Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100133749 Sequence: fasta or formatted (131aa) NCBI GI: 169216121
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         14           2
 C cysteine            3.1          4           1
 D aspartate           2.3          3           1
 E glutamate           1.5          2           1
 F phenylalanine       3.1          4           1
 G glycine             6.9          9           1
 H histidine           2.3          3           1
 I isoleucine          1.5          2           1
 K lysine              2.3          3           1
 L leucine             9.9         13           2
 M methionine          0.8          1           1
 N asparagine          0.0          0           0
 P proline            13.0         17           1
 Q glutamine           3.8          5           1
 R arginine            9.9         13           2
 S serine             14.5         19           3
 T threonine           7.6         10           2
 V valine              3.8          5           1
 W tryptophan          2.3          3           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290683          0.044   PREDICTED: hypothetical protein XP_002348231 
LOC441239             0.044   PREDICTED: hypothetical protein LOC441239 
LOC441239             0.040   PREDICTED: hypothetical protein LOC441239 
LOC441239             0.040   PREDICTED: hypothetical protein LOC441239 
LOC441239             0.032   PREDICTED: hypothetical protein LOC441239 
LOC729660             0.028   PREDICTED: similar to Putative uncharacterized prot...
LOC100292425          0.020   PREDICTED: hypothetical protein isoform 2 
LOC100292865          0.020   PREDICTED: hypothetical protein 
LOC100291013          0.020   PREDICTED: hypothetical protein XP_002347574 isofor...
ZDHHC5                0.020   zinc finger, DHHC domain containing 5 
DSCR6                 0.016   Down syndrome critical region protein 6 
IRX2                  0.016   iroquois homeobox 2 
IRX2                  0.016   iroquois homeobox 2 
FAM123B               0.012   family with sequence similarity 123B 
LOC100130599          0.012   PREDICTED: hypothetical protein 
LOC100291552          0.012   PREDICTED: hypothetical protein XP_002346560 
LOC100130599          0.012   PREDICTED: similar to Keratin-associated protein 10...
PHF12                 0.012   PHD finger protein 12 isoform 1 
DALRD3                0.012   DALR anticodon binding domain containing 3 isoform 1...
PHF12                 0.012   PHD finger protein 12 isoform 2 
ADAMTS10              0.012   ADAM metallopeptidase with thrombospondin type 1 mot...
APC2                  0.012   adenomatosis polyposis coli 2 
AGRN                  0.012   agrin 
IGDCC3                0.012   putative neuronal cell adhesion molecule 
ADAMTS7               0.008   ADAM metallopeptidase with thrombospondin type 1 mot...
TSKS                  0.008   testis-specific kinase substrate 
NOTO                  0.008   notochord homeobox 
GPR113                0.008   G-protein coupled receptor 113 isoform 1 
LOC100291627          0.008   PREDICTED: hypothetical protein XP_002345251 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press