Guide to the Human Genome
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Name: LMOD2 Sequence: fasta or formatted (547aa) NCBI GI: 150378503
Description:

leiomodin 2 (cardiac)

Referenced in:

Cytoskeleton

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         26           2
 C cysteine            0.4          2           1
 D aspartate           3.5         19           2
 E glutamate          12.6         69           6
 F phenylalanine       1.6          9           1
 G glycine             4.2         23           2
 H histidine           1.6          9           1
 I isoleucine          5.1         28           1
 K lysine              8.2         45           4
 L leucine             8.4         46           2
 M methionine          2.2         12           1
 N asparagine          6.0         33           2
 P proline             8.6         47          13
 Q glutamine           4.8         26           2
 R arginine            5.9         32           2
 S serine              8.8         48           3
 T threonine           6.6         36           2
 V valine              4.8         26           2
 W tryptophan          0.5          3           1
 Y tyrosine            1.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leiomodin 2 (cardiac) 
LMOD3                 0.293   leiomodin 3 (fetal) 
LMOD1                 0.250   leiomodin 1 (smooth muscle) 
TMOD2                 0.209   neuronal tropomodulin isoform a 
TMOD1                 0.200   tropomodulin 1 
TMOD3                 0.194   tropomodulin 3 (ubiquitous) 
TMOD4                 0.179   tropomodulin 4 (muscle) 
TMOD2                 0.162   neuronal tropomodulin isoform b 
FMNL2                 0.043   formin-like 2 
RAPH1                 0.042   Ras association and pleckstrin homology domains 1 is...
ENAH                  0.041   enabled homolog isoform a 
ENAH                  0.041   enabled homolog isoform b 
ACR                   0.041   acrosin precursor 
LOC645529             0.040   PREDICTED: similar to Putative acrosin-like proteas...
PCLO                  0.040   piccolo isoform 2 
PCLO                  0.040   piccolo isoform 1 
SF1                   0.038   splicing factor 1 isoform 1 
ASXL3                 0.038   additional sex combs like 3 
ZFHX4                 0.038   zinc finger homeodomain 4 
FNBP4                 0.038   formin binding protein 4 
FMNL1                 0.037   formin-like 1 
FMN1                  0.037   formin 1 
HCN2                  0.035   hyperpolarization activated cyclic nucleotide-gated...
BRD4                  0.035   bromodomain-containing protein 4 isoform long 
MYPOP                 0.035   Myb protein P42POP 
JMY                   0.034   junction-mediating and regulatory protein 
DIAPH1                0.033   diaphanous 1 isoform 2 
DIAPH1                0.033   diaphanous 1 isoform 1 
MLL4                  0.033   myeloid/lymphoid or mixed-lineage leukemia 4 
PRR12                 0.033   proline rich 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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