Guide to the Human Genome
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Name: LOC645446 Sequence: fasta or formatted (136aa) NCBI GI: 169215211
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {136aa} PREDICTED: hypothetical protein
alt mRNA {136aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.5         17           2
 C cysteine            5.1          7           1
 D aspartate           3.7          5           1
 E glutamate           4.4          6           2
 F phenylalanine       2.9          4           1
 G glycine            16.2         22           2
 H histidine           3.7          5           2
 I isoleucine          1.5          2           1
 K lysine              1.5          2           1
 L leucine             7.4         10           1
 M methionine          0.7          1           1
 N asparagine          0.7          1           1
 P proline             6.6          9           3
 Q glutamine           3.7          5           1
 R arginine            3.7          5           1
 S serine             14.7         20           2
 T threonine           6.6          9           2
 V valine              2.2          3           1
 W tryptophan          2.2          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC645446             1.000   PREDICTED: hypothetical protein 
LOC645446             1.000   PREDICTED: hypothetical protein 
LOC100289745          0.034   PREDICTED: hypothetical protein XP_002347086 
LOC100288749          0.034   PREDICTED: hypothetical protein XP_002342931 
GDF7                  0.034   growth differentiation factor 7 preproprotein 
LOC284988             0.030   PREDICTED: hypothetical protein 
RING1                 0.030   ring finger protein 1 
MAF                   0.027   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.027   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
LOC100128979          0.027   PREDICTED: hypothetical protein 
LOC100128979          0.027   PREDICTED: hypothetical protein 
LOC100128979          0.027   PREDICTED: hypothetical protein 
LOC100130370          0.027   PREDICTED: similar to hCG1816473 
KRT3                  0.027   keratin 3 
RASIP1                0.027   Ras-interacting protein 1 
LOC100287250          0.023   PREDICTED: hypothetical protein XP_002344493 
IRS4                  0.019   insulin receptor substrate 4 
TRO                   0.019   trophinin isoform 5 
KRT10                 0.019   keratin 10 
PHF6                  0.019   PHD finger protein 6 isoform 1 
PHF6                  0.019   PHD finger protein 6 isoform 1 
PHF6                  0.019   PHD finger protein 6 isoform 2 
EFNB3                 0.019   ephrin-B3 precursor 
KRT9                  0.019   keratin 9 
LOC100292362          0.019   PREDICTED: hypothetical protein 
LOC100290531          0.019   PREDICTED: hypothetical protein XP_002347966 
LOC100288045          0.019   PREDICTED: hypothetical protein XP_002343660 
LOC100132799          0.019   PREDICTED: hypothetical protein 
SOX1                  0.019   SRY (sex determining region Y)-box 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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