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Search of human proteins with 169216749
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169216749 PREDICTED: similar to Putative paraneoplastic
antigen-like protein 6B-like protein [Homo sapiens]
(340 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169216749 PREDICTED: similar to Putative paraneoplastic antig... 679 0.0
gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [H... 678 0.0
gi|169217313 PREDICTED: similar to paraneoplastic antigen MA1 [H... 192 5e-49
gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [H... 192 5e-49
gi|239746976 PREDICTED: similar to paraneoplastic antigen MA1 [H... 192 5e-49
gi|169216507 PREDICTED: similar to hCG1645335 [Homo sapiens] 176 3e-44
gi|169216732 PREDICTED: similar to hCG1645335 [Homo sapiens] 176 3e-44
gi|239746974 PREDICTED: hypothetical protein XP_002343900 [Homo ... 122 4e-28
gi|187607308 paraneoplastic antigen like 6A [Homo sapiens] 122 4e-28
gi|239746972 PREDICTED: hypothetical protein XP_002343899 [Homo ... 121 1e-27
gi|239746970 PREDICTED: hypothetical protein XP_002343898 [Homo ... 121 1e-27
gi|142976816 paraneoplastic cancer-testis-brain antigen [Homo sa... 110 1e-24
gi|156766054 PNMA-like 1 isoform b [Homo sapiens] 109 4e-24
gi|39780597 PNMA-like 1 isoform a [Homo sapiens] 109 4e-24
gi|11464969 paraneoplastic antigen MA2 [Homo sapiens] 102 5e-22
gi|156766066 paraneoplastic antigen like 5 [Homo sapiens] 99 4e-21
gi|156766064 paraneoplastic antigen like 5 [Homo sapiens] 99 4e-21
gi|24308384 paraneoplastic antigen like 5 [Homo sapiens] 99 4e-21
gi|52486265 paraneoplastic antigen MA1 [Homo sapiens] 97 2e-20
gi|146219841 PNMA-like 2 [Homo sapiens] 92 9e-19
gi|19923584 modulator of apoptosis 1 [Homo sapiens] 91 1e-18
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 66 5e-11
gi|48762934 alpha 2 type I collagen [Homo sapiens] 65 7e-11
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 64 1e-10
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 64 1e-10
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 64 1e-10
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 64 3e-10
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 62 7e-10
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 62 7e-10
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 62 1e-09
>gi|169216749 PREDICTED: similar to Putative paraneoplastic
antigen-like protein 6B-like protein [Homo sapiens]
Length = 340
Score = 679 bits (1753), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL
Sbjct: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGD 120
GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGD
Sbjct: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGD 120
Query: 121 GGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAG 180
GGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAG
Sbjct: 121 GGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAG 180
Query: 181 DTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARGTNVTRAWVQPRRCTLQAVLENRAYQE 240
DTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARGTNVTRAWVQPRRCTLQAVLENRAYQE
Sbjct: 181 DTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARGTNVTRAWVQPRRCTLQAVLENRAYQE 240
Query: 241 LRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRWLLESLGGPALDVVSGLLE 300
LRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRWLLESLGGPALDVVSGLLE
Sbjct: 241 LRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRWLLESLGGPALDVVSGLLE 300
Query: 301 EDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFLT 340
EDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFLT
Sbjct: 301 EDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFLT 340
>gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [Homo
sapiens]
Length = 340
Score = 678 bits (1749), Expect = 0.0
Identities = 339/340 (99%), Positives = 340/340 (100%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL
Sbjct: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGD 120
GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGD
Sbjct: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGD 120
Query: 121 GGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAG 180
GGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAG
Sbjct: 121 GGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAG 180
Query: 181 DTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARGTNVTRAWVQPRRCTLQAVLENRAYQE 240
DTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARGTNVTRAWVQPRRCTLQAVLENRAYQE
Sbjct: 181 DTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARGTNVTRAWVQPRRCTLQAVLENRAYQE 240
Query: 241 LRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRWLLESLGGPALDVVSGLLE 300
LRPFSGREQPGC+EESFESWMEHAKDMLQLWYHASERERKRWLLESLGGPALDVVSGLLE
Sbjct: 241 LRPFSGREQPGCEEESFESWMEHAKDMLQLWYHASERERKRWLLESLGGPALDVVSGLLE 300
Query: 301 EDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFLT 340
EDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFLT
Sbjct: 301 EDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFLT 340
>gi|169217313 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 601
Score = 192 bits (487), Expect = 5e-49
Identities = 95/98 (96%), Positives = 97/98 (98%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
+ALAML+DWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL
Sbjct: 191 IALAMLQDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 250
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQAL 98
GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQ L
Sbjct: 251 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQTL 288
Score = 148 bits (373), Expect = 8e-36
Identities = 75/113 (66%), Positives = 88/113 (77%), Gaps = 7/113 (6%)
Query: 228 TLQAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRWLLESL 287
TL+ +++ AY+ELRPFSGREQPGC EESFESW+E AKDMLQLW HASERER+R LL+SL
Sbjct: 287 TLRPLVKTMAYRELRPFSGREQPGCVEESFESWLEDAKDMLQLWCHASERERRRRLLDSL 346
Query: 288 GGPALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFLT 340
G ALD+VSGLLEEDP+ +A DC LGQ F +RD MTSR+KFLT
Sbjct: 347 DGLALDIVSGLLEEDPDFSAQDC-------LTALGQVFRSRDTWMTSRMKFLT 392
Score = 30.8 bits (68), Expect = 1.8
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 141 AEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEA 200
A A G A+ A GA GG G A+ + +EGA G G VG A
Sbjct: 47 AGALGRCQIAASAVGA-RGGPGP----AQGPQREEEGAPGCRSLVGRGWGVGWAAVAEVQ 101
Query: 201 GAAGEAGAVGEARGTNVTRAWV 222
G GE GA G + A V
Sbjct: 102 GTVGERGACAFGGGRGLLAAGV 123
>gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 541
Score = 192 bits (487), Expect = 5e-49
Identities = 95/98 (96%), Positives = 97/98 (98%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
+ALAML+DWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL
Sbjct: 131 IALAMLQDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 190
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQAL 98
GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQ L
Sbjct: 191 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQTL 228
Score = 148 bits (373), Expect = 8e-36
Identities = 75/113 (66%), Positives = 88/113 (77%), Gaps = 7/113 (6%)
Query: 228 TLQAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRWLLESL 287
TL+ +++ AY+ELRPFSGREQPGC EESFESW+E AKDMLQLW HASERER+R LL+SL
Sbjct: 227 TLRPLVKTMAYRELRPFSGREQPGCVEESFESWLEDAKDMLQLWCHASERERRRRLLDSL 286
Query: 288 GGPALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFLT 340
G ALD+VSGLLEEDP+ +A DC LGQ F +RD MTSR+KFLT
Sbjct: 287 DGLALDIVSGLLEEDPDFSAQDC-------LTALGQVFRSRDTWMTSRMKFLT 332
>gi|239746976 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 601
Score = 192 bits (487), Expect = 5e-49
Identities = 95/98 (96%), Positives = 97/98 (98%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
+ALAML+DWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL
Sbjct: 191 IALAMLQDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 250
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQAL 98
GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQ L
Sbjct: 251 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQTL 288
Score = 148 bits (373), Expect = 8e-36
Identities = 75/113 (66%), Positives = 88/113 (77%), Gaps = 7/113 (6%)
Query: 228 TLQAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRWLLESL 287
TL+ +++ AY+ELRPFSGREQPGC EESFESW+E AKDMLQLW HASERER+R LL+SL
Sbjct: 287 TLRPLVKTMAYRELRPFSGREQPGCVEESFESWLEDAKDMLQLWCHASERERRRRLLDSL 346
Query: 288 GGPALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFLT 340
G ALD+VSGLLEEDP+ +A DC LGQ F +RD MTSR+KFLT
Sbjct: 347 DGLALDIVSGLLEEDPDFSAQDC-------LTALGQVFRSRDTWMTSRMKFLT 392
Score = 31.6 bits (70), Expect = 1.1
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 141 AEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEA 200
A A G A+ A GA GG G A+ + +EGA G G VG A
Sbjct: 47 AGALGRCQIAASAVGA-RGGPGP----AQGPQREEEGAPGCRSLVGRGWGVGWAAVAEVQ 101
Query: 201 GAAGEAGAVGEARGTNVTRAWV 222
G GE GA+ G + A V
Sbjct: 102 GTVGERGALAFGGGRGLLAAGV 123
>gi|169216507 PREDICTED: similar to hCG1645335 [Homo sapiens]
Length = 409
Score = 176 bits (446), Expect = 3e-44
Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 7/111 (6%)
Query: 230 QAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRWLLESLGG 289
Q VLENRAY+ELRPFS REQPGC+EESFESW+EHAKDMLQLW HASERE+KRWLLESLGG
Sbjct: 96 QPVLENRAYRELRPFSRREQPGCEEESFESWVEHAKDMLQLWCHASEREKKRWLLESLGG 155
Query: 290 PALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFLT 340
PAL+VVSGLLEED NL+ALDC A LGQ F N+D RMTSRLKFLT
Sbjct: 156 PALEVVSGLLEEDTNLSALDC-------LAALGQVFRNQDTRMTSRLKFLT 199
Score = 166 bits (419), Expect = 4e-41
Identities = 83/96 (86%), Positives = 86/96 (89%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MALAMLRDWCR MG NAERSLLIL IPDDC+EHEFQEAVRAALSPLGRYRVL K FRKEL
Sbjct: 1 MALAMLRDWCRWMGANAERSLLILGIPDDCKEHEFQEAVRAALSPLGRYRVLTKHFRKEL 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQ 96
GA+AALVEFAE LN+SLIP QI G GGPWKVI LPQ
Sbjct: 61 GAKAALVEFAEYLNRSLIPHQIPGNGGPWKVIFLPQ 96
Score = 31.2 bits (69), Expect = 1.4
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 125 GAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGP 184
G A A + A+A+ G+ASEA E A E AR + G++ P
Sbjct: 290 GVAWAAAPVESEDPAAAQASPAQGNASEAGPGAEDAAEAASATKEAARGAPAAGEGESAP 349
Query: 185 AGEAEAVGEA 194
AG E +G+A
Sbjct: 350 AG-PEGLGQA 358
>gi|169216732 PREDICTED: similar to hCG1645335 [Homo sapiens]
Length = 409
Score = 176 bits (446), Expect = 3e-44
Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 7/111 (6%)
Query: 230 QAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRWLLESLGG 289
Q VLENRAY+ELRPFS REQPGC+EESFESW+EHAKDMLQLW HASERE+KRWLLESLGG
Sbjct: 96 QPVLENRAYRELRPFSRREQPGCEEESFESWVEHAKDMLQLWCHASEREKKRWLLESLGG 155
Query: 290 PALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFLT 340
PAL+VVSGLLEED NL+ALDC A LGQ F N+D RMTSRLKFLT
Sbjct: 156 PALEVVSGLLEEDTNLSALDC-------LAALGQVFRNQDTRMTSRLKFLT 199
Score = 166 bits (419), Expect = 4e-41
Identities = 83/96 (86%), Positives = 86/96 (89%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MALAMLRDWCR MG NAERSLLIL IPDDC+EHEFQEAVRAALSPLGRYRVL K FRKEL
Sbjct: 1 MALAMLRDWCRWMGANAERSLLILGIPDDCKEHEFQEAVRAALSPLGRYRVLTKHFRKEL 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQ 96
GA+AALVEFAE LN+SLIP QI G GGPWKVI LPQ
Sbjct: 61 GAKAALVEFAEYLNRSLIPHQIPGNGGPWKVIFLPQ 96
Score = 31.2 bits (69), Expect = 1.4
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 125 GAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGP 184
G A A + A+A+ G+ASEA E A E AR + G++ P
Sbjct: 290 GVAWAAAPVESEDPAAAQASPAQGNASEAGPGAEDAAEAASATKEAARGAPAAGEGESAP 349
Query: 185 AGEAEAVGEA 194
AG E +G+A
Sbjct: 350 AG-PEGLGQA 358
>gi|239746974 PREDICTED: hypothetical protein XP_002343900 [Homo
sapiens]
Length = 399
Score = 122 bits (307), Expect = 4e-28
Identities = 58/102 (56%), Positives = 75/102 (73%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MA+ ML+DWCR MGVNA R LLIL IP+DC++ EFQE++ AAL P+G + VL KVFR+E
Sbjct: 1 MAVTMLQDWCRWMGVNARRGLLILGIPEDCDDAEFQESLEAALRPMGHFTVLGKVFREED 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEF 102
A AALVE +N +L+PR+I G GGPW V+ +P+ EF
Sbjct: 61 NATAALVELDREVNYALVPREIPGTGGPWNVVFVPRCSGEEF 102
Score = 96.7 bits (239), Expect = 3e-20
Identities = 57/134 (42%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 208 AVGEARGTNVTRA-WVQPRRCTLQAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKD 266
+V A G + R W++ +Q +E YQ L FSGR+QP EESFE W++H +
Sbjct: 121 SVAGALGVGLRRVCWLRSIGQAVQPWVEAVRYQSLGVFSGRDQPAPGEESFEVWLDHTTE 180
Query: 267 MLQLWYHASERERKRWLLESLGGPALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFG 326
ML +W SERER+R LLE L G AL +V LL E+P A DC A L Q FG
Sbjct: 181 MLHVWQGVSERERRRRLLEGLRGTALQLVHALLAENPARTAQDC-------LAALAQVFG 233
Query: 327 NRDPRMTSRLKFLT 340
+ + + T R+K LT
Sbjct: 234 DNESQATIRVKCLT 247
>gi|187607308 paraneoplastic antigen like 6A [Homo sapiens]
Length = 399
Score = 122 bits (307), Expect = 4e-28
Identities = 58/102 (56%), Positives = 75/102 (73%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MA+ ML+DWCR MGVNA R LLIL IP+DC++ EFQE++ AAL P+G + VL KVFR+E
Sbjct: 1 MAVTMLQDWCRWMGVNARRGLLILGIPEDCDDAEFQESLEAALRPMGHFTVLGKVFREED 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEF 102
A AALVE +N +L+PR+I G GGPW V+ +P+ EF
Sbjct: 61 NATAALVELDREVNYALVPREIPGTGGPWNVVFVPRCSGEEF 102
Score = 96.7 bits (239), Expect = 3e-20
Identities = 57/134 (42%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 208 AVGEARGTNVTRA-WVQPRRCTLQAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKD 266
+V A G + R W++ +Q +E YQ L FSGR+QP EESFE W++H +
Sbjct: 121 SVAGALGVGLRRVCWLRSIGQAVQPWVEAVRYQSLGVFSGRDQPAPGEESFEVWLDHTTE 180
Query: 267 MLQLWYHASERERKRWLLESLGGPALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFG 326
ML +W SERER+R LLE L G AL +V LL E+P A DC A L Q FG
Sbjct: 181 MLHVWQGVSERERRRRLLEGLRGTALQLVHALLAENPARTAQDC-------LAALAQVFG 233
Query: 327 NRDPRMTSRLKFLT 340
+ + + T R+K LT
Sbjct: 234 DNESQATIRVKCLT 247
>gi|239746972 PREDICTED: hypothetical protein XP_002343899 [Homo
sapiens]
Length = 399
Score = 121 bits (303), Expect = 1e-27
Identities = 57/102 (55%), Positives = 74/102 (72%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MA+ ML+DWCR MGVNA R LLIL IP+DC++ EFQE++ AAL P+G + VL K FR+E
Sbjct: 1 MAVTMLQDWCRWMGVNARRGLLILGIPEDCDDAEFQESLEAALRPMGHFTVLGKAFREED 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEF 102
A AALVE +N +L+PR+I G GGPW V+ +P+ EF
Sbjct: 61 NATAALVELDREVNYALVPREIPGTGGPWNVVFVPRCSGEEF 102
Score = 93.2 bits (230), Expect = 3e-19
Identities = 56/134 (41%), Positives = 74/134 (55%), Gaps = 8/134 (5%)
Query: 208 AVGEARGTNVTRA-WVQPRRCTLQAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKD 266
+V A G + R W++ +Q +E Q L FSGR+QP EESFE W++H +
Sbjct: 121 SVAGALGVGLRRVCWLRSIGQAVQPWVEAVRCQSLGVFSGRDQPAPGEESFEVWLDHTTE 180
Query: 267 MLQLWYHASERERKRWLLESLGGPALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFG 326
ML +W SERER+R LLE L G AL +V LL E+P A DC A L Q FG
Sbjct: 181 MLHVWQGVSERERRRRLLEGLRGTALQLVHALLAENPARTAQDC-------LAALAQVFG 233
Query: 327 NRDPRMTSRLKFLT 340
+ + + T R+K LT
Sbjct: 234 DNESQATIRVKCLT 247
>gi|239746970 PREDICTED: hypothetical protein XP_002343898 [Homo
sapiens]
Length = 399
Score = 121 bits (303), Expect = 1e-27
Identities = 57/102 (55%), Positives = 74/102 (72%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MA+ ML+DWCR MGVNA R LLIL IP+DC++ EFQE++ AAL P+G + VL K FR+E
Sbjct: 1 MAVTMLQDWCRWMGVNARRGLLILGIPEDCDDAEFQESLEAALRPMGHFTVLGKAFREED 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEF 102
A AALVE +N +L+PR+I G GGPW V+ +P+ EF
Sbjct: 61 NATAALVELDREVNYALVPREIPGTGGPWNVVFVPRCSGEEF 102
Score = 93.2 bits (230), Expect = 3e-19
Identities = 56/134 (41%), Positives = 74/134 (55%), Gaps = 8/134 (5%)
Query: 208 AVGEARGTNVTRA-WVQPRRCTLQAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKD 266
+V A G + R W++ +Q +E Q L FSGR+QP EESFE W++H +
Sbjct: 121 SVAGALGVGLRRVCWLRSIGQAVQPWVEAVRCQSLGVFSGRDQPAPGEESFEVWLDHTTE 180
Query: 267 MLQLWYHASERERKRWLLESLGGPALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFG 326
ML +W SERER+R LLE L G AL +V LL E+P A DC A L Q FG
Sbjct: 181 MLHVWQGVSERERRRRLLEGLRGTALQLVHALLAENPARTAQDC-------LAALAQVFG 233
Query: 327 NRDPRMTSRLKFLT 340
+ + + T R+K LT
Sbjct: 234 DNESQATIRVKCLT 247
>gi|142976816 paraneoplastic cancer-testis-brain antigen [Homo
sapiens]
Length = 463
Score = 110 bits (276), Expect = 1e-24
Identities = 51/102 (50%), Positives = 73/102 (71%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
M L +L+DWCR +N R +LIL IP+DC E EF+E ++ A LGRYRV+ ++FR+E
Sbjct: 1 MPLTLLQDWCRGEHLNTRRCMLILGIPEDCGEDEFEETLQEACRHLGRYRVIGRMFRREE 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEF 102
A+A L+E A+ ++ +L+PR+I GKGGPW+VI P+ D EF
Sbjct: 61 NAQAILLELAQDIDYALLPREIPGKGGPWEVIVKPRNSDGEF 102
Score = 72.4 bits (176), Expect = 5e-13
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 221 WVQPRRCTLQAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERK 280
W Q +Q +LE Y+ELR FSG +F++W+EH +MLQ+W E E++
Sbjct: 144 WAQTLGAAVQPLLEQMLYRELRVFSGNTISIPGALAFDAWLEHTTEMLQMW-QVPEGEKR 202
Query: 281 RWLLESLGGPALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLK 337
R L+E L GPAL VVSGL + ++ +C A L Q FG + +++K
Sbjct: 203 RRLMECLRGPALQVVSGLRASNASITVEEC-------LAALQQVFGPVESHKIAQVK 252
>gi|156766054 PNMA-like 1 isoform b [Homo sapiens]
Length = 378
Score = 109 bits (272), Expect = 4e-24
Identities = 51/102 (50%), Positives = 68/102 (66%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MA+ +L DWCR M V+ RSLL+ IP+DC + E +E + LSPLG YRVL K+F +E
Sbjct: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEF 102
+AAL+E EG+N S IPR+ G+GG W+V+ DAEF
Sbjct: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEF 106
>gi|39780597 PNMA-like 1 isoform a [Homo sapiens]
Length = 439
Score = 109 bits (272), Expect = 4e-24
Identities = 51/102 (50%), Positives = 68/102 (66%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MA+ +L DWCR M V+ RSLL+ IP+DC + E +E + LSPLG YRVL K+F +E
Sbjct: 5 MAMNLLEDWCRGMEVDIHRSLLVTGIPEDCGQAEIEETLNGVLSPLGPYRVLNKIFVREE 64
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEF 102
+AAL+E EG+N S IPR+ G+GG W+V+ DAEF
Sbjct: 65 NVKAALIEVGEGVNLSTIPREFPGRGGVWRVVCRDPTQDAEF 106
>gi|11464969 paraneoplastic antigen MA2 [Homo sapiens]
Length = 364
Score = 102 bits (254), Expect = 5e-22
Identities = 51/102 (50%), Positives = 66/102 (64%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MALA+L DWCR M V+ ++SL++ IP D EE E QE ++ L LGRYR+L K+FRK+
Sbjct: 1 MALALLEDWCRIMSVDEQKSLMVTGIPADFEEAEIQEVLQETLKSLGRYRLLGKIFRKQE 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEF 102
A A L+E E + S IP ++ GKGG WKVI D EF
Sbjct: 61 NANAVLLELLEDTDVSAIPSEVQGKGGVWKVIFKTPNQDTEF 102
Score = 75.1 bits (183), Expect = 8e-14
Identities = 38/102 (37%), Positives = 64/102 (62%), Gaps = 8/102 (7%)
Query: 238 YQELRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRWLLESLGGPALDVVSG 297
Y++LR FSG P +EESFE W+E A ++++ W +E E+KRWL ESL GPALD++
Sbjct: 162 YRKLRVFSGSAVPAPEEESFEVWLEQATEIVKEW-PVTEAEKKRWLAESLRGPALDLMHI 220
Query: 298 LLEEDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFL 339
+ ++P+++ +C Q FG+ + R T+++++L
Sbjct: 221 VQADNPSISVEEC-------LEAFKQVFGSLESRRTAQVRYL 255
>gi|156766066 paraneoplastic antigen like 5 [Homo sapiens]
Length = 448
Score = 99.4 bits (246), Expect = 4e-21
Identities = 46/102 (45%), Positives = 68/102 (66%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MAL +L DWC+ M ++ ++LLI+ IP +C E E Q+ V+A L PL YRVL ++FR+E
Sbjct: 1 MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEF 102
A+A +E A+ +N + +P I GKGG W+V+ P+ D EF
Sbjct: 61 NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEF 102
Score = 67.0 bits (162), Expect = 2e-11
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 8/117 (6%)
Query: 223 QPRRCTLQAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRW 282
Q R L+ E+ Y++L+ FSG P EE+FE W+E +++ +W SE E++R
Sbjct: 141 QVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLEQVTEIMPIW-QVSEVEKRRR 199
Query: 283 LLESLGGPALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFL 339
LLESL GPAL ++ L + ++ C LD L Q FG+++ S+ +FL
Sbjct: 200 LLESLRGPALSIMRVLQANNDSITVEQC---LD----ALKQIFGDKEDFRASQFRFL 249
>gi|156766064 paraneoplastic antigen like 5 [Homo sapiens]
Length = 448
Score = 99.4 bits (246), Expect = 4e-21
Identities = 46/102 (45%), Positives = 68/102 (66%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MAL +L DWC+ M ++ ++LLI+ IP +C E E Q+ V+A L PL YRVL ++FR+E
Sbjct: 1 MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEF 102
A+A +E A+ +N + +P I GKGG W+V+ P+ D EF
Sbjct: 61 NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEF 102
Score = 67.0 bits (162), Expect = 2e-11
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 8/117 (6%)
Query: 223 QPRRCTLQAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRW 282
Q R L+ E+ Y++L+ FSG P EE+FE W+E +++ +W SE E++R
Sbjct: 141 QVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLEQVTEIMPIW-QVSEVEKRRR 199
Query: 283 LLESLGGPALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFL 339
LLESL GPAL ++ L + ++ C LD L Q FG+++ S+ +FL
Sbjct: 200 LLESLRGPALSIMRVLQANNDSITVEQC---LD----ALKQIFGDKEDFRASQFRFL 249
>gi|24308384 paraneoplastic antigen like 5 [Homo sapiens]
Length = 448
Score = 99.4 bits (246), Expect = 4e-21
Identities = 46/102 (45%), Positives = 68/102 (66%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MAL +L DWC+ M ++ ++LLI+ IP +C E E Q+ V+A L PL YRVL ++FR+E
Sbjct: 1 MALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRVLGRMFRRED 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEF 102
A+A +E A+ +N + +P I GKGG W+V+ P+ D EF
Sbjct: 61 NAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEF 102
Score = 67.0 bits (162), Expect = 2e-11
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 8/117 (6%)
Query: 223 QPRRCTLQAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRW 282
Q R L+ E+ Y++L+ FSG P EE+FE W+E +++ +W SE E++R
Sbjct: 141 QVRSPPLEPPKESMWYRKLKVFSGTASPSPGEETFEDWLEQVTEIMPIW-QVSEVEKRRR 199
Query: 283 LLESLGGPALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFL 339
LLESL GPAL ++ L + ++ C LD L Q FG+++ S+ +FL
Sbjct: 200 LLESLRGPALSIMRVLQANNDSITVEQC---LD----ALKQIFGDKEDFRASQFRFL 249
>gi|52486265 paraneoplastic antigen MA1 [Homo sapiens]
Length = 353
Score = 97.4 bits (241), Expect = 2e-20
Identities = 47/102 (46%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MA+ +L DWCR M VN++R+LL+ IP +C+E E +E ++AA+ P YR+L ++F +E
Sbjct: 1 MAMTLLEDWCRGMDVNSQRALLVWGIPVNCDEAEIEETLQAAM-PQVSYRMLGRMFWREE 59
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEF 102
A+AAL+E ++ + IPR++ GKGG WKV+ P DAEF
Sbjct: 60 NAKAALLELTGAVDYAAIPREMPGKGGVWKVLFKPPTSDAEF 101
Score = 75.1 bits (183), Expect = 8e-14
Identities = 40/111 (36%), Positives = 66/111 (59%), Gaps = 8/111 (7%)
Query: 229 LQAVLENRAYQELRPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRWLLESLG 288
+Q ++E+ Y+ L FSGR+ PG EE+F+ W+EH ++L+ W S+ E++R L+ESL
Sbjct: 149 IQPLVESIWYKRLTLFSGRDIPGPGEETFDPWLEHTNEVLEEW-QVSDVEKRRRLMESLR 207
Query: 289 GPALDVVSGLLEEDPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFL 339
GPA DV+ L +P + +C L+ Q FG+ + +++KFL
Sbjct: 208 GPAADVIRILKSNNPAITTAECLKALE-------QVFGSVESSRDAQIKFL 251
>gi|146219841 PNMA-like 2 [Homo sapiens]
Length = 635
Score = 91.7 bits (226), Expect = 9e-19
Identities = 66/203 (32%), Positives = 95/203 (46%), Gaps = 18/203 (8%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
MA+++L+DWCR + V+A R+LL+ IP+ E+ + + ++ L PLG +R+
Sbjct: 1 MAMSLLQDWCRSLDVDAHRALLVTGIPEGLEQADVEAVLQPTLLPLGTFRLRHMKALMNE 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAE---------FQDIPSEAGA 111
A+AALVEF E +N + IPR+I GK G W+V+ +A D D P++A
Sbjct: 61 KAQAALVEFVEDVNHAAIPREIPGKDGVWRVLWKDRAQDTRVLRQMRRLLLDDGPTQAAE 120
Query: 112 AGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEA 171
AG EA A+ ET A G E TG+ GS A G
Sbjct: 121 AGTPGEAPTPPAS-------ETQAQDSG--EVTGQAGSLLGAARNPRRGRRGRRNRTRRN 171
Query: 172 RESDEGAAGDTGPAGEAEAVGEA 194
R + +G G A A EA
Sbjct: 172 RLTQKGKKRSRGGRPSAPARSEA 194
Score = 30.4 bits (67), Expect = 2.4
Identities = 35/129 (27%), Positives = 44/129 (34%), Gaps = 6/129 (4%)
Query: 99 DAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGE 158
+ E +D SEA E E+ G G A T G + A G G
Sbjct: 512 EEESEDTESEAS---EPEDRASRKPRAKRARTAPRGLTPAG-APPTASGARKTRAGGRGR 567
Query: 159 GGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARGTNVT 218
G + A + + AAG G A A A A GEA G+ ARG
Sbjct: 568 GRGVTPEKKAGSRGSAQDDAAGSRKKKGSAGAGAHARA-GEAKGQAPTGSKA-ARGKKAR 625
Query: 219 RAWVQPRRC 227
R P +C
Sbjct: 626 RGRRLPPKC 634
>gi|19923584 modulator of apoptosis 1 [Homo sapiens]
Length = 351
Score = 90.9 bits (224), Expect = 1e-18
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 1 MALAMLRDWCRRMGVNAERSLLILDIPDDCEEHEFQEAVRAALSPLGRYRVLIKVFRKEL 60
M L +L DWCR M +N ++LLI I C E +EA++A L+PLG YR+L ++FR++
Sbjct: 1 MTLRLLEDWCRGMDMNPRKALLIAGISQSCSVAEIEEALQAGLAPLGEYRLLGRMFRRDE 60
Query: 61 GARAALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGD 120
+ ALV + +L+P++I GKGG W+VI P D F +E AGE G+
Sbjct: 61 NRKVALVGLTAETSHALVPKEIPGKGGIWRVIFKPPDPDNTFLSRLNEF-LAGEGMTVGE 119
Score = 72.0 bits (175), Expect = 7e-13
Identities = 55/159 (34%), Positives = 77/159 (48%), Gaps = 16/159 (10%)
Query: 185 AGEAEAVGEAG-AVGEAGAA--GEAGAVGEARGTNVTRAWVQPRRCTLQAVLENRAYQEL 241
AGE VGE A+G + E G + E + +A LQ L+ Y++L
Sbjct: 111 AGEGMTVGELSRALGHENGSLDPEQGMIPEMWAPMLAQALE-----ALQPALQCLKYKKL 165
Query: 242 RPFSGREQPGCKEESFESWMEHAKDMLQLWYHASERERKRWLLESLGGPALDVVSGLLEE 301
R FSGRE P EE F WM H M++ W + E++R LLESL GPALDV+ L
Sbjct: 166 RVFSGRESPEPGEEEFGRWMFHTTQMIKAW-QVPDVEKRRRLLESLRGPALDVIRVLKIN 224
Query: 302 DPNLAALDCQVLLDCWAAVLGQAFGNRDPRMTSRLKFLT 340
+P + +C L+ + FG D ++K+LT
Sbjct: 225 NPLITVDECLQALE-------EVFGVTDNPRELQVKYLT 256
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 65.9 bits (159), Expect = 5e-11
Identities = 43/106 (40%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDEL 165
P GAAGE +AG+ G G GA+G G GEA A G G A A GE G
Sbjct: 583 PGPKGAAGEPGKAGERGVPGPPGAVGPAGK--DGEAGAQGPPGPAGPAGERGEQGPAGS- 639
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
+G G GP GEA GE G G+ GA G +GA GE
Sbjct: 640 -------PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGE 678
Score = 65.9 bits (159), Expect = 5e-11
Identities = 42/107 (39%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDEL 165
P AGA G++ E+G G AG GA G G +GE G G A G+ GA E
Sbjct: 772 PGPAGAPGDKGESGPSGPAGPTGARGAPG--DRGEPGPPGPAGFAGPPGADGQPGAKGE- 828
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
D GA GD GP G A G G +G GA G GA G A
Sbjct: 829 -------PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSA 868
Score = 65.1 bits (157), Expect = 9e-11
Identities = 44/115 (38%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-------GEAEATGEGGSASEAEGAG- 157
P +AGA G+ G G AG G IG GA G G ATG G+A G
Sbjct: 829 PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGP 888
Query: 158 EGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
G AG +E +G G+TGPAG VG G G AG G GA G A
Sbjct: 889 SGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPA 943
Score = 62.8 bits (151), Expect = 4e-10
Identities = 45/107 (42%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGGA-GD 163
P AG G EAG G AG GA G TG+ G G TG G A + G G G
Sbjct: 514 PGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGA 573
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ +GAAG+ G AGE G GAVG AG GEAGA G
Sbjct: 574 RGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQG 620
Score = 62.4 bits (150), Expect = 6e-10
Identities = 45/140 (32%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 79 PRQIAGKGGPWKVISLP-QALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG 137
P+ IAG+ G V+ LP Q + F +P +G G++ +G G G G +G G G
Sbjct: 951 PQGIAGQRG---VVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAG 1007
Query: 138 K-GEAEATG----EGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVG 192
GE+ G EG + +G G+ GA G GPAG++ G
Sbjct: 1008 PPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRG 1067
Query: 193 EAGAVGEAGAAGEAGAVGEA 212
E G G AG G GA G A
Sbjct: 1068 ETGPAGPAGPVGPVGARGPA 1087
Score = 60.5 bits (145), Expect = 2e-09
Identities = 43/112 (38%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Query: 103 QDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGG- 160
Q +P E GAAG GD G AG GA G G G +G G G A GE G
Sbjct: 727 QGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGP 786
Query: 161 AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+G D G G GPAG A G G G G G+AGA G+A
Sbjct: 787 SGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDA 838
Score = 58.5 bits (140), Expect = 8e-09
Identities = 40/112 (35%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-------KGEAEATGEGGSASEAEGAGE 158
P AGAAG G G GA GA G G G +G + G GG +GE
Sbjct: 376 PGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGE 435
Query: 159 GGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
GA + D GA G+ GP G G AG G+ GA GE G G
Sbjct: 436 PGA--------PGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTG 479
Score = 58.2 bits (139), Expect = 1e-08
Identities = 42/113 (37%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGS-------ASEAEGAG 157
P + G G E G GA G AGA G GA G G TG G ++ E
Sbjct: 298 PGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGP 357
Query: 158 EGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+G G E G AG GPAG A G+ GA G GA G AGA G
Sbjct: 358 QGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPG 410
Score = 57.0 bits (136), Expect = 2e-08
Identities = 40/116 (34%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-------GEAEATGEGGSASEAEGAGE 158
P EAG GE+ GD GA G +GA GE G G+ G A G G+ G+
Sbjct: 652 PGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGD 711
Query: 159 GGA----GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
GA G + + + GAAG GP G+ G GA G G G G G
Sbjct: 712 AGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTG 767
Score = 56.6 bits (135), Expect = 3e-08
Identities = 41/115 (35%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGG---- 160
P G AG + AG+ G+ G AG G G G+ GEA G G G G
Sbjct: 496 PGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGP 555
Query: 161 ---AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
AG + R G AG G G A GE G GE G G GAVG A
Sbjct: 556 PGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPA 610
Score = 55.8 bits (133), Expect = 5e-08
Identities = 40/107 (37%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDEL 165
P AG G G GA G AG +G G G A GE G A E G GA
Sbjct: 556 PGPAGQDGRPGPPGPPGARGQAGVMGFPGPKG-----AAGEPGKAGERGVPGPPGAVGP- 609
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
++ +G G GPAGE G AG+ G G G AG GEA
Sbjct: 610 -AGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEA 655
Score = 55.8 bits (133), Expect = 5e-08
Identities = 40/106 (37%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGGAGDELRVA 168
GA G + GD GA GA G+ G G G GE A G G + AG GA
Sbjct: 701 GAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGA------- 753
Query: 169 EEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARG 214
+ +G G TGP G G G GE+G +G AG G ARG
Sbjct: 754 -DGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTG-ARG 797
Score = 55.1 bits (131), Expect = 9e-08
Identities = 40/106 (37%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDELR 166
EAG G E G G GA G G G G KG +G G+ +A AG G
Sbjct: 234 EAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKG------ 287
Query: 167 VAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
E + GA G GP G G GA G AGA G GA G A
Sbjct: 288 --EPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAA 331
Score = 54.7 bits (130), Expect = 1e-07
Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAG----EGG 160
P G AG+ + G+ G AG AG +G GA G G G+ G E G G
Sbjct: 1054 PGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGF 1113
Query: 161 AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+G + ++G +G +GPAG G AGA G+ G G G +G
Sbjct: 1114 SGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIG 1163
Score = 53.9 bits (128), Expect = 2e-07
Identities = 40/107 (37%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDE 164
P GA G G GG G G GE GA G KG+ A GE G +G G AG+E
Sbjct: 409 PGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVG-VQGP-PGPAGEE 466
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
+ + G G GP GE G G G G AG G GE
Sbjct: 467 ---GKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGE 510
Score = 53.5 bits (127), Expect = 3e-07
Identities = 41/109 (37%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDE 164
P G G + E G G G G GE G G +GE TG G E G G G
Sbjct: 439 PGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGA 498
Query: 165 LRVAEEARESDEGAAGD---TGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
VA +G AG+ GPAG + GEAG GEAG G G G
Sbjct: 499 DGVA-----GPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 542
Score = 53.5 bits (127), Expect = 3e-07
Identities = 40/112 (35%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEGGSASEAEGAG-EGG 160
P G AG+E G G G AG GE G G GE + G G A G +G
Sbjct: 895 PGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGI 954
Query: 161 AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
AG V + + G G GP+GE G +GA GE G G G G A
Sbjct: 955 AGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLA 1006
Score = 53.1 bits (126), Expect = 3e-07
Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGA-GDEL 165
+AG AG + E G G GA G +G G G +G A G G+ G G G
Sbjct: 279 DAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTG 338
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
GA G+ GP G + G G GE G G AGA G A
Sbjct: 339 PAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPA 385
Score = 50.1 bits (118), Expect = 3e-06
Identities = 45/138 (32%), Positives = 49/138 (35%), Gaps = 16/138 (11%)
Query: 79 PRQIAGKGGPWKVISLPQALDAEFQDIPSEA----GAAGEEEEAGDGGAAGAAGAIGETG 134
P AG GP + P A A P A GAAG G G AG G G G
Sbjct: 843 PAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAG 902
Query: 135 AVG-KGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGE 193
G KG TG G E G G E +G+ G GPAG G
Sbjct: 903 KEGGKGPRGETGPAGRPGEVGPPGPPGPAGE-----------KGSPGADGPAGAPGTPGP 951
Query: 194 AGAVGEAGAAGEAGAVGE 211
G G+ G G G GE
Sbjct: 952 QGIAGQRGVVGLPGQRGE 969
Score = 43.9 bits (102), Expect = 2e-04
Identities = 35/110 (31%), Positives = 42/110 (38%), Gaps = 6/110 (5%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATG----EGGSASEAEGAGEGG 160
+P G +G G GA G G G G GE A+G G + +G
Sbjct: 177 VPGPMGPSGPRGLPGPPGAPGPQGFQGPPGE--PGEPGASGPMGPRGPPGPPGKNGDDGE 234
Query: 161 AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
AG R E +GA G G AG G G G GA G+AG G
Sbjct: 235 AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAG 284
Score = 33.9 bits (76), Expect = 0.21
Identities = 30/113 (26%), Positives = 37/113 (32%), Gaps = 9/113 (7%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATG------EGGSASEAEGAGE 158
IP + G G G G G G + G E G G S
Sbjct: 134 IPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPP 193
Query: 159 GGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
G G + + GA+G GP G G G G+ G AG+ G GE
Sbjct: 194 GAPGPQGFQGPPGEPGEPGASGPMGPRGPP---GPPGKNGDDGEAGKPGRPGE 243
Score = 33.9 bits (76), Expect = 0.21
Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGGA----G 162
+ G GE+ + G G G +G G G G GE +G G A G GA G
Sbjct: 1095 DKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDG 1154
Query: 163 DELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGA 202
G GD GP G G G G A
Sbjct: 1155 LNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSA 1194
Score = 29.3 bits (64), Expect = 5.3
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 176 EGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
EG GDTGP G G AG G G G+ G G
Sbjct: 111 EGPKGDTGPRGPR---GPAGPPGRDGIPGQPGLPG 142
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 65.5 bits (158), Expect = 7e-11
Identities = 54/158 (34%), Positives = 64/158 (40%), Gaps = 29/158 (18%)
Query: 82 IAGKGGPWKVISLP--QALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGE------- 132
+ G GP + P + L EF +P AG GE G+ GAAG G IG
Sbjct: 557 LPGPSGPAGEVGKPGERGLHGEF-GLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPP 615
Query: 133 -----------TGAVG----KGEAEATGEGGSASEAEGAGEGGA----GDELRVAEEARE 173
GAVG G + GE G+A G GE G G+ +
Sbjct: 616 GPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGAR 675
Query: 174 SDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
GA G GPAG GEAGA G AG AG G+ GE
Sbjct: 676 GAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGE 713
Score = 65.1 bits (157), Expect = 9e-11
Identities = 48/133 (36%), Positives = 56/133 (42%), Gaps = 3/133 (2%)
Query: 79 PRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG- 137
P KG P V ++ A + +P E GAAG G+ G G G IG G G
Sbjct: 615 PGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGA 674
Query: 138 KGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAV 197
+G A G G A GE GA A G G+ GPAG G AGA
Sbjct: 675 RGAPGAVGAPGPAGATGDRGEAGAAGPAGPA--GPRGSPGERGEVGPAGPNGFAGPAGAA 732
Query: 198 GEAGAAGEAGAVG 210
G+ GA GE GA G
Sbjct: 733 GQPGAKGERGAKG 745
Score = 60.8 bits (146), Expect = 2e-09
Identities = 43/114 (37%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDEL 165
P AGA G+ EAG G AG AG G G +GE G G A A AG+ GA E
Sbjct: 684 PGPAGATGDRGEAGAAGPAGPAGPRGSPGE--RGEVGPAGPNGFAGPAGAAGQPGAKGER 741
Query: 166 RV----AEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARGT 215
E G G GPAG G AG+ G+ G G G G A T
Sbjct: 742 GAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRT 795
Score = 59.3 bits (142), Expect = 5e-09
Identities = 42/109 (38%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGA-GD 163
P GA G +G G G GA G G G KGE GE G+ G GA G
Sbjct: 624 PGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGA 683
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+ GAAG GPAG + GE G VG AG G AG G A
Sbjct: 684 PGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAA 732
Score = 57.8 bits (138), Expect = 1e-08
Identities = 47/131 (35%), Positives = 55/131 (41%), Gaps = 12/131 (9%)
Query: 83 AGKGGPWKVISLPQALDAEF--QDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-G 139
AG GP + LP L P G G + AG G AGA G G G G G
Sbjct: 276 AGPAGPRGEVGLP-GLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVG 334
Query: 140 EAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGE 199
A ATG G E AG G E + + G+AG GP G + G+ G GE
Sbjct: 335 AAGATGARGLVGEPGPAGSKG--------ESGNKGEPGSAGPQGPPGPSGEEGKRGPNGE 386
Query: 200 AGAAGEAGAVG 210
AG+AG G G
Sbjct: 387 AGSAGPPGPPG 397
Score = 56.2 bits (134), Expect = 4e-08
Identities = 41/107 (38%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGE-GGAGD 163
P G G E G G GA G GE G VG G A A G GS AG G AG
Sbjct: 195 PGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGP 254
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ + GA G+ GPAG A GE G G +G G G G
Sbjct: 255 PGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPG 301
Score = 55.8 bits (133), Expect = 5e-08
Identities = 49/140 (35%), Positives = 52/140 (37%), Gaps = 38/140 (27%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGE------------AEATGEGGSASEAE 154
E G AG AG GAAG GA GE GA G KGE A G G A
Sbjct: 716 EVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAG 775
Query: 155 GAGEGG----------------------AGDELRVAEEARESDEGAAGDTGPAGEAEAVG 192
G+GG +G +E G GD GP G G
Sbjct: 776 SRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGR---TG 832
Query: 193 EAGAVGEAGAAGEAGAVGEA 212
E GAVG G AGE G GEA
Sbjct: 833 EVGAVGPPGFAGEKGPSGEA 852
Score = 55.8 bits (133), Expect = 5e-08
Identities = 45/134 (33%), Positives = 53/134 (39%), Gaps = 14/134 (10%)
Query: 79 PRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK 138
P G GGP + P A A P +G +G G G G G G+ G VG+
Sbjct: 773 PAGSRGDGGPPGMTGFPGA--AGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGR 830
Query: 139 -GEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAV 197
GE A G G A E +GE G G G G G +G G+
Sbjct: 831 TGEVGAVGPPGFAGEKGPSGEAGTA-----------GPPGTPGPQGLLGAPGILGLPGSR 879
Query: 198 GEAGAAGEAGAVGE 211
GE G G AGAVGE
Sbjct: 880 GERGLPGVAGAVGE 893
Score = 55.8 bits (133), Expect = 5e-08
Identities = 37/108 (34%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 109 AGAAGEEEEAGDGGAAGAAGAIGETGAVG----KGEAEATGEGGSASEAEGAGEGGAGDE 164
AG G E G G G AGA+G G G +G+ GE G G G
Sbjct: 972 AGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGL 1031
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+A D+GA G GPAG G +G G+ G G G VG A
Sbjct: 1032 PGIA--GHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPA 1077
Score = 54.7 bits (130), Expect = 1e-07
Identities = 45/137 (32%), Positives = 57/137 (41%), Gaps = 16/137 (11%)
Query: 83 AGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEA 141
AGK GP + LP +D P G AG E G+ G G G G+ G G KG A
Sbjct: 462 AGKEGP---VGLP-GIDGR----PGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHA 513
Query: 142 EATG-------EGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEA 194
G +G + ++ +G G + +G G +GPAGE GE
Sbjct: 514 GLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGER 573
Query: 195 GAVGEAGAAGEAGAVGE 211
G GE G G AG GE
Sbjct: 574 GLHGEFGLPGPAGPRGE 590
Score = 53.9 bits (128), Expect = 2e-07
Identities = 39/115 (33%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEGGSASEAEGAGEGGA 161
P AG+ GE G+ G+AG G G +G GK GEA + G G G G
Sbjct: 348 PGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGL 407
Query: 162 -GDELRVAEEARESDEGAAGDT---GPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
G + R GA+G GP G+A GE G +G G G G +G A
Sbjct: 408 PGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPA 462
Score = 53.1 bits (126), Expect = 3e-07
Identities = 41/112 (36%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEGGSASEAEGAGEGG 160
+P G G G G GA G GE GA G+ G+ A G G G G
Sbjct: 173 LPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAG 232
Query: 161 A-GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
A G + V G+AG G G GE GAVG AG AG AG GE
Sbjct: 233 ARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGE 284
Score = 53.1 bits (126), Expect = 3e-07
Identities = 37/113 (32%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDEL 165
P G G+ + GD G AG AGA G G G A+ G + G+G G
Sbjct: 495 PGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQ----GPPGPQGVQGGKGEQGPPG 550
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARGTNVT 218
+ G AG+ G GE GE G G AG GE G GE+ T
Sbjct: 551 PPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPT 603
Score = 53.1 bits (126), Expect = 3e-07
Identities = 40/104 (38%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGGAGDELRVA 168
G GE+ G G G G G G VGK GE GE G A GE G E
Sbjct: 541 GGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGE---- 596
Query: 169 EEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
GAAG TGP G G G G G G GAVG A
Sbjct: 597 -------SGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTA 633
Score = 52.4 bits (124), Expect = 6e-07
Identities = 42/116 (36%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGK----------GEAEATGEGGSASEAEGAG-E 158
G +GEE + G G AG+AG G G G G A G GS + AG
Sbjct: 373 GPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVR 432
Query: 159 GGAGDELRVAEEARESDEG---AAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
G GD R E G + G+ GPAG+ VG G G G G AGA GE
Sbjct: 433 GPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGE 488
Score = 52.0 bits (123), Expect = 8e-07
Identities = 46/155 (29%), Positives = 57/155 (36%), Gaps = 27/155 (17%)
Query: 84 GKGGPWKVISLPQALDAEF----QDIPSEAGAAGEEEE---AGDGGAAGAAGAIGETGAV 136
G GP ++ P L + +P AGA GE AG GA G GA+G G
Sbjct: 859 GTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVN 918
Query: 137 GK-GEAEATGEGGSASEAEGAGE-------------------GGAGDELRVAEEARESDE 176
G GEA G G+ G+ G G V + +
Sbjct: 919 GAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNR 978
Query: 177 GAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
G G +GP G A AVG G G G G+ G GE
Sbjct: 979 GETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGE 1013
Score = 51.6 bits (122), Expect = 1e-06
Identities = 46/135 (34%), Positives = 51/135 (37%), Gaps = 29/135 (21%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG----KGEAEATGEGGSASEAEGAGE--- 158
P AGA G + G G AG G+ G G G KGE A G G A A GE
Sbjct: 228 PGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGL 287
Query: 159 ----GGAGDELRVAEEARESDEGAAG---------------DTGPAGEAEAVGEAGAVGE 199
G G +GAAG GP G A A G G VGE
Sbjct: 288 PGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGE 347
Query: 200 ---AGAAGEAGAVGE 211
AG+ GE+G GE
Sbjct: 348 PGPAGSKGESGNKGE 362
Score = 51.6 bits (122), Expect = 1e-06
Identities = 36/103 (34%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAG-EGGAGDELRV 167
G AG + G G G GA G TG G G + G G A + G G G R
Sbjct: 772 GPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRT 831
Query: 168 AEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
E G AG+ GP+GEA G G G G G G +G
Sbjct: 832 GEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILG 874
Score = 45.8 bits (107), Expect = 5e-05
Identities = 39/119 (32%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEG-----------GSASEAEGAGE 158
G G + E G G G G G G G A+ G+G G AG
Sbjct: 48 GPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGA 107
Query: 159 GGA-GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE--ARG 214
G G + E G AG GPAG GE G G+ G GE G VG ARG
Sbjct: 108 PGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARG 166
Score = 45.4 bits (106), Expect = 7e-05
Identities = 40/141 (28%), Positives = 52/141 (36%), Gaps = 21/141 (14%)
Query: 92 ISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEG 147
++L A Q+ G AG+ G+ G G G GE G G G G G
Sbjct: 15 VTLCLATCQSLQEETVRKGPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLG 74
Query: 148 GS-ASEAEGAG----------------EGGAGDELRVAEEARESDEGAAGDTGPAGEAEA 190
G+ A++ +G G G AG + + G G TGPAG
Sbjct: 75 GNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGP 134
Query: 191 VGEAGAVGEAGAAGEAGAVGE 211
G G GE G G+ G GE
Sbjct: 135 AGPPGKAGEDGHPGKPGRPGE 155
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 64.3 bits (155), Expect = 1e-10
Identities = 42/116 (36%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----------GEAEATGEGGSASEAEG 155
P EAG G + E G+ G AG GA G GA G G G+ G E
Sbjct: 1278 PGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP 1337
Query: 156 AGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
AG+ G G ++ + D G G GP+GEA G G G GAAG G GE
Sbjct: 1338 AGQDGVG-----GDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1388
Score = 56.2 bits (134), Expect = 4e-08
Identities = 46/161 (28%), Positives = 62/161 (38%), Gaps = 16/161 (9%)
Query: 61 GARAALVEFAEGLNQSLIPRQ---IAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEE 117
G++ + E Q+++ + + G GP + P + P +GA GE +
Sbjct: 515 GSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGG-----PGSSGAKGESGD 569
Query: 118 AGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGG-------AGDELRVAE 169
G G G G G TG GK G A G G E G+ G GD+ E
Sbjct: 570 PGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE 629
Query: 170 EARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ G GD G GE +G G GEAG G G G
Sbjct: 630 RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRG 670
Score = 55.1 bits (131), Expect = 9e-08
Identities = 54/171 (31%), Positives = 67/171 (39%), Gaps = 30/171 (17%)
Query: 71 EGLNQSLIPRQIAGKGGPWKVIS------LPQALDAEF-------QDIPSEAGAAGEEEE 117
EG P+ I+GK GP + LP A A Q P G+ GE
Sbjct: 1017 EGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGS 1076
Query: 118 AGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEA-----EG-------AGEGGA--- 161
AG G G G G G G GE A GE G A +G AG G+
Sbjct: 1077 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1136
Query: 162 -GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
GD+ + E ++ +G G+ GP G G GA G AG GE G G+
Sbjct: 1137 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQ 1187
Score = 54.7 bits (130), Expect = 1e-07
Identities = 39/108 (36%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAG-EGGAGDE 164
P E G AG++ GD G G G G G GEA G G AG EG G++
Sbjct: 1332 PGEPGPAGQDGVGGDKGEDGDPGQPGPPGP--SGEAGPPGPPGKRGPPGAAGAEGRQGEK 1389
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
E E G G GP G A G G G G GE G G A
Sbjct: 1390 GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAA 1437
Score = 53.5 bits (127), Expect = 3e-07
Identities = 38/103 (36%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEAT-GEGGSASEAEGAGEGGAGDELRVA 168
G GE+ E GD G G G G G G A+ G GS G GE G
Sbjct: 1216 GPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKG-----EPG 1270
Query: 169 EEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
E G AG GP GE GEAG G AG G G G+
Sbjct: 1271 EAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1313
Score = 52.8 bits (125), Expect = 4e-07
Identities = 38/110 (34%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEGGSASEAEGAGEGG 160
+P AG AG E GD G G G G G G+ G G G+ A G GE G
Sbjct: 1124 LPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPG 1183
Query: 161 AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ + ++ DEGA G GP G G G GE G G+ G +G
Sbjct: 1184 PRGQQGMF--GQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMG 1231
Score = 52.8 bits (125), Expect = 4e-07
Identities = 43/108 (39%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEA----TGEGGSASEAEGAG-EGGAG 162
EAG G + G GAAGA G GE GA G+ AE TG G A G EG G
Sbjct: 1364 EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRG 1423
Query: 163 DELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
V E+ GAAG GP G G G G+ G+ GE G G
Sbjct: 1424 IPGPVGEQGLP---GAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPG 1468
Score = 51.6 bits (122), Expect = 1e-06
Identities = 38/104 (36%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDELRVA 168
GAAG+E GD G G +G G G G GE G G+ GEG G V
Sbjct: 1012 GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLK--GGEGPQGPPGPVG 1069
Query: 169 EEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
G AG G G G G GE GA GE G G A
Sbjct: 1070 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1113
Score = 51.2 bits (121), Expect = 1e-06
Identities = 37/105 (35%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG----KGEAEATGEGGSASEAEGAGEGGAGDEL 165
G G++ E GD G G G GE G G +G A G G E GE GA E
Sbjct: 1342 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGA--EG 1399
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ +G AG GP G G G G GAAG+ G G
Sbjct: 1400 PPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPG 1444
Score = 48.9 bits (115), Expect = 6e-06
Identities = 48/156 (30%), Positives = 63/156 (40%), Gaps = 12/156 (7%)
Query: 59 ELGARA-ALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEE 117
E GA+ A E G + P+ AGK GP + +P + Q +P GAAG++
Sbjct: 1388 EKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGE--QGLP---GAAGQDGP 1442
Query: 118 AGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDE 176
G G G G G+ G+ G KG G G E +G GD + +
Sbjct: 1443 PGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGE-----QGEKGDRGLPGTQGSPGAK 1497
Query: 177 GAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
G G GPAG G G G G G G+ G A
Sbjct: 1498 GDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPA 1533
Score = 48.5 bits (114), Expect = 8e-06
Identities = 35/106 (33%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDELR 166
E G G++ G G GA G G G +G +G GE G + G G
Sbjct: 1181 EPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPP---- 1236
Query: 167 VAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+ GA G GP G +VG G GE G AG G GEA
Sbjct: 1237 -GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEA 1281
Score = 48.1 bits (113), Expect = 1e-05
Identities = 36/107 (33%), Positives = 41/107 (38%), Gaps = 2/107 (1%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASE-AEGAGEGGAGD 163
P G G+ E G G G G IG G G KG G GS E E G GD
Sbjct: 744 PGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGD 803
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ G G+ GP G G G G +G AGE G +G
Sbjct: 804 MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLG 850
Score = 47.4 bits (111), Expect = 2e-05
Identities = 36/116 (31%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 109 AGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGA------ 161
AG G + G G G+ GA G TG G KG + G G E G G
Sbjct: 885 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGP 944
Query: 162 -------GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G + + + G G TGP G VG G GE G GE G G
Sbjct: 945 KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPG 1000
Score = 47.0 bits (110), Expect = 2e-05
Identities = 42/141 (29%), Positives = 55/141 (39%), Gaps = 10/141 (7%)
Query: 79 PRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG- 137
PR + G+ GP ++ A Q P AG G G+ G G G G+ G G
Sbjct: 653 PRGLPGEAGPRGLLGPRGTPGAPGQ--PGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGP 710
Query: 138 ------KGEAEATGEGGSASEAEGAGEGGA-GDELRVAEEARESDEGAAGDTGPAGEAEA 190
+G GE G + AG GA G +E + ++GA G GP G
Sbjct: 711 QGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 770
Query: 191 VGEAGAVGEAGAAGEAGAVGE 211
G G G G G G+ GE
Sbjct: 771 PGPRGVKGADGVRGLKGSKGE 791
Score = 46.6 bits (109), Expect = 3e-05
Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-------KGEAEATGEGGSASEAEGAG- 157
P + G +GE+ G G G G G G G KG GE G G
Sbjct: 747 PGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGL 806
Query: 158 EGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+G G+ ++ + EG G GP G+ G+AG G+ G G G G
Sbjct: 807 KGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG 859
Score = 44.3 bits (103), Expect = 2e-04
Identities = 34/105 (32%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEGGSASEAEGAGEGGAGDEL 165
G GE G G G G G G GK G GE G + G GG
Sbjct: 925 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV---- 980
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+G G+TGP GE G G GE G G AG G
Sbjct: 981 -------VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 1018
Score = 43.9 bits (102), Expect = 2e-04
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDELRVA 168
G G + G G G+ G GE G G KG+ G+ G + GE G
Sbjct: 772 GPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGP------- 824
Query: 169 EEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
E + G GD GP+G+A G+ G G G G G G
Sbjct: 825 -EGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 865
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETG-AVGKGEAEATGEGGSASEAEGAGEGG---- 160
P + G+ G++ E G G G G +G G A G GE G+ G + G G
Sbjct: 1146 PGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1205
Query: 161 ---AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARG 214
G + + + G G GP G G G G G G G+VG G
Sbjct: 1206 PGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGG 1262
Score = 43.5 bits (101), Expect = 3e-04
Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 6/108 (5%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDE 164
P G +G + G G G G G G G KG G+ G GE G
Sbjct: 912 PGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ-- 969
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+ G G GP GE +GE G G G GE G G A
Sbjct: 970 ---GKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAA 1014
Score = 42.0 bits (97), Expect = 8e-04
Identities = 36/115 (31%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-------KGEAEATGEGGSASEAEGAG- 157
P G G + GD GA G G G G G KGE G G G
Sbjct: 1182 PGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGP 1241
Query: 158 EGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+G G + G G+ G GEA G G G G GE G GEA
Sbjct: 1242 QGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEA 1296
Score = 40.0 bits (92), Expect = 0.003
Identities = 39/135 (28%), Positives = 49/135 (36%), Gaps = 29/135 (21%)
Query: 77 LIPRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAV 136
++P + G G IS A +A+ Q I +A A G G G G G V
Sbjct: 506 MLPFRYGGDGSKGPTIS---AQEAQAQAILQQARIALR-------GPPGPMGLTGRPGPV 555
Query: 137 GKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGA 196
G G G S ++ E G G G G GP G+ G GA
Sbjct: 556 G-------GPGSSGAKGESGDPGPQGPR------------GVQGPPGPTGKPGKRGRPGA 596
Query: 197 VGEAGAAGEAGAVGE 211
G G GE GA G+
Sbjct: 597 DGGRGMPGEPGAKGD 611
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 64.3 bits (155), Expect = 1e-10
Identities = 42/116 (36%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----------GEAEATGEGGSASEAEG 155
P EAG G + E G+ G AG GA G GA G G G+ G E
Sbjct: 1227 PGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP 1286
Query: 156 AGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
AG+ G G ++ + D G G GP+GEA G G G GAAG G GE
Sbjct: 1287 AGQDGVG-----GDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1337
Score = 56.2 bits (134), Expect = 4e-08
Identities = 46/161 (28%), Positives = 62/161 (38%), Gaps = 16/161 (9%)
Query: 61 GARAALVEFAEGLNQSLIPRQ---IAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEE 117
G++ + E Q+++ + + G GP + P + P +GA GE +
Sbjct: 464 GSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGG-----PGSSGAKGESGD 518
Query: 118 AGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGG-------AGDELRVAE 169
G G G G G TG GK G A G G E G+ G GD+ E
Sbjct: 519 PGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE 578
Query: 170 EARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ G GD G GE +G G GEAG G G G
Sbjct: 579 RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRG 619
Score = 55.1 bits (131), Expect = 9e-08
Identities = 54/171 (31%), Positives = 67/171 (39%), Gaps = 30/171 (17%)
Query: 71 EGLNQSLIPRQIAGKGGPWKVIS------LPQALDAEF-------QDIPSEAGAAGEEEE 117
EG P+ I+GK GP + LP A A Q P G+ GE
Sbjct: 966 EGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGS 1025
Query: 118 AGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEA-----EG-------AGEGGA--- 161
AG G G G G G G GE A GE G A +G AG G+
Sbjct: 1026 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1085
Query: 162 -GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
GD+ + E ++ +G G+ GP G G GA G AG GE G G+
Sbjct: 1086 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQ 1136
Score = 54.7 bits (130), Expect = 1e-07
Identities = 39/108 (36%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAG-EGGAGDE 164
P E G AG++ GD G G G G G GEA G G AG EG G++
Sbjct: 1281 PGEPGPAGQDGVGGDKGEDGDPGQPGPPGP--SGEAGPPGPPGKRGPPGAAGAEGRQGEK 1338
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
E E G G GP G A G G G G GE G G A
Sbjct: 1339 GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAA 1386
Score = 53.5 bits (127), Expect = 3e-07
Identities = 38/103 (36%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEAT-GEGGSASEAEGAGEGGAGDELRVA 168
G GE+ E GD G G G G G G A+ G GS G GE G
Sbjct: 1165 GPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKG-----EPG 1219
Query: 169 EEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
E G AG GP GE GEAG G AG G G G+
Sbjct: 1220 EAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1262
Score = 52.8 bits (125), Expect = 4e-07
Identities = 38/110 (34%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEGGSASEAEGAGEGG 160
+P AG AG E GD G G G G G G+ G G G+ A G GE G
Sbjct: 1073 LPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPG 1132
Query: 161 AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ + ++ DEGA G GP G G G GE G G+ G +G
Sbjct: 1133 PRGQQGMF--GQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMG 1180
Score = 52.8 bits (125), Expect = 4e-07
Identities = 43/108 (39%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEA----TGEGGSASEAEGAG-EGGAG 162
EAG G + G GAAGA G GE GA G+ AE TG G A G EG G
Sbjct: 1313 EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRG 1372
Query: 163 DELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
V E+ GAAG GP G G G G+ G+ GE G G
Sbjct: 1373 IPGPVGEQGLP---GAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPG 1417
Score = 51.6 bits (122), Expect = 1e-06
Identities = 38/104 (36%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDELRVA 168
GAAG+E GD G G +G G G G GE G G+ GEG G V
Sbjct: 961 GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLK--GGEGPQGPPGPVG 1018
Query: 169 EEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
G AG G G G G GE GA GE G G A
Sbjct: 1019 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1062
Score = 51.2 bits (121), Expect = 1e-06
Identities = 37/105 (35%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG----KGEAEATGEGGSASEAEGAGEGGAGDEL 165
G G++ E GD G G G GE G G +G A G G E GE GA E
Sbjct: 1291 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGA--EG 1348
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ +G AG GP G G G G GAAG+ G G
Sbjct: 1349 PPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPG 1393
Score = 48.9 bits (115), Expect = 6e-06
Identities = 48/156 (30%), Positives = 63/156 (40%), Gaps = 12/156 (7%)
Query: 59 ELGARA-ALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEE 117
E GA+ A E G + P+ AGK GP + +P + Q +P GAAG++
Sbjct: 1337 EKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGE--QGLP---GAAGQDGP 1391
Query: 118 AGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDE 176
G G G G G+ G+ G KG G G E +G GD + +
Sbjct: 1392 PGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGE-----QGEKGDRGLPGTQGSPGAK 1446
Query: 177 GAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
G G GPAG G G G G G G+ G A
Sbjct: 1447 GDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPA 1482
Score = 48.5 bits (114), Expect = 8e-06
Identities = 35/106 (33%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDELR 166
E G G++ G G GA G G G +G +G GE G + G G
Sbjct: 1130 EPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPP---- 1185
Query: 167 VAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+ GA G GP G +VG G GE G AG G GEA
Sbjct: 1186 -GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEA 1230
Score = 48.1 bits (113), Expect = 1e-05
Identities = 36/107 (33%), Positives = 41/107 (38%), Gaps = 2/107 (1%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASE-AEGAGEGGAGD 163
P G G+ E G G G G IG G G KG G GS E E G GD
Sbjct: 693 PGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGD 752
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ G G+ GP G G G G +G AGE G +G
Sbjct: 753 MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLG 799
Score = 47.4 bits (111), Expect = 2e-05
Identities = 36/116 (31%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 109 AGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGA------ 161
AG G + G G G+ GA G TG G KG + G G E G G
Sbjct: 834 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGP 893
Query: 162 -------GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G + + + G G TGP G VG G GE G GE G G
Sbjct: 894 KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPG 949
Score = 47.0 bits (110), Expect = 2e-05
Identities = 42/141 (29%), Positives = 55/141 (39%), Gaps = 10/141 (7%)
Query: 79 PRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG- 137
PR + G+ GP ++ A Q P AG G G+ G G G G+ G G
Sbjct: 602 PRGLPGEAGPRGLLGPRGTPGAPGQ--PGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGP 659
Query: 138 ------KGEAEATGEGGSASEAEGAGEGGA-GDELRVAEEARESDEGAAGDTGPAGEAEA 190
+G GE G + AG GA G +E + ++GA G GP G
Sbjct: 660 QGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 719
Query: 191 VGEAGAVGEAGAAGEAGAVGE 211
G G G G G G+ GE
Sbjct: 720 PGPRGVKGADGVRGLKGSKGE 740
Score = 46.6 bits (109), Expect = 3e-05
Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-------KGEAEATGEGGSASEAEGAG- 157
P + G +GE+ G G G G G G G KG GE G G
Sbjct: 696 PGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGL 755
Query: 158 EGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+G G+ ++ + EG G GP G+ G+AG G+ G G G G
Sbjct: 756 KGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG 808
Score = 44.3 bits (103), Expect = 2e-04
Identities = 34/105 (32%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEGGSASEAEGAGEGGAGDEL 165
G GE G G G G G G GK G GE G + G GG
Sbjct: 874 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV---- 929
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+G G+TGP GE G G GE G G AG G
Sbjct: 930 -------VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 967
Score = 43.9 bits (102), Expect = 2e-04
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDELRVA 168
G G + G G G+ G GE G G KG+ G+ G + GE G
Sbjct: 721 GPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGP------- 773
Query: 169 EEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
E + G GD GP+G+A G+ G G G G G G
Sbjct: 774 -EGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 814
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETG-AVGKGEAEATGEGGSASEAEGAGEGG---- 160
P + G+ G++ E G G G G +G G A G GE G+ G + G G
Sbjct: 1095 PGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1154
Query: 161 ---AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARG 214
G + + + G G GP G G G G G G G+VG G
Sbjct: 1155 PGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGG 1211
Score = 43.5 bits (101), Expect = 3e-04
Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 6/108 (5%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDE 164
P G +G + G G G G G G G KG G+ G GE G
Sbjct: 861 PGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ-- 918
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+ G G GP GE +GE G G G GE G G A
Sbjct: 919 ---GKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAA 963
Score = 42.0 bits (97), Expect = 8e-04
Identities = 36/115 (31%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-------KGEAEATGEGGSASEAEGAG- 157
P G G + GD GA G G G G G KGE G G G
Sbjct: 1131 PGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGP 1190
Query: 158 EGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+G G + G G+ G GEA G G G G GE G GEA
Sbjct: 1191 QGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEA 1245
Score = 40.0 bits (92), Expect = 0.003
Identities = 39/135 (28%), Positives = 49/135 (36%), Gaps = 29/135 (21%)
Query: 77 LIPRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAV 136
++P + G G IS A +A+ Q I +A A G G G G G V
Sbjct: 455 MLPFRYGGDGSKGPTIS---AQEAQAQAILQQARIALR-------GPPGPMGLTGRPGPV 504
Query: 137 GKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGA 196
G G G S ++ E G G G G GP G+ G GA
Sbjct: 505 G-------GPGSSGAKGESGDPGPQGPR------------GVQGPPGPTGKPGKRGRPGA 545
Query: 197 VGEAGAAGEAGAVGE 211
G G GE GA G+
Sbjct: 546 DGGRGMPGEPGAKGD 560
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 64.3 bits (155), Expect = 1e-10
Identities = 42/116 (36%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----------GEAEATGEGGSASEAEG 155
P EAG G + E G+ G AG GA G GA G G G+ G E
Sbjct: 1266 PGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP 1325
Query: 156 AGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
AG+ G G ++ + D G G GP+GEA G G G GAAG G GE
Sbjct: 1326 AGQDGVG-----GDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGE 1376
Score = 56.2 bits (134), Expect = 4e-08
Identities = 46/161 (28%), Positives = 62/161 (38%), Gaps = 16/161 (9%)
Query: 61 GARAALVEFAEGLNQSLIPRQ---IAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEE 117
G++ + E Q+++ + + G GP + P + P +GA GE +
Sbjct: 503 GSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGG-----PGSSGAKGESGD 557
Query: 118 AGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGG-------AGDELRVAE 169
G G G G G TG GK G A G G E G+ G GD+ E
Sbjct: 558 PGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGE 617
Query: 170 EARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ G GD G GE +G G GEAG G G G
Sbjct: 618 RGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRG 658
Score = 55.1 bits (131), Expect = 9e-08
Identities = 54/171 (31%), Positives = 67/171 (39%), Gaps = 30/171 (17%)
Query: 71 EGLNQSLIPRQIAGKGGPWKVIS------LPQALDAEF-------QDIPSEAGAAGEEEE 117
EG P+ I+GK GP + LP A A Q P G+ GE
Sbjct: 1005 EGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGS 1064
Query: 118 AGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEA-----EG-------AGEGGA--- 161
AG G G G G G G GE A GE G A +G AG G+
Sbjct: 1065 AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1124
Query: 162 -GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
GD+ + E ++ +G G+ GP G G GA G AG GE G G+
Sbjct: 1125 DGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQ 1175
Score = 54.7 bits (130), Expect = 1e-07
Identities = 39/108 (36%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAG-EGGAGDE 164
P E G AG++ GD G G G G G GEA G G AG EG G++
Sbjct: 1320 PGEPGPAGQDGVGGDKGEDGDPGQPGPPGP--SGEAGPPGPPGKRGPPGAAGAEGRQGEK 1377
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
E E G G GP G A G G G G GE G G A
Sbjct: 1378 GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAA 1425
Score = 53.5 bits (127), Expect = 3e-07
Identities = 38/103 (36%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEAT-GEGGSASEAEGAGEGGAGDELRVA 168
G GE+ E GD G G G G G G A+ G GS G GE G
Sbjct: 1204 GPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKG-----EPG 1258
Query: 169 EEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
E G AG GP GE GEAG G AG G G G+
Sbjct: 1259 EAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGD 1301
Score = 52.8 bits (125), Expect = 4e-07
Identities = 38/110 (34%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEGGSASEAEGAGEGG 160
+P AG AG E GD G G G G G G+ G G G+ A G GE G
Sbjct: 1112 LPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPG 1171
Query: 161 AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ + ++ DEGA G GP G G G GE G G+ G +G
Sbjct: 1172 PRGQQGMF--GQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMG 1219
Score = 52.8 bits (125), Expect = 4e-07
Identities = 43/108 (39%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEA----TGEGGSASEAEGAG-EGGAG 162
EAG G + G GAAGA G GE GA G+ AE TG G A G EG G
Sbjct: 1352 EAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRG 1411
Query: 163 DELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
V E+ GAAG GP G G G G+ G+ GE G G
Sbjct: 1412 IPGPVGEQGLP---GAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPG 1456
Score = 51.6 bits (122), Expect = 1e-06
Identities = 38/104 (36%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDELRVA 168
GAAG+E GD G G +G G G G GE G G+ GEG G V
Sbjct: 1000 GAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLK--GGEGPQGPPGPVG 1057
Query: 169 EEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
G AG G G G G GE GA GE G G A
Sbjct: 1058 SPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1101
Score = 51.2 bits (121), Expect = 1e-06
Identities = 37/105 (35%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG----KGEAEATGEGGSASEAEGAGEGGAGDEL 165
G G++ E GD G G G GE G G +G A G G E GE GA E
Sbjct: 1330 GVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGA--EG 1387
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ +G AG GP G G G G GAAG+ G G
Sbjct: 1388 PPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPG 1432
Score = 48.9 bits (115), Expect = 6e-06
Identities = 48/156 (30%), Positives = 63/156 (40%), Gaps = 12/156 (7%)
Query: 59 ELGARA-ALVEFAEGLNQSLIPRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEE 117
E GA+ A E G + P+ AGK GP + +P + Q +P GAAG++
Sbjct: 1376 EKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGE--QGLP---GAAGQDGP 1430
Query: 118 AGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDE 176
G G G G G+ G+ G KG G G E +G GD + +
Sbjct: 1431 PGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGE-----QGEKGDRGLPGTQGSPGAK 1485
Query: 177 GAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
G G GPAG G G G G G G+ G A
Sbjct: 1486 GDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPA 1521
Score = 48.5 bits (114), Expect = 8e-06
Identities = 35/106 (33%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDELR 166
E G G++ G G GA G G G +G +G GE G + G G
Sbjct: 1169 EPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPP---- 1224
Query: 167 VAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+ GA G GP G +VG G GE G AG G GEA
Sbjct: 1225 -GPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEA 1269
Score = 48.1 bits (113), Expect = 1e-05
Identities = 36/107 (33%), Positives = 41/107 (38%), Gaps = 2/107 (1%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASE-AEGAGEGGAGD 163
P G G+ E G G G G IG G G KG G GS E E G GD
Sbjct: 732 PGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGD 791
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ G G+ GP G G G G +G AGE G +G
Sbjct: 792 MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLG 838
Score = 47.4 bits (111), Expect = 2e-05
Identities = 36/116 (31%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 109 AGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGA------ 161
AG G + G G G+ GA G TG G KG + G G E G G
Sbjct: 873 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGP 932
Query: 162 -------GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G + + + G G TGP G VG G GE G GE G G
Sbjct: 933 KGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPG 988
Score = 47.0 bits (110), Expect = 2e-05
Identities = 42/141 (29%), Positives = 55/141 (39%), Gaps = 10/141 (7%)
Query: 79 PRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG- 137
PR + G+ GP ++ A Q P AG G G+ G G G G+ G G
Sbjct: 641 PRGLPGEAGPRGLLGPRGTPGAPGQ--PGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGP 698
Query: 138 ------KGEAEATGEGGSASEAEGAGEGGA-GDELRVAEEARESDEGAAGDTGPAGEAEA 190
+G GE G + AG GA G +E + ++GA G GP G
Sbjct: 699 QGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGY 758
Query: 191 VGEAGAVGEAGAAGEAGAVGE 211
G G G G G G+ GE
Sbjct: 759 PGPRGVKGADGVRGLKGSKGE 779
Score = 46.6 bits (109), Expect = 3e-05
Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-------KGEAEATGEGGSASEAEGAG- 157
P + G +GE+ G G G G G G G KG GE G G
Sbjct: 735 PGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGL 794
Query: 158 EGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+G G+ ++ + EG G GP G+ G+AG G+ G G G G
Sbjct: 795 KGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPG 847
Score = 44.3 bits (103), Expect = 2e-04
Identities = 34/105 (32%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEGGSASEAEGAGEGGAGDEL 165
G GE G G G G G G GK G GE G + G GG
Sbjct: 913 GPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGV---- 968
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+G G+TGP GE G G GE G G AG G
Sbjct: 969 -------VGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEG 1006
Score = 43.9 bits (102), Expect = 2e-04
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDELRVA 168
G G + G G G+ G GE G G KG+ G+ G + GE G
Sbjct: 760 GPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGP------- 812
Query: 169 EEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
E + G GD GP+G+A G+ G G G G G G
Sbjct: 813 -EGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKG 853
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETG-AVGKGEAEATGEGGSASEAEGAGEGG---- 160
P + G+ G++ E G G G G +G G A G GE G+ G + G G
Sbjct: 1134 PGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1193
Query: 161 ---AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARG 214
G + + + G G GP G G G G G G G+VG G
Sbjct: 1194 PGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGG 1250
Score = 43.5 bits (101), Expect = 3e-04
Identities = 33/108 (30%), Positives = 38/108 (35%), Gaps = 6/108 (5%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDE 164
P G +G + G G G G G G G KG G+ G GE G
Sbjct: 900 PGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ-- 957
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+ G G GP GE +GE G G G GE G G A
Sbjct: 958 ---GKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAA 1002
Score = 42.0 bits (97), Expect = 8e-04
Identities = 36/115 (31%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-------KGEAEATGEGGSASEAEGAG- 157
P G G + GD GA G G G G G KGE G G G
Sbjct: 1170 PGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGP 1229
Query: 158 EGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+G G + G G+ G GEA G G G G GE G GEA
Sbjct: 1230 QGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEA 1284
Score = 40.0 bits (92), Expect = 0.003
Identities = 39/135 (28%), Positives = 49/135 (36%), Gaps = 29/135 (21%)
Query: 77 LIPRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAV 136
++P + G G IS A +A+ Q I +A A G G G G G V
Sbjct: 494 MLPFRYGGDGSKGPTIS---AQEAQAQAILQQARIALR-------GPPGPMGLTGRPGPV 543
Query: 137 GKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGA 196
G G G S ++ E G G G G GP G+ G GA
Sbjct: 544 G-------GPGSSGAKGESGDPGPQGPR------------GVQGPPGPTGKPGKRGRPGA 584
Query: 197 VGEAGAAGEAGAVGE 211
G G GE GA G+
Sbjct: 585 DGGRGMPGEPGAKGD 599
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 63.5 bits (153), Expect = 3e-10
Identities = 43/107 (40%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGA-GDE 164
P E G GE+ EAGD G G GA GE G G GE G G+ GE G GD+
Sbjct: 397 PGEPGPPGEKGEAGDEGNPGPDGAPGERG--GPGERGPRGTPGTRGPRGDPGEAGPQGDQ 454
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
R D G AG GP G G G+ G GA G AG G+
Sbjct: 455 GREGPVGVPGDPGEAGPIGPKGYRGDEGPPGSEGARGAPGPAGPPGD 501
Score = 57.4 bits (137), Expect = 2e-08
Identities = 39/110 (35%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEGGSASEAEGAGEGG- 160
P G G GD GA G G GE GA G+ G + +G+ G E GE G
Sbjct: 349 PGFDGIQGPPGPKGDPGAFGLKGEKGEPGADGEAGRPGSSGPSGDEGQPGEPGPPGEKGE 408
Query: 161 AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
AGDE + + G G+ GP G G G GEAG G+ G G
Sbjct: 409 AGDEGNPGPDGAPGERGGPGERGPRGTPGTRGPRGDPGEAGPQGDQGREG 458
Score = 56.6 bits (135), Expect = 3e-08
Identities = 43/116 (37%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG----KGEAEATGEGGSASEAEGAGEGGAGDEL 165
G G + E G G G G+ G G G KG+ A G G E GE G
Sbjct: 329 GVDGVKGEMGYPGLPGCKGSPGFDGIQGPPGPKGDPGAFGLKGEKGEPGADGEAG----- 383
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE--ARGTNVTR 219
R DEG G+ GP GE G+ G G GA GE G GE RGT TR
Sbjct: 384 RPGSSGPSGDEGQPGEPGPPGEKGEAGDEGNPGPDGAPGERGGPGERGPRGTPGTR 439
Score = 54.3 bits (129), Expect = 2e-07
Identities = 39/112 (34%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Query: 102 FQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAG-EGG 160
+ +P G+ G + G G G GA G G KGE A GE G + +G EG
Sbjct: 339 YPGLPGCKGSPGFDGIQGPPGPKGDPGAFGLKGE--KGEPGADGEAGRPGSSGPSGDEGQ 396
Query: 161 AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
G+ E+ DEG G G GE GE G G G G G GEA
Sbjct: 397 PGEPGPPGEKGEAGDEGNPGPDGAPGERGGPGERGPRGTPGTRGPRGDPGEA 448
Score = 53.9 bits (128), Expect = 2e-07
Identities = 35/103 (33%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDELRV 167
E GA GE G G +G G GE G G+ + EA EG + GG G+
Sbjct: 375 EPGADGEAGRPGSSGPSGDEGQPGEPGPPGE-KGEAGDEGNPGPDGAPGERGGPGERGPR 433
Query: 168 AEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G G+ GP G+ G G VG G GEAG +G
Sbjct: 434 GTPGTRGPRGDPGEAGPQGDQ---GREGPVGVPGDPGEAGPIG 473
Score = 53.5 bits (127), Expect = 3e-07
Identities = 36/107 (33%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGGAGDE 164
P G GE+ E G G AG G+ G +G G+ GE GE G A + EG G +
Sbjct: 364 PGAFGLKGEKGEPGADGEAGRPGSSGPSGDEGQPGEPGPPGEKGEAGD-----EGNPGPD 418
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
E + G G G G GEAG G+ G G G G+
Sbjct: 419 GAPGERGGPGERGPRGTPGTRGPRGDPGEAGPQGDQGREGPVGVPGD 465
Score = 52.8 bits (125), Expect = 4e-07
Identities = 42/127 (33%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 99 DAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGE 158
D F+ + G GE+ EAGD G G G +G G KGE + GE GS GE
Sbjct: 264 DPGFEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGM--KGEKGSRGEKGSRGPKGYKGE 321
Query: 159 -------------GGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGE 205
G G + +G G GP G+ A G G GE GA GE
Sbjct: 322 KGKRGIDGVDGVKGEMGYPGLPGCKGSPGFDGIQGPPGPKGDPGAFGLKGEKGEPGADGE 381
Query: 206 AGAVGEA 212
AG G +
Sbjct: 382 AGRPGSS 388
Score = 40.4 bits (93), Expect = 0.002
Identities = 33/116 (28%), Positives = 41/116 (35%), Gaps = 11/116 (9%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-------GEAEATGEGGSASEAEGAGE 158
P EAG G + GD G G+ GA G G G GE G G+ +E
Sbjct: 466 PGEAGPIGPKGYRGDEGPPGSEGARGAPGPAGPPGDPGLMGERGEDGPAGNGTEGFPGFP 525
Query: 159 GGAGDELRVAEEARESDEGAAGDTGPAGEA----EAVGEAGAVGEAGAAGEAGAVG 210
G G+ + G GD G AG+ + G G G G G G
Sbjct: 526 GYPGNRGAPGINGTKGYPGLKGDEGEAGDPGDDNNDIAPRGVKGAKGYRGPEGPQG 581
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 62.0 bits (149), Expect = 7e-10
Identities = 47/130 (36%), Positives = 52/130 (40%), Gaps = 8/130 (6%)
Query: 83 AGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEA 141
AG GP P Q +P E G G GD G G GA G G G +G
Sbjct: 710 AGPPGPPGAAGTPG-----LQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPT 764
Query: 142 EATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAG 201
G G A + GEGGA +A G G+TGP G A G G GE G
Sbjct: 765 GPIGPPGPAGQPGDKGEGGAPGLPGIA--GPRGSPGERGETGPPGPAGFPGAPGQNGEPG 822
Query: 202 AAGEAGAVGE 211
GE GA GE
Sbjct: 823 GKGERGAPGE 832
Score = 59.7 bits (143), Expect = 4e-09
Identities = 43/115 (37%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSA-------SEAEGAG 157
P GA G AG GA G G GE G G KGE GE G A ++ E
Sbjct: 407 PGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGK 466
Query: 158 EGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+G G+ + GA G GPAG GE G GE GA G AG G A
Sbjct: 467 DGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAA 521
Score = 58.5 bits (140), Expect = 8e-09
Identities = 42/109 (38%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 103 QDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAG 162
Q +P AG AGE G+ G+ G G G G GKG+ GE GS A GA G G
Sbjct: 998 QGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPG--GKGDR---GENGSPG-APGA-PGHPG 1050
Query: 163 DELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
V + D G +G GPAG G GA G G G+ G GE
Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGE 1099
Score = 58.5 bits (140), Expect = 8e-09
Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 109 AGAAGEEEEAGDGGAAGAAGAIGETGAVG----KGEAEATGEGGSASEAEGAGEGGAGDE 164
AG +G+ E+G G AGA G G GA G +G+ TGE G+A G G+
Sbjct: 1058 AGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIK--GHRGFPGNP 1115
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+GA G GPAG VG +G G+ G +G G +G
Sbjct: 1116 GAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIG 1161
Score = 57.0 bits (136), Expect = 2e-08
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGGAGDE 164
P G AG+ + G+ G AG AGA G G+ G G G+ G E AG G
Sbjct: 1052 PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKG---- 1107
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
+ GA G GPAG+ A+G G G G G +G G+
Sbjct: 1108 ----HRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGK 1150
Score = 56.2 bits (134), Expect = 4e-08
Identities = 39/109 (35%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGK-------GEAEATGEGGSASEAEGAGEGGA- 161
G AG+ + G+GGA G G G G+ G+ G A G G E G GE GA
Sbjct: 771 GPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAP 830
Query: 162 GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G++ G +G GP G GE G+ G GAAG GA G
Sbjct: 831 GEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARG 879
Score = 55.5 bits (132), Expect = 7e-08
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 8/116 (6%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGE----GGSASEAEGA 156
+P G+ G + G+ G GA G GE G G G A GE G S+
Sbjct: 964 MPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPG 1023
Query: 157 GEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+G G + E GA G GP G G++G GE+G AG AGA G A
Sbjct: 1024 RDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPA 1079
Score = 54.7 bits (130), Expect = 1e-07
Identities = 42/110 (38%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEGGSASEAEGAG-EGG 160
P + GA GE G+ G AG G G G GK GE A G G+A E G G
Sbjct: 434 PGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGP 493
Query: 161 AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
AG G G+ GPAGE A G AG G AG G G G
Sbjct: 494 AGPN------------GIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPG 531
Score = 54.7 bits (130), Expect = 1e-07
Identities = 40/117 (34%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 95 PQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEA 153
PQ + E P G +GE G G G AG GE G G G G GS
Sbjct: 973 PQGVKGE-SGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPG-- 1029
Query: 154 EGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G+G G+ G G GPAG++ GE+G G AGA G AG+ G
Sbjct: 1030 ---GKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRG 1083
Score = 53.5 bits (127), Expect = 3e-07
Identities = 38/112 (33%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGA------- 161
GA G+ E G G G G G+ G G +G TG GG + G G
Sbjct: 588 GAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTG 647
Query: 162 ---GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G+ + E + D GA G G G+A A GE G G AGA G G G
Sbjct: 648 GPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAG 699
Score = 53.5 bits (127), Expect = 3e-07
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGGAGD 163
+P G+ G + + G+ G+ GA GA G G G G A +G+ G + A AG G
Sbjct: 1021 LPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPA- 1079
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAV---------GEAGAVGEAGAAGEAGAVG 210
+G GD G GE A G GA G G AG+ GA+G
Sbjct: 1080 ----GSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIG 1131
Score = 52.4 bits (124), Expect = 6e-07
Identities = 38/110 (34%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG----KGEAEATGEGGSASEAEGAGEGGA 161
P G G+ E G G G G G+ G G +G G GG E GE G
Sbjct: 602 PGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGP 661
Query: 162 -GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
GD + D GA G+ GP G A A G G G G G GA G
Sbjct: 662 KGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAG 711
Score = 52.4 bits (124), Expect = 6e-07
Identities = 39/108 (36%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGE-GGAGD 163
P G AG G GAAG G G G G +G G GS GE GG G
Sbjct: 692 PGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGA 751
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
+ ++ G G GPAG+ GE GA G G AG G+ GE
Sbjct: 752 DGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGE 799
Score = 52.0 bits (123), Expect = 8e-07
Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG----KGEAEATGEGGSASEAEGAGEGGAGDEL 165
G G + E+G G G +G G+ G +G KG A G+ G E G GG G +
Sbjct: 552 GPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNG-----ERGGPGGPGPQG 606
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
+ +G G TGP G+ G G G G G G GE
Sbjct: 607 PPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGE 652
Score = 52.0 bits (123), Expect = 8e-07
Identities = 38/111 (34%), Positives = 44/111 (39%), Gaps = 5/111 (4%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGGA--- 161
P G G E G+GG G AG G +G G G GE GS AG GA
Sbjct: 821 PGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGL 880
Query: 162 -GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
G G+ G GP G A G G+ G +G G+AG GE
Sbjct: 881 PGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGE 931
Score = 50.8 bits (120), Expect = 2e-06
Identities = 44/131 (33%), Positives = 53/131 (40%), Gaps = 18/131 (13%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAG------- 157
P G GE +AG G G GAIG +G GK GE+ G G G
Sbjct: 197 PGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGI 256
Query: 158 ------EGGAGDELRVAEEARESDEGAAGDTGPAGEAEA---VGEAGAVGEAGAAGEAGA 208
+G G + R E+ G G+ G GE A +G GA GE G G GA
Sbjct: 257 PGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGA 316
Query: 209 VGEARGTNVTR 219
G ARG + R
Sbjct: 317 AG-ARGNDGAR 326
Score = 50.8 bits (120), Expect = 2e-06
Identities = 45/152 (29%), Positives = 56/152 (36%), Gaps = 21/152 (13%)
Query: 84 GKGGPWKVISLPQALDAEFQD-IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEA 141
G+ G + +P A + +D P E GA G AG+ GA G G G G G KG A
Sbjct: 447 GERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPA 506
Query: 142 EATGEGGSASEAEGAGE-------------------GGAGDELRVAEEARESDEGAAGDT 182
G G A AGE GG G + + + + G G
Sbjct: 507 GERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPP 566
Query: 183 GPAGEAEAVGEAGAVGEAGAAGEAGAVGEARG 214
GP+G G G G G G G GE G
Sbjct: 567 GPSGPRGQPGVMGFPGPKGNDGAPGKNGERGG 598
Score = 50.8 bits (120), Expect = 2e-06
Identities = 35/110 (31%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDE 164
IP E G AGE G G GAAG G G G G G G G G
Sbjct: 499 IPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPG-------GPGMRGMPGSPGGPGSDGKP 551
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARG 214
+ G G +GP G+ +G G G GA G+ G G G
Sbjct: 552 GPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGG 601
Score = 50.4 bits (119), Expect = 2e-06
Identities = 37/105 (35%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAG-EGGAGDEL 165
E GA G + E G G GA G +G GA G +G G G+ G +G G
Sbjct: 277 ETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPG 336
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
GA G+ GPAG + G G GE G G AGA G
Sbjct: 337 PPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQG 381
Score = 49.7 bits (117), Expect = 4e-06
Identities = 40/125 (32%), Positives = 49/125 (39%), Gaps = 20/125 (16%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVG----KGEAEATGEGGSASEAEGAG------ 157
E GA GE+ E G G AG G G G G KGE + G G+A G
Sbjct: 826 ERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPG 885
Query: 158 -EGGAGDELRVAEEARESDEGAAGDT---------GPAGEAEAVGEAGAVGEAGAAGEAG 207
G G ++ G AG+T GP G+A GE G+ G G G G
Sbjct: 886 SNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPG 945
Query: 208 AVGEA 212
+G A
Sbjct: 946 PLGIA 950
Score = 48.9 bits (115), Expect = 6e-06
Identities = 41/124 (33%), Positives = 46/124 (37%), Gaps = 17/124 (13%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATG-EGGSASEAEGAGEGG 160
P E G GE GD GA GA G G+ GA G+ G A A G GG+ G+G
Sbjct: 650 PGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGA 709
Query: 161 AGD------------ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGA 208
AG + E G GD G G A G G G G G G
Sbjct: 710 AGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGP 769
Query: 209 VGEA 212
G A
Sbjct: 770 PGPA 773
Score = 48.1 bits (113), Expect = 1e-05
Identities = 37/113 (32%), Positives = 42/113 (37%), Gaps = 8/113 (7%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG----KGEAEATG----EGGSASEAEGAG 157
P GA G AG G +G G GE G G KG A G +G +
Sbjct: 215 PGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGE 274
Query: 158 EGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+G G E + GA G GP G G G G AGA G GA G
Sbjct: 275 KGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
Score = 48.1 bits (113), Expect = 1e-05
Identities = 42/141 (29%), Positives = 51/141 (36%), Gaps = 16/141 (11%)
Query: 84 GKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----- 138
G+GGP V P P G GE G GAAG GA G G G
Sbjct: 834 GEGGPPGVAGPPGGSGPAGP--PGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPG 891
Query: 139 --GEAEATGEGGSASEAEGAGEGGA-------GDELRVAEEARESDEGAAGDTGPAGEAE 189
G + + G+ G A G G+ GD + E+ +G G GP G A
Sbjct: 892 PPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAG 951
Query: 190 AVGEAGAVGEAGAAGEAGAVG 210
G G G G G G+ G
Sbjct: 952 ITGARGLAGPPGMPGPRGSPG 972
Score = 47.4 bits (111), Expect = 2e-05
Identities = 37/109 (33%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Query: 103 QDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGE-GGA 161
Q P G G++ + G G G G G G GE GE G +A G GG
Sbjct: 617 QGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGP--PGENGKPGEPGPKGDAGAPGAPGGK 674
Query: 162 GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
GD E GA G G AG G GA G G G AG G
Sbjct: 675 GDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPG 723
Score = 45.8 bits (107), Expect = 5e-05
Identities = 37/110 (33%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDE 164
P G +G + G G AG GA G G G KG+A GE GS G GA
Sbjct: 890 PGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPG---AQGPPGAPGP 946
Query: 165 LRVA----EEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
L +A G G G G GE+G G G +GE G G
Sbjct: 947 LGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPG 996
Score = 40.4 bits (93), Expect = 0.002
Identities = 33/103 (32%), Positives = 37/103 (35%), Gaps = 16/103 (15%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDELRVAE 169
G AG AG G G G G G+ G + G G E AG G
Sbjct: 168 GLAGYPGPAGPPGPPGPPGTSGHPGSPG-----SPGYQGPPGEPGQAGPSGP-------- 214
Query: 170 EARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
GA G +GPAG+ G G GE G G G G A
Sbjct: 215 ---PGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPA 254
Score = 38.5 bits (88), Expect = 0.009
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 121 GGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAG 180
GG AG G G G G +G GS G G + G AG
Sbjct: 167 GGLAGYPGPAGPPGP--PGPPGTSGHPGSPGSPGYQGPPG--------------EPGQAG 210
Query: 181 DTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
+GP G A+G +G G+ G +G G GE
Sbjct: 211 PSGPPGPPGAIGPSGPAGKDGESGRPGRPGE 241
Score = 28.9 bits (63), Expect = 6.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 173 ESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ +G GD GP G G+ G G+ G+ G G G
Sbjct: 102 QGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPG 139
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 62.0 bits (149), Expect = 7e-10
Identities = 43/117 (36%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 102 FQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGG- 160
FQ +P G GE + GD G G GA+G G +GE GE G GE G
Sbjct: 676 FQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGP--RGERGNPGERGEPGITGLPGEKGM 733
Query: 161 AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE--ARGT 215
AG + G GDTGP G GE G G G G+ G +GE A GT
Sbjct: 734 AGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGT 790
Score = 59.3 bits (142), Expect = 5e-09
Identities = 41/116 (35%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGA--- 161
P E G G++ GD GA G G GE G G +GE TG G A G G G
Sbjct: 686 PGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGS 745
Query: 162 -------GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
GD + + G AG GP G+ +GE GA G AG G G G
Sbjct: 746 PGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPG 801
Score = 58.9 bits (141), Expect = 6e-09
Identities = 39/104 (37%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAG-EGGAGDELRV 167
G GE G G AG G +G TGA G KG G GS G EG AG++
Sbjct: 999 GQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTP 1058
Query: 168 AEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
+ + G GD GPAG + G G G GA G+AG G+
Sbjct: 1059 GRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGD 1102
Score = 55.5 bits (132), Expect = 7e-08
Identities = 44/138 (31%), Positives = 55/138 (39%), Gaps = 6/138 (4%)
Query: 79 PRQIAGKGGPWKVISLPQALDAEFQDIPSEA----GAAGEEEEAGDGGAAGAAGAIGETG 134
P+ +AG GP +P P A G+AG G GA G AG +GE G
Sbjct: 877 PQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPG 936
Query: 135 AVGK-GEAEATGEGGSASEAEGAGE-GGAGDELRVAEEARESDEGAAGDTGPAGEAEAVG 192
G G G G + AG GG GD+ E+ + +G G G G+ VG
Sbjct: 937 KEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVG 996
Query: 193 EAGAVGEAGAAGEAGAVG 210
G GE G G G G
Sbjct: 997 MPGQRGERGMPGLPGPAG 1014
Score = 55.1 bits (131), Expect = 9e-08
Identities = 45/141 (31%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 84 GKGGPWKVISL--PQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG---- 137
G+ GP + PQ D + + E G G++ +AG G G AG+ G G G
Sbjct: 837 GENGPTGAVGFAGPQGPDGQ-PGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGL 895
Query: 138 ------KGEAEATGEGGSASEAEGAGEGGA-GDELRVAEEARESDEGAAGDTGPAGEAEA 190
+G ATG GSA G GA G + E +E G GD G G
Sbjct: 896 KGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGR--- 952
Query: 191 VGEAGAVGEAGAAGEAGAVGE 211
VG+ G G G G+ G GE
Sbjct: 953 VGDRGPAGPPGGPGDKGDPGE 973
Score = 53.9 bits (128), Expect = 2e-07
Identities = 39/110 (35%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG----KGEAEATGEGGSASEAEGAGEGG 160
+P E G AG G G+ G +G G+TG G GE G G + G GE G
Sbjct: 727 LPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKG 786
Query: 161 AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
A E ++GA G GP G G AG GE G G G VG
Sbjct: 787 A--------EGTAGNDGARGLPGPLGPP---GPAGPTGEKGEPGPRGLVG 825
Score = 53.1 bits (126), Expect = 3e-07
Identities = 43/139 (30%), Positives = 52/139 (37%), Gaps = 13/139 (9%)
Query: 84 GKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG----KG 139
G GP LP A+ + P G G +G G+AG G+ G G+ G +G
Sbjct: 408 GPPGPVGSPGLPGAIGTD--GTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRG 465
Query: 140 EAEATGEGGSASEAEGAGEGGA-------GDELRVAEEARESDEGAAGDTGPAGEAEAVG 192
+ G G EA GE G G + D G G GP GE A G
Sbjct: 466 QPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPG 525
Query: 193 EAGAVGEAGAAGEAGAVGE 211
G G G G GA GE
Sbjct: 526 NRGFPGSDGLPGPKGAQGE 544
Score = 51.6 bits (122), Expect = 1e-06
Identities = 40/104 (38%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 109 AGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGGA-GDELR 166
AG G E GD G G G+ G G GK GE G G+ E AG GA G
Sbjct: 233 AGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGA 292
Query: 167 VAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ G G GP GE VG G+ GEAG G GA+G
Sbjct: 293 PGLPGLKGHRGHKGLEGPKGE---VGAPGSKGEAGPTGPMGAMG 333
Score = 50.8 bits (120), Expect = 2e-06
Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGD 163
+P G G++ + GD G G G G TG G G GE GSA G G
Sbjct: 1120 LPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPG 1179
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
V +E + G G GP G +VGEAG G G G G G
Sbjct: 1180 P--VGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPG 1224
Score = 49.7 bits (117), Expect = 4e-06
Identities = 38/116 (32%), Positives = 42/116 (36%), Gaps = 8/116 (6%)
Query: 103 QDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGA 161
Q +P E G AG GD G G GA G G G +G G G A GE G
Sbjct: 761 QGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGP 820
Query: 162 -------GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G GA G GP G G G GE G G+AG+ G
Sbjct: 821 RGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPG 876
Score = 49.3 bits (116), Expect = 5e-06
Identities = 34/107 (31%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGD 163
+P E G G + G GA G G G G +G G + G G EA G G
Sbjct: 340 MPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGP-- 397
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
E +G G+TGP G + G GA+G G G G G
Sbjct: 398 ---------EGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTG 435
Score = 49.3 bits (116), Expect = 5e-06
Identities = 39/120 (32%), Positives = 44/120 (36%), Gaps = 14/120 (11%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGA--- 161
P G G E G GA G AG G G G KGE G+ G A G G+
Sbjct: 827 PGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGP 886
Query: 162 ----------GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
G G+AG GP G A A G AG +GE G G G G+
Sbjct: 887 HGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGD 946
Score = 49.3 bits (116), Expect = 5e-06
Identities = 36/110 (32%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG----KGEAEATGEGGSASEAEGAGEGG- 160
P GA GE + GD G AG G+ G G G G+A G+ GS G G
Sbjct: 1058 PGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGK 1117
Query: 161 AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G + D G GD G G G G G G GE G+ G
Sbjct: 1118 RGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAG 1167
Score = 48.9 bits (115), Expect = 6e-06
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGGA-GD 163
P + G G + EAG G G G G G G+ G+ G+ G+ GE GA G+
Sbjct: 467 PGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGN 526
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARG 214
+ +GA G+ GP G + G G+ G+ G GE G G ARG
Sbjct: 527 RGFPGSDGLPGPKGAQGERGPVGSS---GPKGSQGDPGRPGEPGLPG-ARG 573
Score = 48.1 bits (113), Expect = 1e-05
Identities = 43/135 (31%), Positives = 49/135 (36%), Gaps = 27/135 (20%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG----------------KGEAEATGEGGS 149
P E G G G+ G AG+ GA G GA G KGE A G G
Sbjct: 263 PGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGE 322
Query: 150 ASEAEGAG-------EGGAGDELRVAEEARESDEGA---AGDTGPAGEAEAVGEAGAVGE 199
A G G G+ R+ + GA G GP G G +G G
Sbjct: 323 AGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGN 382
Query: 200 AGAAGEAGAVGEARG 214
G GEAG G ARG
Sbjct: 383 PGMKGEAGPTG-ARG 396
Score = 48.1 bits (113), Expect = 1e-05
Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGA------- 161
GA GE+ G G+ G G G G G KG + G+ G A A G+ GA
Sbjct: 591 GAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEV 650
Query: 162 GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
G V + G G GP G G G GE G G+ G G+
Sbjct: 651 GPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGD 700
Score = 45.4 bits (106), Expect = 7e-05
Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAG----EGG 160
P E G G G+ G G G +G GA G+ G G G + G +G
Sbjct: 563 PGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGS 622
Query: 161 AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
+GD G AG+ G G+ A G+ G VG +G G G GE
Sbjct: 623 SGDP---------GKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGE 664
Score = 45.1 bits (105), Expect = 9e-05
Identities = 36/127 (28%), Positives = 48/127 (37%), Gaps = 17/127 (13%)
Query: 103 QDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEGGSASEAEGAGE 158
Q P G G +AG G G+ G IG G GK G G+ G + G+
Sbjct: 1082 QGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQ 1141
Query: 159 GG----AGDELRVAEEARESDEGAAG---------DTGPAGEAEAVGEAGAVGEAGAAGE 205
G G + ++G+AG GP G + G G +G G G
Sbjct: 1142 KGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGV 1201
Query: 206 AGAVGEA 212
G+VGEA
Sbjct: 1202 RGSVGEA 1208
Score = 43.1 bits (100), Expect = 4e-04
Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAG-EGGAGD 163
IP +G G G+ G GA G G G +GE G GS G +G G
Sbjct: 373 IPGSSGFPGNPGMKGEAGPTGARGPEGPQGQ--RGETGPPGPVGSPGLPGAIGTDGTPGA 430
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+ G+AG G G + G G G+ G G G GEA
Sbjct: 431 KGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEA 479
Score = 42.4 bits (98), Expect = 6e-04
Identities = 33/108 (30%), Positives = 39/108 (36%), Gaps = 5/108 (4%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEGGSASEAEGAG-EGGAGDE 164
G+ G+ G+ G GA G G G G G A GE G G G G
Sbjct: 555 GSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSM 614
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+ D G G+ G AG G G GE G +G G G A
Sbjct: 615 GLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLA 662
Score = 39.7 bits (91), Expect = 0.004
Identities = 35/112 (31%), Positives = 43/112 (38%), Gaps = 16/112 (14%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAA-GAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDE 164
P A AG +E++G G G G++G G +G G+ G A GE G
Sbjct: 190 PFSAQMAGLDEKSGLGSQVGLMPGSVGPVGP--RGPQGLQGQQGGAGPTGPPGEPGDPGP 247
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE--ARG 214
+ G G GP G GE G G G GE G G ARG
Sbjct: 248 M-----------GPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARG 288
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 61.6 bits (148), Expect = 1e-09
Identities = 44/116 (37%), Positives = 51/116 (43%), Gaps = 11/116 (9%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK----------GEAEATGEGGSASEAEG 155
P AGA GE+ E G G AG+AGA G G G+ G A G+ G+ E
Sbjct: 794 PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGE 853
Query: 156 AGE-GGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
AG+ G AG +G G TGP G A G GA G GAAG G G
Sbjct: 854 AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPG 909
Score = 60.8 bits (146), Expect = 2e-09
Identities = 49/143 (34%), Positives = 57/143 (39%), Gaps = 26/143 (18%)
Query: 79 PRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAG---------EEEEAGDGGAAGAAGA 129
P+ +G GP P Q +P E GAAG + E G GA G G
Sbjct: 730 PKGASGPAGPPGAQGPPG-----LQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGG 784
Query: 130 IGETGAVGK-GEAEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEA 188
G TG +G G A A GE G AG GA G G+TGP G A
Sbjct: 785 RGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA-----------RGAPGERGETGPPGPA 833
Query: 189 EAVGEAGAVGEAGAAGEAGAVGE 211
G GA G+ GA GE G G+
Sbjct: 834 GFAGPPGADGQPGAKGEQGEAGQ 856
Score = 58.9 bits (141), Expect = 6e-09
Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 79 PRQIAGKGGPWKVISLP-QALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG 137
P+ +AG+ G ++ LP Q + F +P +G G++ G G G G +G G G
Sbjct: 973 PQGLAGQRG---IVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG 1029
Query: 138 K----GEAEATGEGGSASEAEGAG-EGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVG 192
G + G G AG +G G+ V G+ G GP G+ G
Sbjct: 1030 PAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRG 1089
Query: 193 EAGAVGEAGAAGEAGAVG 210
EAGA G G +G AGA G
Sbjct: 1090 EAGAQGPMGPSGPAGARG 1107
Score = 58.5 bits (140), Expect = 8e-09
Identities = 43/121 (35%), Positives = 53/121 (43%), Gaps = 20/121 (16%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVG----------------KGEAEATGEGGSAS 151
+ GA GE+ EAG G AGA G G +GA G +G ATG G+A
Sbjct: 844 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG 903
Query: 152 EAEGAGEGG-AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G G G ++ +GA GD+GP G A GE G G AG GE G G
Sbjct: 904 RVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRA---GEPGLQGPAGPPGEKGEPG 960
Query: 211 E 211
+
Sbjct: 961 D 961
Score = 57.0 bits (136), Expect = 2e-08
Identities = 41/106 (38%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDEL 165
P GA GE +AG+ G GA G G G GE A G G A A GE GA
Sbjct: 605 PGPKGANGEPGKAGEKGLPGAPGLRGLPGK--DGETGAAGPPGPAGPAGERGEQGA---- 658
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
+G G GP GE G+ G GEAGA G G GE
Sbjct: 659 ----PGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGE 700
Score = 57.0 bits (136), Expect = 2e-08
Identities = 40/110 (36%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 102 FQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGA 161
FQ +P G GE + GD G G AGA G G +GE GE GS +G
Sbjct: 664 FQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGP--RGERGFPGERGSPG-----AQGLQ 716
Query: 162 GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
G + +GA+G GP G G G GE GAAG AG G+
Sbjct: 717 GPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGD 766
Score = 56.6 bits (135), Expect = 3e-08
Identities = 42/106 (39%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGAGDEL 165
P G+ G + G GAAG G GETGAVG A G GS A G+ G E
Sbjct: 1034 PGREGSPGADGPPGRDGAAGVKGDRGETGAVGA--PGAPGPPGSPGPAGPTGKQGDRGEA 1091
Query: 166 RVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
GA G GP+G A A G G G G GEAG GE
Sbjct: 1092 -----------GAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGE 1126
Score = 55.8 bits (133), Expect = 5e-08
Identities = 43/110 (39%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGA-GDE 164
P AG GE+ G+ G AG GA G G GK A GE G GE GA G+
Sbjct: 458 PGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR--GEPGGVGPIGPPGERGAPGNR 515
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARG 214
++ +GA G+ GP+G A G GA G+ G GE G G ARG
Sbjct: 516 GFPGQDGLAGPKGAPGERGPSGLA---GPKGANGDPGRPGEPGLPG-ARG 561
Score = 55.5 bits (132), Expect = 7e-08
Identities = 40/114 (35%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGE------ 158
P E GA G G G AG GA GE G G G A G+ G E G
Sbjct: 506 PGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGR 565
Query: 159 -GGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
G AG + +V ++G G GP G G G G GA GE G GE
Sbjct: 566 PGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE 619
Score = 55.1 bits (131), Expect = 9e-08
Identities = 39/103 (37%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGE-GGAGDELRV 167
G G G G GA+G G GA G G GE G+A A G+ G G++
Sbjct: 717 GPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPE 776
Query: 168 AEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
++ G G GP G A A GE G VG G AG AGA G
Sbjct: 777 GAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARG 819
Score = 55.1 bits (131), Expect = 9e-08
Identities = 38/113 (33%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGG---- 160
P G AG + GD G AGA G +G +G G +G G G EA GE G
Sbjct: 1073 PGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGH 1132
Query: 161 ---AGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G + D+GA+G GP+G G G G+ GA G G +G
Sbjct: 1133 RGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIG 1185
Score = 53.9 bits (128), Expect = 2e-07
Identities = 41/118 (34%), Positives = 46/118 (38%), Gaps = 11/118 (9%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG----------KGEAEATGEGGSASEAE 154
IP G+AG AG G G G G GA G G A GE G E
Sbjct: 415 IPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 474
Query: 155 GAG-EGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
AG +G G + + G G GP GE A G G G+ G AG GA GE
Sbjct: 475 PAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE 532
Score = 53.1 bits (126), Expect = 3e-07
Identities = 38/124 (30%), Positives = 48/124 (38%), Gaps = 17/124 (13%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG----------KGEAEATGEGGSASEAEG 155
P AG G++ + G+ GA G G G GA G KGEA GE G
Sbjct: 1076 PGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGF 1135
Query: 156 AG-------EGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGA 208
G G +GD+ G G GP+G+ A G G +G G G +G
Sbjct: 1136 TGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGE 1195
Query: 209 VGEA 212
G A
Sbjct: 1196 TGPA 1199
Score = 52.8 bits (125), Expect = 4e-07
Identities = 39/110 (35%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGGA--- 161
P GA GE G G GA G GE G G G A A+G G+ G GA
Sbjct: 368 PGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI 427
Query: 162 -GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G +GA G GP G+ G AG GE G GE G G
Sbjct: 428 AGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAG 477
Score = 52.8 bits (125), Expect = 4e-07
Identities = 44/113 (38%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 99 DAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAG 157
DA Q +GA GE+ G G G GA G+ G +G G A GE G A E G
Sbjct: 568 DAGPQGKVGPSGAPGED---GRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPG 624
Query: 158 EGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G LR ++ + GAAG GPAG A GE GA G +G G G G
Sbjct: 625 APG----LR-GLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPG 672
Score = 52.8 bits (125), Expect = 4e-07
Identities = 41/122 (33%), Positives = 47/122 (38%), Gaps = 15/122 (12%)
Query: 109 AGAAGEEEEAGDGGAAGAAGAIGETGAVG----------KGEAEATGEGGSASEAEGAGE 158
AG GE+ E GD G +GA G G G G +GE G G + E G
Sbjct: 950 AGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGA 1009
Query: 159 GGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARGTNVT 218
GA + G G TGPAGE G GA G G G AG G+ T
Sbjct: 1010 PGAS-----GDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAV 1064
Query: 219 RA 220
A
Sbjct: 1065 GA 1066
Score = 52.0 bits (123), Expect = 8e-07
Identities = 41/116 (35%), Positives = 44/116 (37%), Gaps = 6/116 (5%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGKGEAEATGEGGSASEAEGAGEGGA-GDE 164
P G G E G G AGAAGA G G G G G A G G GA G +
Sbjct: 320 PGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPA-----GPPGPVGPAGGPGFPGAPGAK 374
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARGTNVTRA 220
EGA G G G + G AGA G G G GA G A + A
Sbjct: 375 GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGA 430
Score = 52.0 bits (123), Expect = 8e-07
Identities = 37/106 (34%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATG-EGGSASEAEGAGEGGAGDE 164
G GE G GAAGA G G+ G G G A G G ++ E G G E
Sbjct: 327 GLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPE 386
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G+ G G +G G GA G AGA G AGA G
Sbjct: 387 GAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPG 432
Score = 52.0 bits (123), Expect = 8e-07
Identities = 37/108 (34%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDE 164
P G G + G+ GAAG AG G+ G VG KG A G+ +GG G
Sbjct: 740 PGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGK-----------DGGRGLT 788
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
+ G G+ GP G A + G GA GE G G G G A
Sbjct: 789 GPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFA 836
Score = 51.2 bits (121), Expect = 1e-06
Identities = 43/121 (35%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 108 EAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGDELR 166
+ G +G E G G G GA G+ G +G G A GE G A E G G LR
Sbjct: 574 KVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPG----LR 629
Query: 167 VAEEARESDEGAAGDTGPAGEAEAVGEAGAVG---------------EAGAAGEAGAVGE 211
++ + GAAG GPAG A GE GA G E G G+ G GE
Sbjct: 630 -GLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGE 688
Query: 212 A 212
A
Sbjct: 689 A 689
Score = 51.2 bits (121), Expect = 1e-06
Identities = 36/107 (33%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGG-SASEAEGAGEGGAGD 163
P +G G + GD G G AG G G G GE G+ G S +E +G AG
Sbjct: 920 PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQ 979
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
V + + G G GP+GE G GA G+ G G G G
Sbjct: 980 RGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 1026
Score = 50.8 bits (120), Expect = 2e-06
Identities = 41/112 (36%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-------KGEAEATGEGGSASEAEGAGE 158
P AGA+G G GA G+AGA G GA G G ATG G + G
Sbjct: 401 PGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGI 460
Query: 159 GGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
G E + +G G GP G A G AG G+ GA GE G VG
Sbjct: 461 AGFKGE--------QGPKGEPGPAGPQG---APGPAGEEGKRGARGEPGGVG 501
Score = 50.4 bits (119), Expect = 2e-06
Identities = 37/111 (33%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG----KGEAEATGEGGSASEAEGAGEGGA 161
P + G AG+ +AG+ G G GA G G G KG G G+ EA G G
Sbjct: 251 PGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG- 309
Query: 162 GDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEA 212
E + G+ G GP G G G G AGA G G G A
Sbjct: 310 -------ESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPA 353
Score = 50.1 bits (118), Expect = 3e-06
Identities = 37/107 (34%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGGAGD 163
+P G G G G AGA G GE+G+ G+ G G G E G GA
Sbjct: 283 LPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGA-- 340
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
+ G AG GP G A G GA G G AG GA G
Sbjct: 341 ---AGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARG 384
Score = 46.6 bits (109), Expect = 3e-05
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 110 GAAGEEEEAGDGGAAGAAGAIGETGAVGK----GEAEATGEGG-SASEAEGAGEGGAGDE 164
GA G + G G GAAG +G G+ G G +G+ G + + G AG+
Sbjct: 885 GARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEP 944
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGE 211
++G GD GP+G G G G+ G G G GE
Sbjct: 945 GLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE 991
Score = 45.8 bits (107), Expect = 5e-05
Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Query: 105 IPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVG-KGEAEATGEGGSASEAEGAGEGGAGD 163
I G G++ EAG+ G G G G TG G G +G+ G++ A +G G
Sbjct: 1108 IQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPG 1167
Query: 164 ELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVG 210
V ++ G G GP G GE G G G G G G
Sbjct: 1168 P--VGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPG 1212
Score = 45.4 bits (106), Expect = 7e-05
Identities = 57/211 (27%), Positives = 72/211 (34%), Gaps = 34/211 (16%)
Query: 79 PRQIAGKGGPWKVISLPQALDAEFQDIPSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK 138
P+ G+ G K I P+ Q E G G+ + G+ GA G G GE G G
Sbjct: 102 PKGQKGEPGDIKDIVGPKGPPGP-QGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGN 160
Query: 139 -------GEAEATGEGGS--ASEAEGAGEGGAGDELRVAE-------------------- 169
G G GG+ A A G E G +L V +
Sbjct: 161 PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGP 220
Query: 170 ---EARESDEGAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARGTNVTRAWVQPRR 226
+ + G G +GP G G G G+ G AG+ G GE A P
Sbjct: 221 QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGT 280
Query: 227 CTLQAVLENRAYQELRPFSGRE-QPGCKEES 256
L V +R Y L G PG K ES
Sbjct: 281 PGLPGVKGHRGYPGLDGAKGEAGAPGVKGES 311
Score = 43.1 bits (100), Expect = 4e-04
Identities = 37/110 (33%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 106 PSEAGAAGEEEEAGDGGAAGAAGAIGETGAVGK-GEAEATGEGGSASEAEGAGEGGAGDE 164
P AGA G + G+ G G G G G G G G+ G A + AGE G
Sbjct: 212 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPP-- 269
Query: 165 LRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEAGA---AGEAGAVGE 211
+ G G G G G GA GEAGA GE+G+ GE
Sbjct: 270 ---GPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGE 316
Score = 35.8 bits (81), Expect = 0.056
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 141 AEATGEGGSASEAEGAGEGGAGDELRVAEEARESDEGAAGDTGPAGEAEAVGEAGAVGEA 200
A A+G+ G + GE G ++ V + +G AG+ GP G+ GE GA G
Sbjct: 94 ATASGQPGPKGQK---GEPGDIKDI-VGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPR 149
Query: 201 GAAGEAGAVG 210
G GE G G
Sbjct: 150 GRDGEPGTPG 159
Score = 32.0 bits (71), Expect = 0.82
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 123 AAGAAGAIGETGAVGK-----GEAEATGEGGSASEAEGAGE-GGAGDELRVAEEARESDE 176
A+G G G+ G G G G G A E G+ G G++ R+ +
Sbjct: 96 ASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEP 155
Query: 177 GAAGDTGPAGEAEAVGEAGAVGEAGAAGEAGAVGEARG 214
G G+ GP G G G +G AA AG E G
Sbjct: 156 GTPGNPGPPGPPGPPGPPG-LGGNFAAQMAGGFDEKAG 192
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,823,173
Number of Sequences: 37866
Number of extensions: 705987
Number of successful extensions: 12115
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 484
Number of HSP's that attempted gapping in prelim test: 4101
Number of HSP's gapped (non-prelim): 4131
length of query: 340
length of database: 18,247,518
effective HSP length: 103
effective length of query: 237
effective length of database: 14,347,320
effective search space: 3400314840
effective search space used: 3400314840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.