Guide to the Human Genome
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Name: LOC100287500 Sequence: fasta or formatted (399aa) NCBI GI: 239746974
Description:

PREDICTED: hypothetical protein XP_002343900

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         47           2
 C cysteine            1.8          7           1
 D aspartate           3.3         13           2
 E glutamate          11.0         44           2
 F phenylalanine       3.0         12           1
 G glycine             9.0         36           2
 H histidine           1.5          6           1
 I isoleucine          1.3          5           1
 K lysine              1.8          7           1
 L leucine            12.3         49           2
 M methionine          2.5         10           1
 N asparagine          1.8          7           1
 P proline             4.3         17           1
 Q glutamine           6.0         24           3
 R arginine            9.8         39           4
 S serine              4.5         18           1
 T threonine           3.5         14           2
 V valine              8.5         34           2
 W tryptophan          2.0          8           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343900 
PNMA6A                1.000   paraneoplastic antigen like 6A 
LOC100287466          0.990   PREDICTED: hypothetical protein XP_002343899 
LOC100287428          0.990   PREDICTED: hypothetical protein XP_002343898 
PNMA3                 0.358   paraneoplastic cancer-testis-brain antigen 
LOC649201             0.339   PREDICTED: similar to paraneoplastic antigen MA1 [H...
LOC649201             0.339   PREDICTED: similar to paraneoplastic antigen MA1 [H...
LOC649201             0.339   PREDICTED: similar to paraneoplastic antigen MA1 [H...
PNMA5                 0.329   paraneoplastic antigen like 5 
PNMA5                 0.329   paraneoplastic antigen like 5 
PNMA5                 0.329   paraneoplastic antigen like 5 
LOC649238             0.324   PREDICTED: similar to hCG1645335 
LOC649238             0.324   PREDICTED: similar to hCG1645335 
PNMA1                 0.311   paraneoplastic antigen MA1 
PNMA2                 0.309   paraneoplastic antigen MA2 
MOAP1                 0.295   modulator of apoptosis 1 
ZCCHC18               0.146   zinc finger, CCHC domain containing 18 
ZCCHC12               0.145   zinc finger, CCHC domain containing 12 
LOC100128960          0.127   PREDICTED: similar to paraneoplastic antigen MA2 [H...
LOC100128960          0.127   PREDICTED: similar to Putative paraneoplastic antig...
PNMAL1                0.111   PNMA-like 1 isoform b 
PNMAL1                0.111   PNMA-like 1 isoform a 
PNMAL2                0.081   PNMA-like 2 
CCDC8                 0.023   coiled-coil domain containing 8 
TBCC                  0.020   beta-tubulin cofactor C 
MYH14                 0.014   myosin, heavy chain 14 isoform 1 
MYH14                 0.014   myosin, heavy chain 14 isoform 2 
MYH14                 0.014   myosin, heavy chain 14 isoform 3 
LOC100289978          0.013   PREDICTED: hypothetical protein XP_002348035 
CROCC                 0.013   ciliary rootlet coiled-coil 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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