Guide to the Human Genome
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Name: LOC100128328 Sequence: fasta or formatted (225aa) NCBI GI: 169216359
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {225aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         31           3
 C cysteine            3.6          8           1
 D aspartate           1.3          3           1
 E glutamate           3.1          7           1
 F phenylalanine       2.7          6           1
 G glycine            14.7         33           4
 H histidine           1.3          3           1
 I isoleucine          0.9          2           1
 K lysine              0.0          0           0
 L leucine             9.3         21           4
 M methionine          1.8          4           1
 N asparagine          0.9          2           1
 P proline            15.6         35           4
 Q glutamine           1.8          4           1
 R arginine           11.1         25           2
 S serine              9.3         21           2
 T threonine           2.2          5           1
 V valine              2.2          5           1
 W tryptophan          2.7          6           1
 Y tyrosine            1.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128328          1.000   PREDICTED: hypothetical protein 
CASKIN1               0.048   CASK interacting protein 1 
ZNF628                0.046   zinc finger protein 628 
LOC100290265          0.046   PREDICTED: hypothetical protein XP_002346787 
COL3A1                0.044   collagen type III alpha 1 preproprotein 
SYNPO2L               0.044   synaptopodin 2-like isoform a 
SYNPO2L               0.044   synaptopodin 2-like isoform b 
TRIP6                 0.041   thyroid receptor-interacting protein 6 
TAF4                  0.041   TBP-associated factor 4 
RANBP9                0.039   RAN binding protein 9 
INF2                  0.039   inverted formin 2 isoform 2 
INF2                  0.039   inverted formin 2 isoform 1 
ZNF828                0.037   zinc finger protein 828 
COL22A1               0.037   collagen, type XXII, alpha 1 
LOC389333             0.037   hypothetical protein LOC389333 
WIPF3                 0.037   WAS/WASL interacting protein family, member 3 [Homo...
PDCD7                 0.037   programmed cell death 7 
COL12A1               0.035   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.035   collagen, type XII, alpha 1 long isoform precursor [...
SYVN1                 0.035   synoviolin 1 isoform b 
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
LOC100293662          0.035   PREDICTED: hypothetical protein 
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.035   PREDICTED: hypothetical protein LOC80164 
HCN2                  0.033   hyperpolarization activated cyclic nucleotide-gated...
SYVN1                 0.033   synoviolin 1 isoform a 
LOC100289444          0.033   PREDICTED: hypothetical protein 
LOC100289444          0.033   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.033   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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