Guide to the Human Genome
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Name: SLC6A6 Sequence: fasta or formatted (620aa) NCBI GI: 197276623
Description:

solute carrier family 6 (neurotransmitter transporter, taurine), member 6 isoform a

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [200aa] solute carrier family 6 (neurotransmitter transporter, taurine), ...
alt mRNA [620aa] solute carrier family 6 (neurotransmitter transporter, taurine), ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         34           2
 C cysteine            3.1         19           1
 D aspartate           3.1         19           1
 E glutamate           4.2         26           1
 F phenylalanine       6.9         43           2
 G glycine             8.5         53           3
 H histidine           1.0          6           1
 I isoleucine          7.1         44           3
 K lysine              4.4         27           1
 L leucine            11.3         70           4
 M methionine          2.9         18           2
 N asparagine          2.7         17           1
 P proline             5.6         35           2
 Q glutamine           2.1         13           1
 R arginine            3.1         19           2
 S serine              6.8         42           2
 T threonine           5.2         32           1
 V valine              7.9         49           2
 W tryptophan          3.2         20           1
 Y tyrosine            5.5         34           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 6 (neurotransmitter transport... 
SLC6A6                1.000   solute carrier family 6 (neurotransmitter transporte...
SLC6A11               0.596   solute carrier family 6 (neurotransmitter transporter...
SLC6A13               0.588   solute carrier family 6 (neurotransmitter transporte...
SLC6A12               0.582   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.582   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.582   solute carrier family 6 (neurotransmitter transport...
SLC6A8                0.521   solute carrier family 6 member 8 isoform 1 
SLC6A8                0.507   solute carrier family 6 member 8 isoform 2 
SLC6A1                0.466   solute carrier family 6 (neurotransmitter transport...
SLC6A8                0.446   solute carrier family 6 member 8 isoform 3 
SLC6A5                0.392   solute carrier family 6 (neurotransmitter transporte...
SLC6A2                0.388   solute carrier family 6 member 2 
SLC6A3                0.375   solute carrier family 6 (neurotransmitter transporter...
SLC6A7                0.373   solute carrier family 6, member 7 
SLC6A4                0.360   solute carrier family 6 member 4 
SLC6A9                0.352   solute carrier family 6 member 9 isoform 1 
SLC6A9                0.350   solute carrier family 6 member 9 isoform 3 
SLC6A9                0.350   solute carrier family 6 member 9 isoform 2 
SLC6A14               0.340   solute carrier family 6 (amino acid transporter), mem...
SLC6A6                0.319   solute carrier family 6 (neurotransmitter transport...
SLC6A19               0.269   solute carrier family 6, member 19 
SLC6A18               0.259   solute carrier family 6, member 18 
SLC6A20               0.249   solute carrier family 6, member 20 isoform 1 
SLC6A20               0.205   solute carrier family 6, member 20 isoform 2 
SLC6A17               0.197   solute carrier family 6, member 17 
SLC6A15               0.182   solute carrier family 6, member 15 isoform 1 
SLC6A15               0.129   solute carrier family 6, member 15 isoform 3 
SLC6A15               0.125   solute carrier family 6, member 15 isoform 2 
SLC6A16               0.115   solute carrier family 6, member 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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