Guide to the Human Genome
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Name: SLC6A11 Sequence: fasta or formatted (632aa) NCBI GI: 7657587
Description:

solute carrier family 6 (neurotransmitter transporter, GABA), member 11

Referenced in:

GABA and Glycine
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         48           2
 C cysteine            4.3         27           2
 D aspartate           2.4         15           1
 E glutamate           5.2         33           2
 F phenylalanine       6.0         38           2
 G glycine             8.7         55           3
 H histidine           1.4          9           1
 I isoleucine          7.8         49           3
 K lysine              4.1         26           1
 L leucine            10.4         66           2
 M methionine          3.2         20           2
 N asparagine          3.8         24           3
 P proline             4.6         29           2
 Q glutamine           1.6         10           1
 R arginine            3.2         20           2
 S serine              5.5         35           2
 T threonine           5.5         35           2
 V valine              6.6         42           2
 W tryptophan          3.0         19           1
 Y tyrosine            5.1         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 6 (neurotransmitter transporter... 
SLC6A13               0.660   solute carrier family 6 (neurotransmitter transporte...
SLC6A12               0.630   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.630   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.630   solute carrier family 6 (neurotransmitter transport...
SLC6A6                0.582   solute carrier family 6 (neurotransmitter transport...
SLC6A6                0.582   solute carrier family 6 (neurotransmitter transporte...
SLC6A8                0.512   solute carrier family 6 member 8 isoform 1 
SLC6A8                0.498   solute carrier family 6 member 8 isoform 2 
SLC6A1                0.473   solute carrier family 6 (neurotransmitter transport...
SLC6A8                0.441   solute carrier family 6 member 8 isoform 3 
SLC6A9                0.380   solute carrier family 6 member 9 isoform 2 
SLC6A9                0.380   solute carrier family 6 member 9 isoform 3 
SLC6A9                0.380   solute carrier family 6 member 9 isoform 1 
SLC6A5                0.379   solute carrier family 6 (neurotransmitter transporte...
SLC6A2                0.376   solute carrier family 6 member 2 
SLC6A7                0.376   solute carrier family 6, member 7 
SLC6A4                0.373   solute carrier family 6 member 4 
SLC6A3                0.361   solute carrier family 6 (neurotransmitter transporter...
SLC6A14               0.336   solute carrier family 6 (amino acid transporter), mem...
SLC6A19               0.260   solute carrier family 6, member 19 
SLC6A20               0.247   solute carrier family 6, member 20 isoform 1 
SLC6A18               0.243   solute carrier family 6, member 18 
SLC6A20               0.204   solute carrier family 6, member 20 isoform 2 
SLC6A17               0.192   solute carrier family 6, member 17 
SLC6A15               0.180   solute carrier family 6, member 15 isoform 1 
SLC6A6                0.161   solute carrier family 6 (neurotransmitter transport...
SLC6A16               0.134   solute carrier family 6, member 16 
SLC6A15               0.127   solute carrier family 6, member 15 isoform 3 
SLC6A15               0.116   solute carrier family 6, member 15 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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