Guide to the Human Genome
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Name: LOC728026 Sequence: fasta or formatted (109aa) NCBI GI: 169217548
Description:

PREDICTED: hypothetical protein

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt mRNA [109aa] PREDICTED: hypothetical protein
alt mRNA [109aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         12           2
 C cysteine            0.0          0           0
 D aspartate          17.4         19           3
 E glutamate          26.6         29           6
 F phenylalanine       0.0          0           0
 G glycine             8.3          9           1
 H histidine           0.0          0           0
 I isoleucine          1.8          2           2
 K lysine             10.1         11           2
 L leucine             0.9          1           1
 M methionine          0.9          1           1
 N asparagine          5.5          6           1
 P proline             0.9          1           1
 Q glutamine           1.8          2           1
 R arginine            1.8          2           1
 S serine              4.6          5           2
 T threonine           3.7          4           1
 V valine              4.6          5           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728026             1.000   PREDICTED: hypothetical protein 
LOC728026             1.000   PREDICTED: hypothetical protein 
LOC441454             0.979   PREDICTED: hypothetical protein 
PTMA                  0.902   prothymosin, alpha isoform 2 
PTMA                  0.881   prothymosin, alpha isoform 1 
PTMS                  0.285   parathymosin 
YTHDC1                0.176   splicing factor YT521-B isoform 2 
YTHDC1                0.176   splicing factor YT521-B isoform 1 
RPGR                  0.171   retinitis pigmentosa GTPase regulator isoform C [Hom...
LOC647020             0.166   PREDICTED: similar to acidic (leucine-rich) nuclear...
LOC647020             0.166   PREDICTED: similar to acidic (leucine-rich) nuclear...
UBTF                  0.166   upstream binding transcription factor, RNA polymera...
UBTF                  0.166   upstream binding transcription factor, RNA polymera...
UBTF                  0.166   upstream binding transcription factor, RNA polymerase...
NCL                   0.166   nucleolin 
CENPB                 0.161   centromere protein B 
ANP32B                0.161   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
TRIM44                0.161   DIPB protein 
MYT1                  0.150   myelin transcription factor 1 
MYT1L                 0.150   myelin transcription factor 1-like 
LOC728792             0.150   PREDICTED: hypothetical protein 
CDC2L2                0.140   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.140   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.140   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.140   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.140   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.140   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.140   cell division cycle 2-like 1 (PITSLRE proteins) isof...
EIF5B                 0.140   eukaryotic translation initiation factor 5B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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