLRRQNYDYAVYLLTVLYH 231
L V L SL + +H +L ++ + T + ++T + L+ +N +Y
Sbjct: 324 LNVSLKSLEGERNHIIIQLSEVDKTKEELTEHIKNLQTQQASLQSEN----------IYF 373
Query: 232 ESWNTEEWEKSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLG------ 285
ES N + +K K M E+ EN L + E+N I +EE L
Sbjct: 374 ESENQKLQQKLKI---MTEFYQENEMK-------LYRKLTVEENYRIEEEEKLSRVEEKI 423
Query: 286 ---TKEIEEYKKSVVSLKNEEENENSISQYKESV 316
T+E+E Y+K L EEE E ++ Y++ V
Sbjct: 424 SHATEELETYRKLAKDL--EEELERTVHFYQKQV 455
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 32.3 bits (72), Expect = 0.58
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 237 EEWEKSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSV 296
EE E+ + + EE E E+ + + + K +K E KEE+ +E+ E K+ +
Sbjct: 2255 EEREEEEVREEEEERKEEEEGEEKQVEKEEEEKK--KKKKEKKKEEVQEKEEVFEEKEEI 2312
Query: 297 VS------LKNEEENENSISQYKE 314
+S L +EEE E S S +E
Sbjct: 2313 MSEEETESLSDEEEEEESCSLEEE 2336
Score = 28.9 bits (63), Expect = 6.5
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 237 EEWEKSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSV 296
E++ E + EE+ E S + LE + + E+ +EE +E EE ++
Sbjct: 2211 EKFSSQVDEVESEEHFSEEMESLLDELEKQESLSSEEEEEREEEEE----REEEEVREEE 2266
Query: 297 VSLKNEEENENSISQYKESVKR 318
K EEE E + +E K+
Sbjct: 2267 EERKEEEEGEEKQVEKEEEEKK 2288
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 32.3 bits (72), Expect = 0.58
Identities = 15/68 (22%), Positives = 31/68 (45%)
Query: 239 WEKSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVS 298
WEK + EE +WE R + E + + + + +E E +E EE ++
Sbjct: 345 WEKEEKMRRQEEMMWEKEEKMRRLEEMMWEKEEKIRELEEKMHEQEKIREQEEKRQEEEK 404
Query: 299 LKNEEENE 306
++ +E+ +
Sbjct: 405 IREQEKRQ 412
Score = 31.2 bits (69), Expect = 1.3
Identities = 16/81 (19%), Positives = 36/81 (44%)
Query: 239 WEKSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVS 298
WEK + +EE +WE R + E + + + + E +EE ++ + ++
Sbjct: 359 WEKEEKMRRLEEMMWEKEEKIRELEEKMHEQEKIREQEEKRQEEEKIREQEKRQEQEAKM 418
Query: 299 LKNEEENENSISQYKESVKRL 319
+ EE+ + +E K++
Sbjct: 419 WRQEEKIREQEEKIREQEKKM 439
>gi|4502435 BMX non-receptor tyrosine kinase [Homo sapiens]
Length = 675
Score = 32.3 bits (72), Expect = 0.58
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 233 SWNTEEWEKSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEY 292
SW E S+ E ++++Y W + R+ E LL+ K E + +G + +
Sbjct: 276 SWEFPESSSSEEEENLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQVGMYTVSLF 335
Query: 293 KKSV 296
K+V
Sbjct: 336 SKAV 339
>gi|42544182 BMX non-receptor tyrosine kinase [Homo sapiens]
Length = 675
Score = 32.3 bits (72), Expect = 0.58
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 233 SWNTEEWEKSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIEEY 292
SW E S+ E ++++Y W + R+ E LL+ K E + +G + +
Sbjct: 276 SWEFPESSSSEEEENLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQVGMYTVSLF 335
Query: 293 KKSV 296
K+V
Sbjct: 336 SKAV 339
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 32.3 bits (72), Expect = 0.58
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 238 EWEKSKTEADMEEYIWENSS--SERNILETLLQMKAAEKNMEIN---KEELLGTKEIEEY 292
E E S+ E D ++ EN + I +T L+ E N++I KE +KEI Y
Sbjct: 821 EQETSQLEKDKKQLEKENKRLRQQAEIKDTTLE----ENNVKIGNLEKENKTLSKEIGIY 876
Query: 293 KKSVVSLKN-EEENENSISQYKESVKRLLNV 322
K+S V LK E+EN+ + + +K L+ +
Sbjct: 877 KESCVRLKELEKENKELVKRATIDIKTLVTL 907
Score = 28.9 bits (63), Expect = 6.5
Identities = 34/166 (20%), Positives = 74/166 (44%), Gaps = 13/166 (7%)
Query: 145 KHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSLNLDD-HAKKKLIKLVGERYCKTTD 203
K+ +++S + +S N R V +K +S+ + + K ++ E+ K +
Sbjct: 683 KNLTFQLESLEKENSQLDEENLELRRNVESLKCASMKMAQLQLENKELESEKEQLKKGLE 742
Query: 204 VLTI---KTDRCPLRRQNYDYAVYLLTVLYHESWNTEEWEKSKTEADMEEYIWENSSSER 260
+L KT+R + Q D L ++ + + E+++++ EN + ++
Sbjct: 743 LLKASFKKTERLEVSYQGLDIENQRL----QKTLENSNKKIQQLESELQDLEMENQTLQK 798
Query: 261 NILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVSLKNEEENE 306
N+ E + K E+ + NK T ++E+ KK + E+EN+
Sbjct: 799 NLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQL-----EKENK 839
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 32.3 bits (72), Expect = 0.58
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 238 EWEKSKTEADMEEYIWENSS--SERNILETLLQMKAAEKNMEIN---KEELLGTKEIEEY 292
E E S+ E D ++ EN + I +T L+ E N++I KE +KEI Y
Sbjct: 821 EQETSQLEKDKKQLEKENKRLRQQAEIKDTTLE----ENNVKIGNLEKENKTLSKEIGIY 876
Query: 293 KKSVVSLKN-EEENENSISQYKESVKRLLNV 322
K+S V LK E+EN+ + + +K L+ +
Sbjct: 877 KESCVRLKELEKENKELVKRATIDIKTLVTL 907
Score = 28.9 bits (63), Expect = 6.5
Identities = 34/166 (20%), Positives = 74/166 (44%), Gaps = 13/166 (7%)
Query: 145 KHFPIEIDSTDYVSSGPSVRNPRARVVVLRVKLSSLNLDD-HAKKKLIKLVGERYCKTTD 203
K+ +++S + +S N R V +K +S+ + + K ++ E+ K +
Sbjct: 683 KNLTFQLESLEKENSQLDEENLELRRNVESLKCASMKMAQLQLENKELESEKEQLKKGLE 742
Query: 204 VLTI---KTDRCPLRRQNYDYAVYLLTVLYHESWNTEEWEKSKTEADMEEYIWENSSSER 260
+L KT+R + Q D L ++ + + E+++++ EN + ++
Sbjct: 743 LLKASFKKTERLEVSYQGLDIENQRL----QKTLENSNKKIQQLESELQDLEMENQTLQK 798
Query: 261 NILETLLQMKAAEKNMEINKEELLGTKEIEEYKKSVVSLKNEEENE 306
N+ E + K E+ + NK T ++E+ KK + E+EN+
Sbjct: 799 NLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQL-----EKENK 839
>gi|8922950 meiosis-specific nuclear structural 1 [Homo sapiens]
Length = 495
Score = 32.3 bits (72), Expect = 0.58
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 24/139 (17%)
Query: 192 KLVGERYCKTTDVLTIKTDRCPLRRQ-------NYDYAVYLLTVLYHESWNTEEWEKSKT 244
KLV E YCK V +K +R Q N L +L +E +
Sbjct: 16 KLVDENYCKKLHVQALKNVNSQIRNQMVQNENDNRVQRKQFLRLLQNEQF---------- 65
Query: 245 EADMEEYIWENSSSERNILETLLQMKAAEK-NMEINK---EELLGTKEIEEYKKSVVSLK 300
E DMEE I +E N LQ+K EK ME+ K E L K ++ +++ + L+
Sbjct: 66 ELDMEEAI---QKAEENKRLKELQLKQEEKLAMELAKLKHESLKDEKMRQQVRENSIELR 122
Query: 301 NEEENENSISQYKESVKRL 319
E+ + KE ++
Sbjct: 123 ELEKKLKAAYMNKERAAQI 141
>gi|150378503 leiomodin 2 (cardiac) [Homo sapiens]
Length = 547
Score = 32.3 bits (72), Expect = 0.58
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 12 LQSRARTLRAFSTAVYSATPVPTPSLPERTPGNER--PPRRKALPPRTEKMAVDQDWPSV 69
L + +T+R+ + + P P P P P ++R PP PP EK + ++ V
Sbjct: 403 LPKKVQTVRSRPLSPVATPPPPPPPPPPPPPSSQRLPPPPPPPPPPLPEKKLITRNIAEV 462
Query: 70 YPVAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFL 112
+ + ++ G KKG + K+ N L +I N L
Sbjct: 463 IK-----QQESAQRALQNGQKKKKGKKVKKQPNSILKEIKNSL 500
>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
Length = 602
Score = 32.0 bits (71), Expect = 0.76
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 256 SSSERNILETLLQM-KAAEKNMEINKE-ELLGTKEIEEYKKSVVSLKNEEENENSISQYK 313
+S E + E L ++ K+ N+ I E + KEI + K V SL+ E N+ + K
Sbjct: 231 TSLENTVEERLTELTKSINDNIAIFTEVQKRSQKEINDMKAKVASLEESEGNKQDLKALK 290
Query: 314 ESVKRL 319
E+VK +
Sbjct: 291 EAVKEI 296
>gi|197313748 SET domain containing 2 [Homo sapiens]
Length = 2564
Score = 32.0 bits (71), Expect = 0.76
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 12 LQSRARTLRAFSTAVYS----ATPVPTPSLPERTPGNERPPRRKALPPRTEKMAVDQDWP 67
L +R L A +TAV S A P+P + E T + P PP + + P
Sbjct: 149 LHVTSRPLLATTTAVASPPTHAAPLPAV-IAESTTVDSPPSSPPPPPPPAQATTLSSPAP 207
Query: 68 SVYPVAAPFKPSAVPLPVRMGYPVKKGVPMAKE 100
PVA P P V + + PV V KE
Sbjct: 208 VTEPVALPHTPITVLMAAPVPLPVDVAVRSLKE 240
>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 32.0 bits (71), Expect = 0.76
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 237 EEWEKSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIE---EYK 293
++WE EAD+ + + SS + E + A +K +E ++E L TKEI+ E K
Sbjct: 717 QQWEMKTEEADLLQTKLQQSSYHKQQEE----LDALKKTIEESEETLKNTKEIQRKAEEK 772
Query: 294 KSVVSLKNEEENENSISQYKESVKRL 319
V+ K + + K++ K+L
Sbjct: 773 YEVLENKMKNAEAERERELKDAQKKL 798
>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 32.0 bits (71), Expect = 0.76
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 237 EEWEKSKTEADMEEYIWENSSSERNILETLLQMKAAEKNMEINKEELLGTKEIE---EYK 293
++WE EAD+ + + SS + E + A +K +E ++E L TKEI+ E K
Sbjct: 717 QQWEMKTEEADLLQTKLQQSSYHKQQEE----LDALKKTIEESEETLKNTKEIQRKAEEK 772
Query: 294 KSVVSLKNEEENENSISQYKESVKRL 319
V+ K + + K++ K+L
Sbjct: 773 YEVLENKMKNAEAERERELKDAQKKL 798
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,056,347
Number of Sequences: 37866
Number of extensions: 669878
Number of successful extensions: 3253
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 3113
Number of HSP's gapped (non-prelim): 253
length of query: 323
length of database: 18,247,518
effective HSP length: 102
effective length of query: 221
effective length of database: 14,385,186
effective search space: 3179126106
effective search space used: 3179126106
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.