Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC389842 Sequence: fasta or formatted (201aa) NCBI GI: 169216776
Description:

PREDICTED: similar to RAN binding protein 1

Referenced in:

Ran and Rag

Other entries for this name:
alt mRNA [201aa] PREDICTED: similar to RAN binding protein 1
alt prot [178aa] PREDICTED: similar to RAN binding protein 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         18           2
 C cysteine            1.5          3           1
 D aspartate           7.5         15           1
 E glutamate          15.9         32           3
 F phenylalanine       3.5          7           1
 G glycine             3.0          6           1
 H histidine           3.5          7           1
 I isoleucine          3.0          6           1
 K lysine             12.4         25           2
 L leucine             8.5         17           2
 M methionine          2.5          5           2
 N asparagine          4.5          9           1
 P proline             4.0          8           1
 Q glutamine           2.5          5           1
 R arginine            4.5          9           1
 S serine              3.0          6           1
 T threonine           6.5         13           2
 V valine              2.5          5           1
 W tryptophan          2.0          4           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to RAN binding protein 1 
LOC389842             1.000   PREDICTED: similar to RAN binding protein 1 
RANBP1                0.959   RAN binding protein 1 
LOC389842             0.684   PREDICTED: similar to RAN binding protein 1 
RANBP2                0.362   RAN binding protein 2 
RGPD3                 0.288   RANBP2-like and GRIP domain containing 3 
RGPD8                 0.283   PREDICTED: RANBP2-like and GRIP domain containing 8...
RGPD5                 0.283   RANBP2-like and GRIP domain containing 5 isoform 1 [...
RGPD6                 0.283   RANBP2-like and GRIP domain containing 6 
RGPD1                 0.278   RANBP2-like and GRIP domain containing 1 
RGPD2                 0.278   RANBP2-like and GRIP domain containing 2 
RGPD4                 0.270   RANBP2-like and GRIP domain containing 4 
LOC645202             0.026   PREDICTED: hypothetical protein LOC645202 
C21orf91              0.026   early undifferentiated retina and lens isoform 1 [H...
IVL                   0.023   involucrin 
NEFH                  0.021   neurofilament, heavy polypeptide 200kDa 
LOC100294088          0.021   PREDICTED: hypothetical protein, partial 
CALD1                 0.021   caldesmon 1 isoform 1 
GCC2                  0.018   GRIP and coiled-coil domain-containing 2 
CALD1                 0.018   caldesmon 1 isoform 4 
CALD1                 0.018   caldesmon 1 isoform 3 
SPARCL1               0.018   SPARC-like 1 
SPARCL1               0.018   SPARC-like 1 
LOC283685             0.018   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100289089          0.018   PREDICTED: hypothetical protein XP_002343359 
PRUNE2                0.015   prune homolog 2 
CGN                   0.015   cingulin 
UBXN4                 0.015   UBX domain containing 2 
DDX21                 0.015   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
BRD4                  0.013   bromodomain-containing protein 4 isoform long 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press