Guide to the Human Genome
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Name: SLC6A17 Sequence: fasta or formatted (727aa) NCBI GI: 58219014
Description:

solute carrier family 6, member 17

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         48           2
 C cysteine            1.9         14           2
 D aspartate           3.2         23           2
 E glutamate           5.5         40           3
 F phenylalanine       6.7         49           2
 G glycine             7.6         55           3
 H histidine           1.5         11           1
 I isoleucine          6.1         44           3
 K lysine              4.3         31           2
 L leucine            11.4         83           3
 M methionine          3.4         25           2
 N asparagine          3.9         28           2
 P proline             5.0         36           2
 Q glutamine           2.3         17           1
 R arginine            3.0         22           2
 S serine              7.7         56           2
 T threonine           5.1         37           2
 V valine              8.7         63           2
 W tryptophan          1.9         14           1
 Y tyrosine            4.3         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 6, member 17 
SLC6A15               0.679   solute carrier family 6, member 15 isoform 1 
SLC6A15               0.590   solute carrier family 6, member 15 isoform 3 
SLC6A20               0.338   solute carrier family 6, member 20 isoform 1 
SLC6A19               0.337   solute carrier family 6, member 19 
SLC6A18               0.330   solute carrier family 6, member 18 
SLC6A20               0.294   solute carrier family 6, member 20 isoform 2 
SLC6A16               0.293   solute carrier family 6, member 16 
SLC6A15               0.244   solute carrier family 6, member 15 isoform 2 
SLC6A7                0.231   solute carrier family 6, member 7 
SLC6A14               0.220   solute carrier family 6 (amino acid transporter), mem...
SLC6A1                0.211   solute carrier family 6 (neurotransmitter transport...
SLC6A5                0.199   solute carrier family 6 (neurotransmitter transporte...
SLC6A4                0.193   solute carrier family 6 member 4 
SLC6A9                0.190   solute carrier family 6 member 9 isoform 3 
SLC6A9                0.190   solute carrier family 6 member 9 isoform 1 
SLC6A9                0.189   solute carrier family 6 member 9 isoform 2 
SLC6A8                0.185   solute carrier family 6 member 8 isoform 1 
SLC6A12               0.183   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.183   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.183   solute carrier family 6 (neurotransmitter transport...
SLC6A13               0.179   solute carrier family 6 (neurotransmitter transporte...
SLC6A8                0.175   solute carrier family 6 member 8 isoform 2 
SLC6A2                0.174   solute carrier family 6 member 2 
SLC6A6                0.173   solute carrier family 6 (neurotransmitter transport...
SLC6A6                0.173   solute carrier family 6 (neurotransmitter transporte...
SLC6A11               0.172   solute carrier family 6 (neurotransmitter transporter...
SLC6A3                0.172   solute carrier family 6 (neurotransmitter transporter...
SLC6A8                0.125   solute carrier family 6 member 8 isoform 3 
SLC6A6                0.088   solute carrier family 6 (neurotransmitter transport...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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