Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC6A9 Sequence: fasta or formatted (633aa) NCBI GI: 67782317
Description:

solute carrier family 6 member 9 isoform 3

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [652aa] solute carrier family 6 member 9 isoform 1
alt prot [706aa] solute carrier family 6 member 9 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         43           2
 C cysteine            2.7         17           1
 D aspartate           3.2         20           2
 E glutamate           2.4         15           2
 F phenylalanine       6.8         43           3
 G glycine             9.0         57           3
 H histidine           1.7         11           1
 I isoleucine          7.0         44           2
 K lysine              2.5         16           2
 L leucine            11.7         74           3
 M methionine          3.2         20           2
 N asparagine          4.1         26           2
 P proline             5.2         33           3
 Q glutamine           3.2         20           1
 R arginine            3.6         23           1
 S serine              6.6         42           2
 T threonine           4.6         29           1
 V valine              7.9         50           2
 W tryptophan          2.5         16           1
 Y tyrosine            5.4         34           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 6 member 9 isoform 3 
SLC6A9                0.984   solute carrier family 6 member 9 isoform 2 
SLC6A9                0.984   solute carrier family 6 member 9 isoform 1 
SLC6A5                0.475   solute carrier family 6 (neurotransmitter transporte...
SLC6A7                0.464   solute carrier family 6, member 7 
SLC6A14               0.389   solute carrier family 6 (amino acid transporter), mem...
SLC6A11               0.384   solute carrier family 6 (neurotransmitter transporter...
SLC6A1                0.384   solute carrier family 6 (neurotransmitter transport...
SLC6A8                0.381   solute carrier family 6 member 8 isoform 1 
SLC6A13               0.381   solute carrier family 6 (neurotransmitter transporte...
SLC6A12               0.374   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.374   solute carrier family 6 (neurotransmitter transport...
SLC6A12               0.374   solute carrier family 6 (neurotransmitter transport...
SLC6A8                0.368   solute carrier family 6 member 8 isoform 2 
SLC6A4                0.360   solute carrier family 6 member 4 
SLC6A2                0.353   solute carrier family 6 member 2 
SLC6A3                0.352   solute carrier family 6 (neurotransmitter transporter...
SLC6A6                0.346   solute carrier family 6 (neurotransmitter transport...
SLC6A6                0.346   solute carrier family 6 (neurotransmitter transporte...
SLC6A8                0.310   solute carrier family 6 member 8 isoform 3 
SLC6A19               0.286   solute carrier family 6, member 19 
SLC6A18               0.265   solute carrier family 6, member 18 
SLC6A20               0.264   solute carrier family 6, member 20 isoform 1 
SLC6A20               0.216   solute carrier family 6, member 20 isoform 2 
SLC6A17               0.214   solute carrier family 6, member 17 
SLC6A15               0.198   solute carrier family 6, member 15 isoform 1 
SLC6A16               0.154   solute carrier family 6, member 16 
SLC6A15               0.144   solute carrier family 6, member 15 isoform 3 
SLC6A15               0.112   solute carrier family 6, member 15 isoform 2 
SLC6A6                0.104   solute carrier family 6 (neurotransmitter transport...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press