Guide to the Human Genome
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Name: LOC100292425 Sequence: fasta or formatted (194aa) NCBI GI: 239756324
Description:

PREDICTED: hypothetical protein isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {114aa} PREDICTED: hypothetical protein isoform 3
alt prot {64aa} PREDICTED: hypothetical protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         22           3
 C cysteine            0.5          1           1
 D aspartate           1.0          2           1
 E glutamate           5.7         11           2
 F phenylalanine       5.7         11           2
 G glycine             6.7         13           1
 H histidine           3.1          6           1
 I isoleucine          2.1          4           1
 K lysine              3.6          7           1
 L leucine            14.9         29           3
 M methionine          1.0          2           1
 N asparagine          2.6          5           1
 P proline             6.7         13           1
 Q glutamine           5.7         11           1
 R arginine            7.7         15           2
 S serine             11.9         23           2
 T threonine           6.2         12           1
 V valine              3.1          6           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein isoform 2 
LOC100291013          1.000   PREDICTED: hypothetical protein XP_002347574 isofor...
LOC100288938          0.680   PREDICTED: hypothetical protein XP_002343404 isofor...
LOC100292425          0.575   PREDICTED: hypothetical protein isoform 3 
LOC100291013          0.575   PREDICTED: hypothetical protein XP_002347575 isofor...
MAPK15                0.023   mitogen-activated protein kinase 15 
ZIC3                  0.023   zinc finger protein of the cerebellum 3 
AMOT                  0.014   angiomotin isoform 2 
AMOT                  0.014   angiomotin isoform 1 
LOC100287250          0.014   PREDICTED: hypothetical protein XP_002344493 
WNK2                  0.014   WNK lysine deficient protein kinase 2 
C15orf39              0.014   hypothetical protein LOC56905 
LOC100133749          0.014   PREDICTED: hypothetical protein 
LOC129293             0.014   hypothetical protein LOC129293 
LOC100291507          0.011   PREDICTED: hypothetical protein XP_002347366 
C6orf27               0.011   G7c protein 
ENAH                  0.011   enabled homolog isoform a 
ENAH                  0.011   enabled homolog isoform b 
PRKAR2B               0.008   cAMP-dependent protein kinase, regulatory subunit be...
NDUFV3                0.008   NADH-ubiquinone oxidoreductase flavoprotein 3 isofor...
FCAR                  0.008   Fc alpha receptor isoform f 
USP31                 0.008   ubiquitin specific peptidase 31 
PLEKHG6               0.008   pleckstrin homology domain-containing family G memb...
PLEKHG6               0.008   pleckstrin homology domain-containing family G memb...
C21orf66              0.008   GC-rich sequence DNA-binding factor candidate isofor...
C21orf66              0.008   GC-rich sequence DNA-binding factor candidate isofor...
BTBD6                 0.008   BTB domain protein BDPL 
SPON2                 0.008   spondin 2, extracellular matrix protein 
SPON2                 0.008   spondin 2, extracellular matrix protein 
LRCH4                 0.008   leucine-rich repeats and calponin homology (CH) doma...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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