Guide to the Human Genome
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Name: LOC100292362 Sequence: fasta or formatted (280aa) NCBI GI: 239757179
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         31           3
 C cysteine            3.6         10           1
 D aspartate           1.1          3           1
 E glutamate           3.6         10           1
 F phenylalanine       1.4          4           1
 G glycine            10.4         29           2
 H histidine           5.0         14           1
 I isoleucine          0.7          2           1
 K lysine              1.8          5           2
 L leucine            10.7         30           2
 M methionine          1.1          3           1
 N asparagine          0.7          2           1
 P proline             8.2         23           1
 Q glutamine           5.4         15           2
 R arginine           12.5         35           3
 S serine              7.9         22           2
 T threonine           5.4         15           1
 V valine              6.4         18           2
 W tryptophan          1.1          3           1
 Y tyrosine            2.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290531          1.000   PREDICTED: hypothetical protein XP_002347966 
LOC100288045          1.000   PREDICTED: hypothetical protein XP_002343660 
AMN                   0.022   amnionless protein precursor 
AHDC1                 0.022   AT hook, DNA binding motif, containing 1 
LOC100294439          0.014   PREDICTED: similar to Os05g0242100 
LOC100290372          0.014   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.014   PREDICTED: hypothetical protein XP_002342652 
SH2B3                 0.013   SH2B adaptor protein 3 
LOC100292566          0.013   PREDICTED: hypothetical protein 
LOC100291188          0.013   PREDICTED: hypothetical protein XP_002348260 
LOC100287511          0.013   PREDICTED: hypothetical protein XP_002342250 
LOC100132848          0.013   PREDICTED: hypothetical protein 
MESP2                 0.013   mesoderm posterior 2 homolog 
LOC100294010          0.011   PREDICTED: hypothetical protein 
LOC100291514          0.011   PREDICTED: hypothetical protein XP_002347163 
LOC100289311          0.011   PREDICTED: hypothetical protein XP_002343026 
LOC100132234          0.011   PREDICTED: hypothetical protein LOC100132234 
LOC729806             0.011   PREDICTED: similar to hCG1725380 
LOC100132234          0.011   PREDICTED: hypothetical protein LOC100132234 
LOC729806             0.011   PREDICTED: similar to hCG1725380 
LOC100132234          0.011   PREDICTED: hypothetical protein LOC100132234 
LOC729806             0.011   PREDICTED: similar to hCG1725380 
COL27A1               0.011   collagen, type XXVII, alpha 1 
BRPF3                 0.011   bromodomain and PHD finger containing, 3 
VWA5B1                0.011   von Willebrand factor A domain containing 5B1 [Homo...
ZNF716                0.009   PREDICTED: zinc finger protein 716 
FGF2                  0.009   fibroblast growth factor 2 
LOC645446             0.009   PREDICTED: hypothetical protein 
LOC100293050          0.009   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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