Guide to the Human Genome
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Name: LOC100290683 Sequence: fasta or formatted (137aa) NCBI GI: 239747700
Description:

PREDICTED: hypothetical protein XP_002348231

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         17           3
 C cysteine            2.2          3           1
 D aspartate           3.6          5           1
 E glutamate           0.7          1           1
 F phenylalanine       4.4          6           1
 G glycine             5.8          8           1
 H histidine           0.7          1           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine            13.1         18           2
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline            16.8         23           2
 Q glutamine           2.9          4           1
 R arginine            6.6          9           1
 S serine             19.0         26           3
 T threonine           2.2          3           1
 V valine              5.1          7           1
 W tryptophan          2.9          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348231 
LOC728597             0.051   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.051   PREDICTED: doublecortin domain-containing protein E...
SALL3                 0.047   sal-like 3 
LOC100133749          0.043   PREDICTED: hypothetical protein 
FLJ22184              0.043   PREDICTED: hypothetical protein FLJ22184 
WNK2                  0.043   WNK lysine deficient protein kinase 2 
SYVN1                 0.043   synoviolin 1 isoform b 
SYVN1                 0.043   synoviolin 1 isoform a 
WNK4                  0.043   WNK lysine deficient protein kinase 4 
HSFX2                 0.043   PREDICTED: heat shock transcription factor family, ...
LOC100134663          0.043   PREDICTED: hypothetical protein, partial 
DGKK                  0.043   diacylglycerol kinase kappa 
HSFX1                 0.043   heat shock transcription factor family, X linked 1 [H...
AMOT                  0.039   angiomotin isoform 2 
AMOT                  0.039   angiomotin isoform 1 
LOC100131102          0.039   PREDICTED: hypothetical protein 
MED15                 0.039   mediator complex subunit 15 isoform a 
MED15                 0.039   mediator complex subunit 15 isoform b 
RGL3                  0.039   ral guanine nucleotide dissociation stimulator-like...
BRD8                  0.039   bromodomain containing 8 isoform 3 
BRD8                  0.039   bromodomain containing 8 isoform 1 
LOC284297             0.035   hypothetical protein LOC284297 
LOC100131102          0.035   PREDICTED: hypothetical protein 
LOC100131102          0.035   PREDICTED: hypothetical protein 
CTAGE1                0.031   cutaneous T-cell lymphoma-associated antigen 1 isofo...
LOC390595             0.031   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.031   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.031   PREDICTED: hypothetical protein 
SPEG                  0.031   SPEG complex locus 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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