Guide to the Human Genome
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Name: PHF6 Sequence: fasta or formatted (312aa) NCBI GI: 63478060
Description:

PHD finger protein 6 isoform 2

Referenced in:

PHD Finger Proteins

Other entries for this name:
alt prot [365aa] PHD finger protein 6 isoform 1
alt prot [365aa] PHD finger protein 6 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         16           3
 C cysteine            5.8         18           2
 D aspartate           3.8         12           1
 E glutamate           7.4         23           3
 F phenylalanine       4.5         14           1
 G glycine             5.8         18           2
 H histidine           5.8         18           2
 I isoleucine          3.8         12           1
 K lysine             10.9         34           3
 L leucine             5.8         18           2
 M methionine          2.2          7           1
 N asparagine          2.9          9           1
 P proline             3.2         10           1
 Q glutamine           3.2         10           1
 R arginine            6.4         20           1
 S serine             11.9         37           3
 T threonine           5.4         17           3
 V valine              3.5         11           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PHD finger protein 6 isoform 2 
PHF6                  0.880   PHD finger protein 6 isoform 1 
PHF6                  0.880   PHD finger protein 6 isoform 1 
PHF11                 0.124   PHD finger protein 11 isoform a 
PHF11                 0.123   PHD finger protein 11 isoform b 
G2E3                  0.093   G2/M-phase specific E3 ubiquitin ligase 
PHF7                  0.064   PHD finger protein 7 isoform 1 
PHF7                  0.064   PHD finger protein 7 isoform 2 
MLL4                  0.053   myeloid/lymphoid or mixed-lineage leukemia 4 
MLL                   0.049   myeloid/lymphoid or mixed-lineage leukemia protein [...
MLL3                  0.043   myeloid/lymphoid or mixed-lineage leukemia 3 
MLL2                  0.043   myeloid/lymphoid or mixed-lineage leukemia 2 
RAI1                  0.035   retinoic acid induced 1 
TCF20                 0.030   transcription factor 20 isoform 2 
TCF20                 0.030   transcription factor 20 isoform 1 
PHF16                 0.027   PHD finger protein 16 
PHF16                 0.027   PHD finger protein 16 
WHSC1                 0.018   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.018   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.018   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.018   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
ZMYND11               0.018   zinc finger, MYND domain containing 11 isoform a [H...
ZMYND11               0.018   zinc finger, MYND domain containing 11 isoform b [H...
ZMYND11               0.018   zinc finger, MYND domain containing 11 isoform a [H...
PHF17                 0.018   PHD finger protein 17 short isoform 
PHF17                 0.018   PHD finger protein 17 long isoform 
PRPF40A               0.016   formin binding protein 3 
RBMX2                 0.016   RNA binding motif protein, X-linked 2 
PHF15                 0.016   PHD finger protein 15 
FAM133B               0.014   hypothetical protein LOC257415 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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