Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC6A8 Sequence: fasta or formatted (520aa) NCBI GI: 218563758
Description:

solute carrier family 6 member 8 isoform 3

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [625aa] solute carrier family 6 member 8 isoform 2
alt prot [635aa] solute carrier family 6 member 8 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         43           2
 C cysteine            3.8         20           2
 D aspartate           3.5         18           2
 E glutamate           3.3         17           1
 F phenylalanine       6.7         35           3
 G glycine             7.7         40           2
 H histidine           1.3          7           2
 I isoleucine          5.0         26           2
 K lysine              2.7         14           1
 L leucine            12.1         63           4
 M methionine          3.1         16           1
 N asparagine          3.1         16           3
 P proline             4.2         22           1
 Q glutamine           2.1         11           1
 R arginine            2.9         15           2
 S serine              5.6         29           2
 T threonine           5.2         27           3
 V valine              9.8         51           4
 W tryptophan          4.2         22           2
 Y tyrosine            5.4         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 6 member 8 isoform 3 
SLC6A8                1.000   solute carrier family 6 member 8 isoform 1 
SLC6A8                0.976   solute carrier family 6 member 8 isoform 2 
SLC6A11               0.535   solute carrier family 6 (neurotransmitter transporter...
SLC6A6                0.529   solute carrier family 6 (neurotransmitter transport...
SLC6A6                0.529   solute carrier family 6 (neurotransmitter transporte...
SLC6A13               0.529   solute carrier family 6 (neurotransmitter transporte...
SLC6A12               0.516   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.516   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.516   solute carrier family 6 (neurotransmitter transport...
SLC6A1                0.475   solute carrier family 6 (neurotransmitter transport...
SLC6A9                0.372   solute carrier family 6 member 9 isoform 3 
SLC6A9                0.372   solute carrier family 6 member 9 isoform 2 
SLC6A9                0.372   solute carrier family 6 member 9 isoform 1 
SLC6A7                0.372   solute carrier family 6, member 7 
SLC6A5                0.367   solute carrier family 6 (neurotransmitter transporte...
SLC6A2                0.364   solute carrier family 6 member 2 
SLC6A3                0.357   solute carrier family 6 (neurotransmitter transporter...
SLC6A4                0.346   solute carrier family 6 member 4 
SLC6A14               0.317   solute carrier family 6 (amino acid transporter), mem...
SLC6A18               0.257   solute carrier family 6, member 18 
SLC6A20               0.248   solute carrier family 6, member 20 isoform 1 
SLC6A19               0.242   solute carrier family 6, member 19 
SLC6A20               0.193   solute carrier family 6, member 20 isoform 2 
SLC6A17               0.168   solute carrier family 6, member 17 
SLC6A15               0.164   solute carrier family 6, member 15 isoform 1 
SLC6A15               0.164   solute carrier family 6, member 15 isoform 3 
SLC6A16               0.130   solute carrier family 6, member 16 
SLC6A6                0.070   solute carrier family 6 (neurotransmitter transport...
SLC6A15               0.070   solute carrier family 6, member 15 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press