Guide to the Human Genome
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Name: SLC6A20 Sequence: fasta or formatted (592aa) NCBI GI: 11181770
Description:

solute carrier family 6, member 20 isoform 1

Referenced in:

Kidney
Solute Carrier Families

Other entries for this name:
alt prot [555aa] solute carrier family 6, member 20 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         50           2
 C cysteine            2.4         14           1
 D aspartate           2.4         14           1
 E glutamate           3.9         23           2
 F phenylalanine       5.7         34           2
 G glycine             7.1         42           3
 H histidine           0.8          5           1
 I isoleucine          6.4         38           2
 K lysine              3.5         21           2
 L leucine            13.0         77           3
 M methionine          3.0         18           1
 N asparagine          4.2         25           2
 P proline             3.7         22           1
 Q glutamine           3.2         19           1
 R arginine            2.4         14           2
 S serine              8.3         49           2
 T threonine           5.4         32           1
 V valine              7.4         44           3
 W tryptophan          2.7         16           1
 Y tyrosine            5.9         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 6, member 20 isoform 1 
SLC6A20               0.921   solute carrier family 6, member 20 isoform 2 
SLC6A18               0.493   solute carrier family 6, member 18 
SLC6A19               0.488   solute carrier family 6, member 19 
SLC6A15               0.436   solute carrier family 6, member 15 isoform 1 
SLC6A17               0.416   solute carrier family 6, member 17 
SLC6A15               0.376   solute carrier family 6, member 15 isoform 3 
SLC6A8                0.296   solute carrier family 6 member 8 isoform 1 
SLC6A5                0.290   solute carrier family 6 (neurotransmitter transporte...
SLC6A1                0.290   solute carrier family 6 (neurotransmitter transport...
SLC6A16               0.290   solute carrier family 6, member 16 
SLC6A9                0.289   solute carrier family 6 member 9 isoform 3 
SLC6A9                0.289   solute carrier family 6 member 9 isoform 2 
SLC6A9                0.289   solute carrier family 6 member 9 isoform 1 
SLC6A4                0.284   solute carrier family 6 member 4 
SLC6A12               0.281   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.281   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.281   solute carrier family 6 (neurotransmitter transport...
SLC6A8                0.277   solute carrier family 6 member 8 isoform 2 
SLC6A11               0.274   solute carrier family 6 (neurotransmitter transporter...
SLC6A7                0.270   solute carrier family 6, member 7 
SLC6A6                0.270   solute carrier family 6 (neurotransmitter transport...
SLC6A6                0.270   solute carrier family 6 (neurotransmitter transporte...
SLC6A13               0.269   solute carrier family 6 (neurotransmitter transporte...
SLC6A2                0.265   solute carrier family 6 member 2 
SLC6A14               0.257   solute carrier family 6 (amino acid transporter), mem...
SLC6A8                0.226   solute carrier family 6 member 8 isoform 3 
SLC6A3                0.221   solute carrier family 6 (neurotransmitter transporter...
SLC6A15               0.191   solute carrier family 6, member 15 isoform 2 
SLC6A6                0.098   solute carrier family 6 (neurotransmitter transport...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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