Guide to the Human Genome
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Name: SLC6A8 Sequence: fasta or formatted (625aa) NCBI GI: 218563756
Description:

solute carrier family 6 member 8 isoform 2

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [520aa] solute carrier family 6 member 8 isoform 3
alt prot [635aa] solute carrier family 6 member 8 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         49           2
 C cysteine            3.5         22           2
 D aspartate           3.4         21           2
 E glutamate           3.4         21           1
 F phenylalanine       6.7         42           3
 G glycine             9.6         60           3
 H histidine           1.1          7           2
 I isoleucine          5.0         31           2
 K lysine              3.0         19           2
 L leucine            11.4         71           4
 M methionine          3.0         19           1
 N asparagine          3.0         19           3
 P proline             5.3         33           2
 Q glutamine           2.1         13           1
 R arginine            3.0         19           2
 S serine              5.3         33           2
 T threonine           4.8         30           3
 V valine              9.6         60           4
 W tryptophan          3.8         24           2
 Y tyrosine            5.1         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 6 member 8 isoform 2 
SLC6A8                0.992   solute carrier family 6 member 8 isoform 1 
SLC6A8                0.808   solute carrier family 6 member 8 isoform 3 
SLC6A11               0.501   solute carrier family 6 (neurotransmitter transporter...
SLC6A6                0.498   solute carrier family 6 (neurotransmitter transport...
SLC6A6                0.498   solute carrier family 6 (neurotransmitter transporte...
SLC6A13               0.490   solute carrier family 6 (neurotransmitter transporte...
SLC6A12               0.485   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.485   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.485   solute carrier family 6 (neurotransmitter transport...
SLC6A1                0.458   solute carrier family 6 (neurotransmitter transport...
SLC6A7                0.371   solute carrier family 6, member 7 
SLC6A9                0.369   solute carrier family 6 member 9 isoform 1 
SLC6A2                0.367   solute carrier family 6 member 2 
SLC6A9                0.366   solute carrier family 6 member 9 isoform 3 
SLC6A9                0.366   solute carrier family 6 member 9 isoform 2 
SLC6A5                0.366   solute carrier family 6 (neurotransmitter transporte...
SLC6A3                0.358   solute carrier family 6 (neurotransmitter transporter...
SLC6A4                0.355   solute carrier family 6 member 4 
SLC6A14               0.321   solute carrier family 6 (amino acid transporter), mem...
SLC6A18               0.260   solute carrier family 6, member 18 
SLC6A20               0.252   solute carrier family 6, member 20 isoform 1 
SLC6A19               0.248   solute carrier family 6, member 19 
SLC6A20               0.208   solute carrier family 6, member 20 isoform 2 
SLC6A17               0.195   solute carrier family 6, member 17 
SLC6A15               0.192   solute carrier family 6, member 15 isoform 1 
SLC6A15               0.139   solute carrier family 6, member 15 isoform 3 
SLC6A6                0.132   solute carrier family 6 (neurotransmitter transport...
SLC6A15               0.127   solute carrier family 6, member 15 isoform 2 
SLC6A16               0.108   solute carrier family 6, member 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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