Guide to the Human Genome
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Name: SLC6A8 Sequence: fasta or formatted (635aa) NCBI GI: 5032097
Description:

solute carrier family 6 member 8 isoform 1

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [625aa] solute carrier family 6 member 8 isoform 2
alt prot [520aa] solute carrier family 6 member 8 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         51           2
 C cysteine            3.5         22           2
 D aspartate           3.5         22           2
 E glutamate           3.3         21           1
 F phenylalanine       6.6         42           3
 G glycine             9.4         60           3
 H histidine           1.1          7           2
 I isoleucine          5.4         34           2
 K lysine              3.1         20           2
 L leucine            11.5         73           4
 M methionine          3.0         19           1
 N asparagine          3.0         19           3
 P proline             5.2         33           2
 Q glutamine           2.0         13           1
 R arginine            3.0         19           2
 S serine              5.4         34           2
 T threonine           4.7         30           3
 V valine              9.4         60           4
 W tryptophan          3.8         24           2
 Y tyrosine            5.0         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 6 member 8 isoform 1 
SLC6A8                0.979   solute carrier family 6 member 8 isoform 2 
SLC6A8                0.817   solute carrier family 6 member 8 isoform 3 
SLC6A11               0.508   solute carrier family 6 (neurotransmitter transporter...
SLC6A6                0.505   solute carrier family 6 (neurotransmitter transport...
SLC6A6                0.505   solute carrier family 6 (neurotransmitter transporte...
SLC6A13               0.498   solute carrier family 6 (neurotransmitter transporte...
SLC6A12               0.494   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.494   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.494   solute carrier family 6 (neurotransmitter transport...
SLC6A1                0.466   solute carrier family 6 (neurotransmitter transport...
SLC6A9                0.378   solute carrier family 6 member 9 isoform 1 
SLC6A7                0.378   solute carrier family 6, member 7 
SLC6A9                0.375   solute carrier family 6 member 9 isoform 3 
SLC6A9                0.375   solute carrier family 6 member 9 isoform 2 
SLC6A2                0.375   solute carrier family 6 member 2 
SLC6A5                0.374   solute carrier family 6 (neurotransmitter transporte...
SLC6A3                0.368   solute carrier family 6 (neurotransmitter transporter...
SLC6A4                0.363   solute carrier family 6 member 4 
SLC6A14               0.330   solute carrier family 6 (amino acid transporter), mem...
SLC6A18               0.274   solute carrier family 6, member 18 
SLC6A20               0.265   solute carrier family 6, member 20 isoform 1 
SLC6A19               0.259   solute carrier family 6, member 19 
SLC6A20               0.222   solute carrier family 6, member 20 isoform 2 
SLC6A17               0.204   solute carrier family 6, member 17 
SLC6A15               0.203   solute carrier family 6, member 15 isoform 1 
SLC6A15               0.151   solute carrier family 6, member 15 isoform 3 
SLC6A16               0.142   solute carrier family 6, member 16 
SLC6A6                0.131   solute carrier family 6 (neurotransmitter transport...
SLC6A15               0.125   solute carrier family 6, member 15 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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