Guide to the Human Genome
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Name: PHF6 Sequence: fasta or formatted (365aa) NCBI GI: 62865858
Description:

PHD finger protein 6 isoform 1

Referenced in:

PHD Finger Proteins

Other entries for this name:
alt mRNA [365aa] PHD finger protein 6 isoform 1
alt prot [312aa] PHD finger protein 6 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         17           3
 C cysteine            5.5         20           1
 D aspartate           4.7         17           1
 E glutamate           8.5         31           3
 F phenylalanine       2.7         10           1
 G glycine             6.8         25           2
 H histidine           5.2         19           2
 I isoleucine          3.8         14           1
 K lysine             11.0         40           3
 L leucine             5.2         19           2
 M methionine          2.2          8           1
 N asparagine          3.6         13           1
 P proline             2.7         10           1
 Q glutamine           4.7         17           3
 R arginine            6.3         23           1
 S serine             10.7         39           3
 T threonine           5.5         20           3
 V valine              3.3         12           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PHD finger protein 6 isoform 1 
PHF6                  1.000   PHD finger protein 6 isoform 1 
PHF6                  0.749   PHD finger protein 6 isoform 2 
PHF11                 0.106   PHD finger protein 11 isoform a 
PHF11                 0.104   PHD finger protein 11 isoform b 
G2E3                  0.079   G2/M-phase specific E3 ubiquitin ligase 
MLL                   0.058   myeloid/lymphoid or mixed-lineage leukemia protein [...
MLL4                  0.053   myeloid/lymphoid or mixed-lineage leukemia 4 
PHF7                  0.053   PHD finger protein 7 isoform 1 
PHF7                  0.053   PHD finger protein 7 isoform 2 
MLL3                  0.037   myeloid/lymphoid or mixed-lineage leukemia 3 
RAI1                  0.037   retinoic acid induced 1 
MLL2                  0.037   myeloid/lymphoid or mixed-lineage leukemia 2 
TCF20                 0.033   transcription factor 20 isoform 2 
TCF20                 0.033   transcription factor 20 isoform 1 
PHF16                 0.023   PHD finger protein 16 
PHF16                 0.023   PHD finger protein 16 
PHF15                 0.022   PHD finger protein 15 
PHF17                 0.018   PHD finger protein 17 short isoform 
PHF17                 0.018   PHD finger protein 17 long isoform 
NKAPL                 0.016   NFKB activating protein-like 
WHSC1                 0.016   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.016   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.016   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.016   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
FAM133A               0.016   hypothetical protein LOC286499 
ZMYND11               0.015   zinc finger, MYND domain containing 11 isoform a [H...
ZMYND11               0.015   zinc finger, MYND domain containing 11 isoform b [H...
ZMYND11               0.015   zinc finger, MYND domain containing 11 isoform a [H...
NKAP                  0.015   NFKB activating protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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