Guide to the Human Genome
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Name: RANBP1 Sequence: fasta or formatted (201aa) NCBI GI: 4506407
Description:

RAN binding protein 1

Referenced in:

Ran and Rag

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         19           3
 C cysteine            1.5          3           1
 D aspartate           7.0         14           1
 E glutamate          16.4         33           3
 F phenylalanine       4.0          8           1
 G glycine             3.0          6           1
 H histidine           3.5          7           1
 I isoleucine          3.5          7           1
 K lysine             12.4         25           2
 L leucine             8.0         16           2
 M methionine          2.5          5           2
 N asparagine          4.5          9           1
 P proline             4.0          8           1
 Q glutamine           2.0          4           1
 R arginine            5.0         10           2
 S serine              3.5          7           1
 T threonine           5.5         11           1
 V valine              2.5          5           1
 W tryptophan          1.5          3           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAN binding protein 1 
LOC389842             0.966   PREDICTED: similar to RAN binding protein 1 
LOC389842             0.966   PREDICTED: similar to RAN binding protein 1 
LOC389842             0.653   PREDICTED: similar to RAN binding protein 1 
RANBP2                0.389   RAN binding protein 2 
RGPD8                 0.303   PREDICTED: RANBP2-like and GRIP domain containing 8...
RGPD5                 0.303   RANBP2-like and GRIP domain containing 5 isoform 1 [...
RGPD6                 0.303   RANBP2-like and GRIP domain containing 6 
RGPD3                 0.301   RANBP2-like and GRIP domain containing 3 
RGPD1                 0.298   RANBP2-like and GRIP domain containing 1 
RGPD2                 0.298   RANBP2-like and GRIP domain containing 2 
RGPD4                 0.290   RANBP2-like and GRIP domain containing 4 
LOC645202             0.031   PREDICTED: hypothetical protein LOC645202 
RANBP3                0.028   RAN binding protein 3 isoform RANBP3-b 
RANBP3                0.028   RAN binding protein 3 isoform RANBP3-a 
RANBP3                0.028   RAN binding protein 3 isoform RANBP3-d 
CALD1                 0.026   caldesmon 1 isoform 4 
CALD1                 0.026   caldesmon 1 isoform 3 
RANBP3L               0.023   RAN binding protein 3-like isoform 1 
RANBP3L               0.023   RAN binding protein 3-like isoform 2 
LOC100294088          0.023   PREDICTED: hypothetical protein, partial 
CALD1                 0.023   caldesmon 1 isoform 1 
SPARCL1               0.021   SPARC-like 1 
SPARCL1               0.021   SPARC-like 1 
GCC2                  0.021   GRIP and coiled-coil domain-containing 2 
LOC100289089          0.021   PREDICTED: hypothetical protein XP_002343359 
MYH3                  0.021   myosin, heavy chain 3, skeletal muscle, embryonic [H...
RNF20                 0.021   ring finger protein 20 
CGN                   0.018   cingulin 
C21orf91              0.018   early undifferentiated retina and lens isoform 1 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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