Guide to the Human Genome
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Name: SYVN1 Sequence: fasta or formatted (617aa) NCBI GI: 27436927
Description:

synoviolin 1 isoform b

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [616aa] synoviolin 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         69           3
 C cysteine            1.5          9           1
 D aspartate           2.4         15           2
 E glutamate           5.3         33           2
 F phenylalanine       6.2         38           2
 G glycine             4.7         29           1
 H histidine           2.6         16           1
 I isoleucine          3.2         20           2
 K lysine              2.1         13           2
 L leucine            10.4         64           3
 M methionine          4.7         29           2
 N asparagine          1.8         11           1
 P proline            12.6         78           4
 Q glutamine           3.1         19           2
 R arginine            5.0         31           4
 S serine              6.8         42           2
 T threonine           6.8         42           3
 V valine              6.0         37           2
 W tryptophan          1.1          7           1
 Y tyrosine            2.4         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synoviolin 1 isoform b 
SYVN1                 0.995   synoviolin 1 isoform a 
AMFR                  0.079   autocrine motility factor receptor 
DIAPH1                0.049   diaphanous 1 isoform 2 
DIAPH1                0.049   diaphanous 1 isoform 1 
SF1                   0.046   splicing factor 1 isoform 2 
SF1                   0.046   splicing factor 1 isoform 1 
PRR12                 0.045   proline rich 12 
FMN2                  0.042   formin 2 
SF3B4                 0.042   splicing factor 3b, subunit 4 
SFPQ                  0.041   splicing factor proline/glutamine rich (polypyrimidin...
TAF4                  0.041   TBP-associated factor 4 
RNF139                0.039   ring finger protein 139 
WASL                  0.038   Wiskott-Aldrich syndrome gene-like protein 
PRB2                  0.038   proline-rich protein BstNI subfamily 2 
PRB1                  0.038   proline-rich protein BstNI subfamily 1 isoform 1 pre...
SF3A2                 0.038   splicing factor 3a, subunit 2 
YLPM1                 0.036   YLP motif containing 1 
PTPN23                0.036   protein tyrosine phosphatase, non-receptor type 23 [...
FLJ22184              0.036   PREDICTED: hypothetical protein FLJ22184 
MLL4                  0.036   myeloid/lymphoid or mixed-lineage leukemia 4 
MAPK1IP1L             0.036   MAPK-interacting and spindle-stabilizing protein [Ho...
C6orf132              0.036   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.036   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.036   PREDICTED: hypothetical protein LOC647024 
CPSF6                 0.034   cleavage and polyadenylation specific factor 6, 68 ...
FLJ22184              0.034   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.034   PREDICTED: hypothetical protein LOC80164 
NACA                  0.034   nascent polypeptide-associated complex alpha subuni...
RAPH1                 0.034   Ras association and pleckstrin homology domains 1 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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