Guide to the Human Genome
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Name: FAM170A Sequence: fasta or formatted (329aa) NCBI GI: 111548650
Description:

family with sequence similarity 170, member A

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0         10           1
 C cysteine            3.0         10           2
 D aspartate           3.0         10           1
 E glutamate          14.9         49           4
 F phenylalanine       1.8          6           1
 G glycine             6.7         22           3
 H histidine           2.7          9           1
 I isoleucine          1.5          5           1
 K lysine              5.5         18           1
 L leucine             5.5         18           2
 M methionine          3.3         11           1
 N asparagine          2.7          9           1
 P proline             5.5         18           2
 Q glutamine           6.4         21           1
 R arginine            6.4         21           2
 S serine             11.9         39           3
 T threonine           6.7         22           2
 V valine              6.7         22           2
 W tryptophan          1.2          4           1
 Y tyrosine            1.5          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 170, member A [Homo... 
FAM170B               0.131   PREDICTED: family with sequence similarity 170, mem...
FAM170B               0.131   PREDICTED: family with sequence similarity 170, memb...
FAM170B               0.131   PREDICTED: family with sequence similarity 170, memb...
C1orf111              0.049   hypothetical protein LOC284680 
PTMA                  0.028   prothymosin, alpha isoform 1 
PTMA                  0.028   prothymosin, alpha isoform 2 
TTBK1                 0.025   tau tubulin kinase 1 
MYT1                  0.023   myelin transcription factor 1 
SLC24A1               0.023   solute carrier family 24 (sodium/potassium/calcium ex...
SHROOM4               0.023   shroom family member 4 
CENPB                 0.023   centromere protein B 
MYST4                 0.023   MYST histone acetyltransferase (monocytic leukemia)...
DCAF8L2               0.022   DDB1 and CUL4 associated factor 8-like 2 
EIF5B                 0.022   eukaryotic translation initiation factor 5B 
RYR1                  0.020   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.020   skeletal muscle ryanodine receptor isoform 1 
GTF2A1                0.020   TFIIA alpha, p55 isoform 2 
GTF2A1                0.020   TFIIA alpha, p55 isoform 1 
RANGAP1               0.020   Ran GTPase activating protein 1 
ZUFSP                 0.020   zinc finger with UFM1-specific peptidase domain [Hom...
LOC728026             0.020   PREDICTED: hypothetical protein 
LOC728026             0.020   PREDICTED: hypothetical protein 
LOC728026             0.020   PREDICTED: hypothetical protein 
WDR87                 0.019   NYD-SP11 protein 
HDAC5                 0.019   histone deacetylase 5 isoform 3 
HDAC5                 0.019   histone deacetylase 5 isoform 1 
LOC441454             0.019   PREDICTED: hypothetical protein 
ACBD3                 0.019   acyl-Coenzyme A binding domain containing 3 
LOC728792             0.019   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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