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Search of human proteins with 169211520
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169211520 PREDICTED: hypothetical protein [Homo sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169211520 PREDICTED: hypothetical protein [Homo sapiens] 655 0.0
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 43 3e-04
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 42 0.001
gi|122114658 hypothetical protein LOC23053 [Homo sapiens] 42 0.001
gi|122937321 UNC homeobox [Homo sapiens] 42 0.001
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 42 0.001
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 41 0.001
gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 41 0.002
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 40 0.003
gi|13540521 basic helix-loop-helix domain containing, class B, 3... 40 0.003
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.008
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 39 0.008
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 39 0.008
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 39 0.008
gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Ho... 39 0.008
gi|194272161 1D-myo-inositol-trisphosphate 3-kinase B [Homo sapi... 38 0.010
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 38 0.013
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 38 0.013
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 38 0.013
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 38 0.013
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 38 0.013
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 38 0.013
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 38 0.013
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 38 0.013
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 37 0.017
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 37 0.017
gi|48762934 alpha 2 type I collagen [Homo sapiens] 37 0.023
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 37 0.023
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 37 0.023
>gi|169211520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 312
Score = 655 bits (1689), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MANRNETFGSEQENANKCTDNSENRTQTLSPLPPNPVSRYSWCIGSYEHKQMLQRNLFLL 60
MANRNETFGSEQENANKCTDNSENRTQTLSPLPPNPVSRYSWCIGSYEHKQMLQRNLFLL
Sbjct: 1 MANRNETFGSEQENANKCTDNSENRTQTLSPLPPNPVSRYSWCIGSYEHKQMLQRNLFLL 60
Query: 61 LNCSKHVSVFLALGMFWCAHKLYRHDLGLRSVGGPCDTGSPGPAPGRCRPIAARLAARPA 120
LNCSKHVSVFLALGMFWCAHKLYRHDLGLRSVGGPCDTGSPGPAPGRCRPIAARLAARPA
Sbjct: 61 LNCSKHVSVFLALGMFWCAHKLYRHDLGLRSVGGPCDTGSPGPAPGRCRPIAARLAARPA 120
Query: 121 PGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPGRGGGSCGPAGTAAGGKLRARLL 180
PGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPGRGGGSCGPAGTAAGGKLRARLL
Sbjct: 121 PGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPGRGGGSCGPAGTAAGGKLRARLL 180
Query: 181 RLPDCSLALGKASYSVWSPTHFPVPPLLGRLPCVLLEGPARCQRRVETFAAGAGLFVGPG 240
RLPDCSLALGKASYSVWSPTHFPVPPLLGRLPCVLLEGPARCQRRVETFAAGAGLFVGPG
Sbjct: 181 RLPDCSLALGKASYSVWSPTHFPVPPLLGRLPCVLLEGPARCQRRVETFAAGAGLFVGPG 240
Query: 241 ASPSPLPLCRSPSALRSPPRRLQRPEKPLSQWGEGLGRARRAPRIETRASAATAAPLGCL 300
ASPSPLPLCRSPSALRSPPRRLQRPEKPLSQWGEGLGRARRAPRIETRASAATAAPLGCL
Sbjct: 241 ASPSPLPLCRSPSALRSPPRRLQRPEKPLSQWGEGLGRARRAPRIETRASAATAAPLGCL 300
Query: 301 FSRLFANYLQGA 312
FSRLFANYLQGA
Sbjct: 301 FSRLFANYLQGA 312
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 43.1 bits (100), Expect = 3e-04
Identities = 58/214 (27%), Positives = 72/214 (33%), Gaps = 26/214 (12%)
Query: 97 DTGSPG-PAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGES 155
D G G P G + R R A GG A+G RR + R P
Sbjct: 241 DAGGAGRPLDGYISALLRRRRRRGAGQPRTSPGG------ADGGPRRQNSVRQRPPDASP 294
Query: 156 GPGRGGGSCGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFP---VPPLLGRLP 212
PG + P+ GG P AL +A S W P PP P
Sbjct: 295 SPGSARPAREPSLERVGGH--------PTSPAALSRAWASSWESEAAPEPAAPPAAPSPP 346
Query: 213 CVLLEGPARCQRRVETFAAGAGLFVGPGASPSPLPLCRSPSALRSPPRRLQRPEKPLSQW 272
EG + + A G A P PL R S +SPPR R +
Sbjct: 347 DSPAEGRLVKAQYIPGAQAATRGLPGRAARRKPPPLTRGRSVEQSPPRERPRAAGRRGRM 406
Query: 273 GEGLG-----RARRAPRIETRAS---AATAAPLG 298
E G RAR+A R ++ S A+A P G
Sbjct: 407 AEASGRRGSPRARKASRSQSETSLLGRASAVPSG 440
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 41.6 bits (96), Expect = 0.001
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 121 PGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPGRGGGSCGPAGTAAGGKLRARLL 180
PG AG GG C P G+ + L AG GPG GGGS G AG + A ++
Sbjct: 82 PGGPAGGGGACSMGPLTGSYNVNMAL-----AGGPGPGGGGGSSGGAGALSA----AGVI 132
Query: 181 RLPDCSLALGKASYSVWSPTHFPVPPLLGRLPCV 214
R+P G ++ T P P + +P V
Sbjct: 133 RVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGV 166
>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
Length = 1842
Score = 41.6 bits (96), Expect = 0.001
Identities = 58/195 (29%), Positives = 72/195 (36%), Gaps = 41/195 (21%)
Query: 89 LRSVGGPCDTGSPGPAPGRCRPIAARLAARPA-PGTAAGRGGCCEALPAEGTCRRLVP-- 145
L S G +G + R RP+ A RP PGT R G E +P+ R +
Sbjct: 512 LPSRPGASRSGGLEESRDRPRPLPTEPAVRPKEPGTK--RKGLGEGVPSSQRGPRRLSAE 569
Query: 146 -----LHPRSPAGESGPGRGGGSCGPAGTAAGGKLRARL-------------LRLPDCSL 187
LH P G GG G G+A GG R RL + L D SL
Sbjct: 570 GGDKALHKMGPGGGKAKALGGAGSGSKGSAGGGSKR-RLSSEDSSLEPDLAEMSLDDSSL 628
Query: 188 ALG-KASYSVWSPTHFPVPPLLG--RLPCVLLEGPARCQRRVETFAAGAGLFVGPGASPS 244
ALG +AS P P PL G R P L P +T+ G++ G P
Sbjct: 629 ALGAEASTFGGFPESPPPCPLHGGSRGPSTFLPEPP------DTYEEDGGVYFSEGPEP- 681
Query: 245 PLPLCRSPSALRSPP 259
P+A PP
Sbjct: 682 -------PTASVGPP 689
Score = 28.9 bits (63), Expect = 6.1
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 95 PCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVP-LHPRSP 151
P G P APG +P+ + A PG+ AG G P EG + VP P SP
Sbjct: 1046 PSKHGGPS-APGALQPLTSGSAGPAQPGSVAGAG----PGPTEGFTEKNVPESSPHSP 1098
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 41.6 bits (96), Expect = 0.001
Identities = 55/183 (30%), Positives = 62/183 (33%), Gaps = 20/183 (10%)
Query: 95 PCDTGSPGPAPGRCRPI---AARLAA-------RPAPGTAAGRG-GCCEALPAEGTCR-- 141
P G P PAPG C P + R A RPA AA G G A G
Sbjct: 269 PAPPGEP-PAPGTCDPAFYPSQRSGAGPQPRPGRPADKDAASCGPGAAVAAVERGAAGLP 327
Query: 142 RLVPLHPRSPAGESGPGRGGGSCGPAGTAAGGKLRARLLRLPDCSLALGK-ASYSVWSPT 200
+ P S +S P R S A AAG L P + G Y + P
Sbjct: 328 KASPFSVESLLSDSPPRRKAASNAAAAAAAGLDFAPGLPCAPRTLIGKGHFLLYPITQPL 387
Query: 201 HFPVPPLL-----GRLPCVLLEGPARCQRRVETFAAGAGLFVGPGASPSPLPLCRSPSAL 255
F VP G P PA A G F GPG +P RSP A+
Sbjct: 388 GFLVPQAALKGGAGLEPAPKDAPPAPAVPPAPPAQASFGAFSGPGGAPDSAFARRSPDAV 447
Query: 256 RSP 258
SP
Sbjct: 448 ASP 450
Score = 33.1 bits (74), Expect = 0.33
Identities = 27/85 (31%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 90 RSVGGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPR 149
RS G+P PAP R +A+ A G A G A P R P P
Sbjct: 442 RSPDAVASPGAPAPAPAPFRDLASAAATEGGGGDCADAGTAGPAPPPPAPSPRPGP-RPP 500
Query: 150 SPAGESG------PGRGGGSCGPAG 168
SPA E PG G P G
Sbjct: 501 SPAEEPATCGVPEPGAAAGPSPPEG 525
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 41.6 bits (96), Expect = 0.001
Identities = 59/209 (28%), Positives = 74/209 (35%), Gaps = 32/209 (15%)
Query: 83 YRHDLGLRSVGGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAE---GT 139
YR LG + P + + P+ G P + R A R P R E P E G
Sbjct: 77 YRDLLGEEGLQRPREPPAAAPSAGGAAPCSPRGARRGEPPQQQPRRRRREKEPEEEPAGA 136
Query: 140 CRRLVPLHPRSPAGESG---PGRGGGSCG--------PAGTAAGGKLRARLLRLPDCSLA 188
R G PG+GGGS G PA AAG + RA C+ A
Sbjct: 137 AARAADAACNGLPGSDSRRAPGKGGGSKGSPGQRPPVPAAAAAGAQARA------SCAAA 190
Query: 189 --LGKASYSVWSPTHFPVPPLLGRLP--CVLLEGPARCQRRVETFAAGAGLFVGPGASPS 244
G+ + +P LG LP E PAR + A G A P+
Sbjct: 191 KTQGRCCWECLQNNLAVLPGELGALPHSATAEEKPARALPAQDDRGASREREEGALAEPA 250
Query: 245 PLP-LCRSPSAL-------RSPPRRLQRP 265
P+P + SP A SPP L P
Sbjct: 251 PVPAVAHSPPATVEAATSRASPPALLPGP 279
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 41.2 bits (95), Expect = 0.001
Identities = 49/171 (28%), Positives = 69/171 (40%), Gaps = 22/171 (12%)
Query: 99 GSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPG 158
G P G R A A P G AAGRG +PA VP+ P++PAG +GP
Sbjct: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRG-----IPAG------VPM-PQAPAGLAGPV 131
Query: 159 RGGGSCGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFPVPPLLGR-LPCVLLE 217
RG G GP+ + R + + A + + + P PP +GR P +
Sbjct: 132 RGVG--GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMM 189
Query: 218 GPARCQRRVETFAAGAGLFVGPGASPSPLPLCRSPSALRSPPRRLQRPEKP 268
GP R G + + PG P+ P +R PP ++ P P
Sbjct: 190 GPPPGMRP----PMGPPMGIPPGRG---TPMGMPPPGMRPPPPGMRGPPPP 233
>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
Length = 483
Score = 40.8 bits (94), Expect = 0.002
Identities = 53/169 (31%), Positives = 62/169 (36%), Gaps = 44/169 (26%)
Query: 89 LRSVGGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHP 148
L ++ GP TG P PA P AARLA PAP AG PA G P
Sbjct: 261 LDALQGPPRTGGPSPAG----PAAARLAEDPAPHYPAG-------APAPG---------P 300
Query: 149 RSPAGESGPGRGGGS---CGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFPVP 205
AGE PG GG S P + +L L + + + K P P
Sbjct: 301 HPAAGEVPPGPGGPSVIHSPPPPPPPAVLAKPKLWSLAEIATSSDKVKDGGGGNEGSPCP 360
Query: 206 PLLGRLPCVLLEGPARCQRRVETFAAGAGLFVGPGASPSPLPLCRSPSA 254
P G + AG L G ASP+P P RSPSA
Sbjct: 361 PCPGPI-------------------AGQAL-GGSRASPAPAP-SRSPSA 388
Score = 28.9 bits (63), Expect = 6.1
Identities = 35/123 (28%), Positives = 42/123 (34%), Gaps = 19/123 (15%)
Query: 154 ESGPGRGGGSCGPAGTAAGG---KLRARLLRLPDCSLALGKASYSVWSPTHFPVPPLLGR 210
E P + P G AGG K + RL GK + S + F PP GR
Sbjct: 201 EDEPQKPEDKGDPEGPEAGGAEQKAASGCERLQGPPTPAGKETEGSLSDSDFKEPPSEGR 260
Query: 211 LPCVLLEGPARCQRRVETFAAGAGLFVGP-------GASPSPLPLC-------RSPSALR 256
L L+GP R A A L P +P P P PS +
Sbjct: 261 LDA--LQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEVPPGPGGPSVIH 318
Query: 257 SPP 259
SPP
Sbjct: 319 SPP 321
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 40.0 bits (92), Expect = 0.003
Identities = 43/159 (27%), Positives = 56/159 (35%), Gaps = 39/159 (24%)
Query: 135 PAEGTCRRLVPLHPRSPAGESGPGRGGGSCGPAGTAAGGKLRARLLRLPDCSLALGKASY 194
P++ R P A SG G GGG AAG RLL+
Sbjct: 19 PSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGA---GRLLQ------------- 62
Query: 195 SVWSPTHFPVPPLLGRLPCVLLEGPARCQRR--VETFAAGAGLFVGPGASPSPLPLCRSP 252
P+ +P LL G R V AA G GPGA+ P P +P
Sbjct: 63 -----------PIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTP 111
Query: 253 SALRSPPRRLQRPEKPLSQWGEGLGRARRAPRIETRASA 291
A +P + R + GR RR+P R+S+
Sbjct: 112 PAAAAPAEQAPRAK----------GRPRRSPESHRRSSS 140
>gi|13540521 basic helix-loop-helix domain containing, class B, 3
[Homo sapiens]
Length = 482
Score = 40.0 bits (92), Expect = 0.003
Identities = 49/171 (28%), Positives = 66/171 (38%), Gaps = 27/171 (15%)
Query: 103 PAPGRCRPIAARLAARPAPGTAAGRGGCCEALP----AEGTCRRLVPLHPRSPAGES--- 155
P R +P +A LAA T +G GG EA P +G V + P +S
Sbjct: 219 PVIQRTQP-SAELAAENDTDTDSGYGGEAEARPDREKGKGAGASRVTIKQEPPGEDSPAP 277
Query: 156 --------GPGRGGGSCGPAGTAAGGKL------RARLLRLPDCSLALGKASYSVWSPTH 201
G G GGG G A AA L A LLR PD +L ++
Sbjct: 278 KRMKLDSRGGGSGGGPGGGAAAAAAALLGPDPAAAAALLR-PDAALLSSLVAFGGGGGAP 336
Query: 202 FPVPPLLGRLPCV--LLEGPARCQRRVETFAAGAGL--FVGPGASPSPLPL 248
FP P C+ P+ V+ F +GL ++ P A+ +P PL
Sbjct: 337 FPQPAAAAAPFCLPFCFLSPSAAAAYVQPFLDKSGLEKYLYPAAAAAPFPL 387
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 39.7 bits (91), Expect = 0.003
Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 99 GSPGPAPGR------CRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPA 152
G+ PAP R C P+ L RP PGT R C A G R L P P +PA
Sbjct: 89 GTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPR---CPRTLAPGP-RGLFPAPPPAPA 144
Query: 153 GESGPGRGGGSCGPAGTAAGGKLR 176
G+ G G AAG ++R
Sbjct: 145 RTGPAGKAAADRGRPGPAAGRRVR 168
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 38.5 bits (88), Expect = 0.008
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 99 GSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPL---HPRSPAGES 155
G+PGPA R A A P P AG G A+ A+G P P+ GE
Sbjct: 314 GAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEP 373
Query: 156 GPGRGGGSCGPAG 168
GP G+ GPAG
Sbjct: 374 GPPGPAGAAGPAG 386
Score = 35.0 bits (79), Expect = 0.086
Identities = 34/90 (37%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 91 SVGGPCDTGSPGPAPGRCRPIAARLAARPAP----GTAAGRGGCCEALPAEGTCRRLVPL 146
S G P TG PG A P + A P P G G+G E PA G + P
Sbjct: 867 SAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPA-GRPGEVGPP 925
Query: 147 HPRSPAGESG-PGRGG-----GSCGPAGTA 170
P PAGE G PG G G+ GP G A
Sbjct: 926 GPPGPAGEKGSPGADGPAGAPGTPGPQGIA 955
Score = 33.1 bits (74), Expect = 0.33
Identities = 26/83 (31%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 86 DLGLRSVGGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVP 145
D G GP G PGP P A P A G G + G P
Sbjct: 837 DAGPPGPAGPA--GPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP 894
Query: 146 LHPRSPAGESGPGRGGGSCGPAG 168
P PAG+ G G GPAG
Sbjct: 895 PGPPGPAGKEGGKGPRGETGPAG 917
Score = 32.3 bits (72), Expect = 0.55
Identities = 23/76 (30%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 93 GGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPA 152
G P + G+PG R P P P A G G A G P P P
Sbjct: 290 GSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPG------PTGPAGPP 343
Query: 153 GESGPGRGGGSCGPAG 168
G G G GP G
Sbjct: 344 GFPGAVGAKGEAGPQG 359
Score = 32.3 bits (72), Expect = 0.55
Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 91 SVGGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRS 150
S G D G GPA P A P P AG+ G G + P+ R
Sbjct: 1029 SPGAKGDRGETGPAGP---PGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARG 1085
Query: 151 PAGESGPGRGGGSCGPAG 168
PAG GP G G G
Sbjct: 1086 PAGPQGPRGDKGETGEQG 1103
Score = 32.0 bits (71), Expect = 0.72
Identities = 27/80 (33%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 93 GGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPA 152
G D G PGPA P P A G G A G R+ P P A
Sbjct: 833 GAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNA 892
Query: 153 GESGP----GRGGGSCGPAG 168
G GP G+ GG GP G
Sbjct: 893 GPPGPPGPAGKEGGK-GPRG 911
Score = 31.6 bits (70), Expect = 0.95
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 93 GGPCDTGSPGP-----APGRCRPIAARLAARPAPGTAAGRGGC----CEALPAEGTCRRL 143
G D G+PG APG + + A PG RG + P + R L
Sbjct: 707 GAKGDAGAPGAPGSQGAPG-LQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGL 765
Query: 144 V-PLHPRSPAGESGPGRGGGSCGPAG-TAAGG 173
P+ P PAG G G GPAG T A G
Sbjct: 766 TGPIGPPGPAGAPGDKGESGPSGPAGPTGARG 797
Score = 30.8 bits (68), Expect = 1.6
Identities = 53/172 (30%), Positives = 56/172 (32%), Gaps = 39/172 (22%)
Query: 93 GGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPA 152
G P D G PGP P A A P G G A+G P P P
Sbjct: 797 GAPGDRGEPGP------PGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPP 850
Query: 153 GESG----PGRGG--GSCGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFPVPP 206
G G PG G GS GP G A G A + P S G P PP
Sbjct: 851 GPIGNVGAPGAKGARGSAGPPG-ATGFPGAAGRVGPPGPSGNAGP-----------PGPP 898
Query: 207 LLGRLPCVLLEGPARCQ----RRVETFAAGAGLFVGPGASPSPLPLCRSPSA 254
GPA + R ET AG VGP P P SP A
Sbjct: 899 -----------GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGA 939
Score = 30.0 bits (66), Expect = 2.8
Identities = 27/85 (31%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 93 GGPCDTGSPGP--------APGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLV 144
G P + G PGP +PG P A P P AG+ G LP + R
Sbjct: 917 GRPGEVGPPGPPGPAGEKGSPGADGPAGA--PGTPGPQGIAGQRGVV-GLPGQRGERGFP 973
Query: 145 PLH-PRSPAGESGPGRGGGSCGPAG 168
L P G+ GP G GP G
Sbjct: 974 GLPGPSGEPGKQGPSGASGERGPPG 998
Score = 29.6 bits (65), Expect = 3.6
Identities = 28/81 (34%), Positives = 29/81 (35%), Gaps = 15/81 (18%)
Query: 99 GSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESG-- 156
G PGP P A P P A G G A+G P P PAGE G
Sbjct: 581 GFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQG------PPGPAGPAGERGEQ 634
Query: 157 -----PGRGG--GSCGPAGTA 170
PG G G GP G A
Sbjct: 635 GPAGSPGFQGLPGPAGPPGEA 655
Score = 29.3 bits (64), Expect = 4.7
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 88 GLRSVGGPC-DTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPL 146
G+ GP + GSPGPA + P A RP G G + + G + P
Sbjct: 500 GVAGPKGPAGERGSPGPAGPKGSPGEA---GRPGEAGLPGAKGLTGSPGSPGPDGKTGPP 556
Query: 147 HPRSPAGESGPGRGGGSCGPAG 168
P G GP G+ G AG
Sbjct: 557 GPAGQDGRPGPPGPPGARGQAG 578
Score = 28.9 bits (63), Expect = 6.1
Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 97 DTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESG 156
+ G PGPA G P A A PG A G G A G P P+ P G G
Sbjct: 372 EPGPPGPA-GAAGP-AGNPGADGQPG-AKGANGAPGIAGAPGFPGARGPSGPQGPGGPPG 428
Query: 157 PGRGGGSCGPAGT 169
P G G G+
Sbjct: 429 PKGNSGEPGAPGS 441
Score = 28.5 bits (62), Expect = 8.0
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 99 GSPGP--APGRCRPIAARLAARPA--PGTAAGRG-GCCEALPAEGTCRRLVPLHPRSPAG 153
G PGP +PG P A A P PG+A G LP + P PR G
Sbjct: 1118 GPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGP-----IGPPGPRGRTG 1172
Query: 154 ESGPGRGGGSCGPAG 168
++GP G GP G
Sbjct: 1173 DAGPVGPPGPPGPPG 1187
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 38.5 bits (88), Expect = 0.008
Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 86 DLGLRSVGGPC-DTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLV 144
D G GP + G PGP R P AA R A G G AEG +
Sbjct: 1352 DPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAG------AEGPPGKTG 1405
Query: 145 PLHPRSPAGESGPGRGGGSCGPAG 168
P+ P+ PAG+ GP G GP G
Sbjct: 1406 PVGPQGPAGKPGPEGLRGIPGPVG 1429
Score = 30.0 bits (66), Expect = 2.8
Identities = 28/80 (35%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 93 GGPCDTGSPGP--APGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRS 150
G P GSPG + G PI L RP P G G A +G P+
Sbjct: 1063 GPPGPVGSPGERGSAGTAGPIG--LPGRPGPQGPPGPAGEKGAPGEKG---------PQG 1111
Query: 151 PAGESGPGRGGGSCGPAGTA 170
PAG G G GPAG A
Sbjct: 1112 PAGRDGVQGPVGLPGPAGPA 1131
Score = 28.9 bits (63), Expect = 6.1
Identities = 29/83 (34%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 88 GLRSVGGPCDTGSPGP--APGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVP 145
GLR G P + G PG APG + P P + G G G R P
Sbjct: 1036 GLR--GFPGERGLPGAQGAPGLKGGEGPQ--GPPGPVGSPGERGSAGTAGPIGLPGRPGP 1091
Query: 146 LHPRSPAGESGPGRGGGSCGPAG 168
P PAGE G G GPAG
Sbjct: 1092 QGPPGPAGEKGAPGEKGPQGPAG 1114
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 38.5 bits (88), Expect = 0.008
Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 86 DLGLRSVGGPC-DTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLV 144
D G GP + G PGP R P AA R A G G AEG +
Sbjct: 1301 DPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAG------AEGPPGKTG 1354
Query: 145 PLHPRSPAGESGPGRGGGSCGPAG 168
P+ P+ PAG+ GP G GP G
Sbjct: 1355 PVGPQGPAGKPGPEGLRGIPGPVG 1378
Score = 30.0 bits (66), Expect = 2.8
Identities = 28/80 (35%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 93 GGPCDTGSPGP--APGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRS 150
G P GSPG + G PI L RP P G G A +G P+
Sbjct: 1012 GPPGPVGSPGERGSAGTAGPIG--LPGRPGPQGPPGPAGEKGAPGEKG---------PQG 1060
Query: 151 PAGESGPGRGGGSCGPAGTA 170
PAG G G GPAG A
Sbjct: 1061 PAGRDGVQGPVGLPGPAGPA 1080
Score = 28.9 bits (63), Expect = 6.1
Identities = 29/83 (34%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 88 GLRSVGGPCDTGSPGP--APGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVP 145
GLR G P + G PG APG + P P + G G G R P
Sbjct: 985 GLR--GFPGERGLPGAQGAPGLKGGEGPQ--GPPGPVGSPGERGSAGTAGPIGLPGRPGP 1040
Query: 146 LHPRSPAGESGPGRGGGSCGPAG 168
P PAGE G G GPAG
Sbjct: 1041 QGPPGPAGEKGAPGEKGPQGPAG 1063
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 38.5 bits (88), Expect = 0.008
Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 86 DLGLRSVGGPC-DTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLV 144
D G GP + G PGP R P AA R A G G AEG +
Sbjct: 1340 DPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAG------AEGPPGKTG 1393
Query: 145 PLHPRSPAGESGPGRGGGSCGPAG 168
P+ P+ PAG+ GP G GP G
Sbjct: 1394 PVGPQGPAGKPGPEGLRGIPGPVG 1417
Score = 30.0 bits (66), Expect = 2.8
Identities = 28/80 (35%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 93 GGPCDTGSPGP--APGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRS 150
G P GSPG + G PI L RP P G G A +G P+
Sbjct: 1051 GPPGPVGSPGERGSAGTAGPIG--LPGRPGPQGPPGPAGEKGAPGEKG---------PQG 1099
Query: 151 PAGESGPGRGGGSCGPAGTA 170
PAG G G GPAG A
Sbjct: 1100 PAGRDGVQGPVGLPGPAGPA 1119
Score = 28.9 bits (63), Expect = 6.1
Identities = 29/83 (34%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 88 GLRSVGGPCDTGSPGP--APGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVP 145
GLR G P + G PG APG + P P + G G G R P
Sbjct: 1024 GLR--GFPGERGLPGAQGAPGLKGGEGPQ--GPPGPVGSPGERGSAGTAGPIGLPGRPGP 1079
Query: 146 LHPRSPAGESGPGRGGGSCGPAG 168
P PAGE G G GPAG
Sbjct: 1080 QGPPGPAGEKGAPGEKGPQGPAG 1102
>gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Homo
sapiens]
Length = 299
Score = 38.5 bits (88), Expect = 0.008
Identities = 48/155 (30%), Positives = 56/155 (36%), Gaps = 30/155 (19%)
Query: 160 GGGSCGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFPV---------PPLLGR 210
GG C A A R + LR + LG+A+ PP L
Sbjct: 22 GGNRCVDAAEACTADARCQRLRSEYVAQCLGRAAQGGCPRARCRRALRRFFARGPPALTH 81
Query: 211 L----PCVLLEGPARCQRRVETFAAGAGLFVGPGASPSPLPLCRSPSAL--RSPPRRLQR 264
PC GPA +RR +TF F GPG +P P C P RS R R
Sbjct: 82 ALLFCPCA---GPACAERRRQTFVPSCA-FSGPGPAP---PSCLEPLNFCERSRVCRCAR 134
Query: 265 PEK-PLSQWGEGLGRARRAPRIETRASAATAAPLG 298
P WG GL A R P AA A+P G
Sbjct: 135 AAAGPWRGWGRGLSPAHRPP-------AAQASPPG 162
>gi|194272161 1D-myo-inositol-trisphosphate 3-kinase B [Homo
sapiens]
Length = 946
Score = 38.1 bits (87), Expect = 0.010
Identities = 59/209 (28%), Positives = 74/209 (35%), Gaps = 44/209 (21%)
Query: 89 LRSVGGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHP 148
++S GGP +GS P P R R P + GRG PAE L P P
Sbjct: 20 MKSGGGPGPSGSETPPPPR------RAVLSPGSVFSPGRGASFLFPPAES----LSPEEP 69
Query: 149 RSPAG--------ESGPGRGGGSCGPAGTAA--GGKLR--------ARLLRLPDCSLALG 190
RSP G S G G GS G + ++ G+LR A L P A
Sbjct: 70 RSPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKR 129
Query: 191 KASYSVWSPTHFPVPPLLGRLPCVLLEGPARCQRRVETFAAGAGLFVGPGASPSPLPLCR 250
K + V +G A Q + A +G SPSP P R
Sbjct: 130 KLRILQRELQNVQVNQKVGMF-------EAHIQAQSSAIQAPRSPRLGRARSPSPCPF-R 181
Query: 251 SPSALRSPPRRL-----QRPEKPLSQWGE 274
S S PP R+ + E+ WGE
Sbjct: 182 SSS---QPPGRVLVQGARSEERRTKSWGE 207
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 37.7 bits (86), Expect = 0.013
Identities = 48/169 (28%), Positives = 56/169 (33%), Gaps = 26/169 (15%)
Query: 101 PGPAPGRCRPIAARLAARPAPGTAAGRGGCCE--ALPAE-----------GTCRRLVPLH 147
P P RC P R P+ +AGR G A P E G RL H
Sbjct: 287 PARLPTRCLPSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPH 346
Query: 148 --PRSPAGESGPGRGGGSCGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFPVP 205
P P +G G GGG G G+ R R R A +P P+P
Sbjct: 347 SLPPPPPFRTGRGEGGGG-GSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAP---PLP 402
Query: 206 PLLGRLPCVLLEGPARCQRRVE-------TFAAGAGLFVGPGASPSPLP 247
L C L G R+E G G V A P+PLP
Sbjct: 403 CLPPAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLP 451
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 37.7 bits (86), Expect = 0.013
Identities = 48/169 (28%), Positives = 56/169 (33%), Gaps = 26/169 (15%)
Query: 101 PGPAPGRCRPIAARLAARPAPGTAAGRGGCCE--ALPAE-----------GTCRRLVPLH 147
P P RC P R P+ +AGR G A P E G RL H
Sbjct: 287 PARLPTRCLPSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPH 346
Query: 148 --PRSPAGESGPGRGGGSCGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFPVP 205
P P +G G GGG G G+ R R R A +P P+P
Sbjct: 347 SLPPPPPFRTGRGEGGGG-GSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAP---PLP 402
Query: 206 PLLGRLPCVLLEGPARCQRRVE-------TFAAGAGLFVGPGASPSPLP 247
L C L G R+E G G V A P+PLP
Sbjct: 403 CLPPAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLP 451
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 37.7 bits (86), Expect = 0.013
Identities = 47/162 (29%), Positives = 65/162 (40%), Gaps = 22/162 (13%)
Query: 99 GSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPG 158
G P G R A A P G AAGRG +PA VP+ P++PAG +GP
Sbjct: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRG-----IPAG------VPM-PQAPAGLAGPV 131
Query: 159 RGGGSCGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFPVPPLLGR-LPCVLLE 217
RG G GP+ + R + + A + + + P PP +GR P +
Sbjct: 132 RGVG--GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMM 189
Query: 218 GPARCQRRVETFAAGAGLFVGPGASPSPLPLCRSPSALRSPP 259
GP R G + + PG P+ P +R PP
Sbjct: 190 GPPPGMRP----PMGPPMGIPPGRG---TPMGMPPPGMRPPP 224
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.7 bits (86), Expect = 0.013
Identities = 50/181 (27%), Positives = 71/181 (39%), Gaps = 42/181 (23%)
Query: 99 GSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPG 158
G P G R A A P G AAGRG +PA VP+ P++PAG +GP
Sbjct: 84 GPPPKDTGIARVPLAGAAGGPGVGRAAGRG-----VPAG------VPI-PQAPAGLAGPV 131
Query: 159 RGGGSCGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFP-----VPPLLGRL-- 211
RG G GP+ + R + + A+ + +PT +P PP +GR
Sbjct: 132 RGVG--GPSQQVMTPQGRGTV-----AAAAVAATASIAGAPTQYPPGRGTPPPPVGRATP 184
Query: 212 -PCVLLEGPARCQRRVETFAAGAGLFVGPGASPSP---LPLCRSPSALRSPPRRLQRPEK 267
P ++ P G +GP P P+ P +R PP ++ P
Sbjct: 185 PPGIMAPPP------------GMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPP 232
Query: 268 P 268
P
Sbjct: 233 P 233
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.7 bits (86), Expect = 0.013
Identities = 50/181 (27%), Positives = 71/181 (39%), Gaps = 42/181 (23%)
Query: 99 GSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPG 158
G P G R A A P G AAGRG +PA VP+ P++PAG +GP
Sbjct: 84 GPPPKDTGIARVPLAGAAGGPGVGRAAGRG-----VPAG------VPI-PQAPAGLAGPV 131
Query: 159 RGGGSCGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFP-----VPPLLGRL-- 211
RG G GP+ + R + + A+ + +PT +P PP +GR
Sbjct: 132 RGVG--GPSQQVMTPQGRGTV-----AAAAVAATASIAGAPTQYPPGRGTPPPPVGRATP 184
Query: 212 -PCVLLEGPARCQRRVETFAAGAGLFVGPGASPSP---LPLCRSPSALRSPPRRLQRPEK 267
P ++ P G +GP P P+ P +R PP ++ P
Sbjct: 185 PPGIMAPPP------------GMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPP 232
Query: 268 P 268
P
Sbjct: 233 P 233
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.7 bits (86), Expect = 0.013
Identities = 50/181 (27%), Positives = 71/181 (39%), Gaps = 42/181 (23%)
Query: 99 GSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPG 158
G P G R A A P G AAGRG +PA VP+ P++PAG +GP
Sbjct: 84 GPPPKDTGIARVPLAGAAGGPGVGRAAGRG-----VPAG------VPI-PQAPAGLAGPV 131
Query: 159 RGGGSCGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFP-----VPPLLGRL-- 211
RG G GP+ + R + + A+ + +PT +P PP +GR
Sbjct: 132 RGVG--GPSQQVMTPQGRGTV-----AAAAVAATASIAGAPTQYPPGRGTPPPPVGRATP 184
Query: 212 -PCVLLEGPARCQRRVETFAAGAGLFVGPGASPSP---LPLCRSPSALRSPPRRLQRPEK 267
P ++ P G +GP P P+ P +R PP ++ P
Sbjct: 185 PPGIMAPPP------------GMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPP 232
Query: 268 P 268
P
Sbjct: 233 P 233
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.7 bits (86), Expect = 0.013
Identities = 50/181 (27%), Positives = 71/181 (39%), Gaps = 42/181 (23%)
Query: 99 GSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPG 158
G P G R A A P G AAGRG +PA VP+ P++PAG +GP
Sbjct: 84 GPPPKDTGIARVPLAGAAGGPGVGRAAGRG-----VPAG------VPI-PQAPAGLAGPV 131
Query: 159 RGGGSCGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFP-----VPPLLGRL-- 211
RG G GP+ + R + + A+ + +PT +P PP +GR
Sbjct: 132 RGVG--GPSQQVMTPQGRGTV-----AAAAVAATASIAGAPTQYPPGRGTPPPPVGRATP 184
Query: 212 -PCVLLEGPARCQRRVETFAAGAGLFVGPGASPSP---LPLCRSPSALRSPPRRLQRPEK 267
P ++ P G +GP P P+ P +R PP ++ P
Sbjct: 185 PPGIMAPPP------------GMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPP 232
Query: 268 P 268
P
Sbjct: 233 P 233
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 37.7 bits (86), Expect = 0.013
Identities = 50/181 (27%), Positives = 71/181 (39%), Gaps = 42/181 (23%)
Query: 99 GSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPG 158
G P G R A A P G AAGRG +PA VP+ P++PAG +GP
Sbjct: 84 GPPPKDTGIARVPLAGAAGGPGVGRAAGRG-----VPAG------VPI-PQAPAGLAGPV 131
Query: 159 RGGGSCGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFP-----VPPLLGRL-- 211
RG G GP+ + R + + A+ + +PT +P PP +GR
Sbjct: 132 RGVG--GPSQQVMTPQGRGTV-----AAAAVAATASIAGAPTQYPPGRGTPPPPVGRATP 184
Query: 212 -PCVLLEGPARCQRRVETFAAGAGLFVGPGASPSP---LPLCRSPSALRSPPRRLQRPEK 267
P ++ P G +GP P P+ P +R PP ++ P
Sbjct: 185 PPGIMAPPP------------GMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPP 232
Query: 268 P 268
P
Sbjct: 233 P 233
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 37.4 bits (85), Expect = 0.017
Identities = 37/123 (30%), Positives = 46/123 (37%), Gaps = 17/123 (13%)
Query: 90 RSVGGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPR 149
R G P GSP PAP RPAPG ++ A P +R R
Sbjct: 105 RPGGFPLAWGSPQPAP------------RPAPGRSSALALAGGAAPGVARAQRPGGSGGR 152
Query: 150 SPAGESGPGRGGGSCGPAG---TAAGGKLRARLLRLPDCSLALGKASYSVWSP--THFPV 204
S G G RGGG+ GP AA G R +R + A ++ P +H
Sbjct: 153 SHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGT 212
Query: 205 PPL 207
P L
Sbjct: 213 PAL 215
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 37.4 bits (85), Expect = 0.017
Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 12/127 (9%)
Query: 148 PRSPAGESGPGRGGGSCGPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFPVPP- 206
P AG SG GGG GP G G+ R P ++ P P+PP
Sbjct: 1401 PGGKAGSSGSSSGGGGGGPGGRTGPGRGDKRSWPSPK-----NRSRPPEERPPGLPLPPP 1455
Query: 207 -----LLGRLPCVLLEGPARCQRRVETFAAGAGLFVGPGASPSPLP-LCRSPSALRSPPR 260
+ RL V+ PA Q+ + ++ G PG P P L ++P P
Sbjct: 1456 PPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPGLPQAPQGPSPRPP 1515
Query: 261 RLQRPEK 267
P++
Sbjct: 1516 TRYEPQR 1522
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 37.0 bits (84), Expect = 0.023
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 88 GLRSVGGPCD-TGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRR---L 143
G R GGP TG PG A P + ++ P P AG+ G +G R +
Sbjct: 775 GSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEV 834
Query: 144 VPLHPRSPAGESGPGRGGGSCGPAGT 169
+ P AGE GP G+ GP GT
Sbjct: 835 GAVGPPGFAGEKGPSGEAGTAGPPGT 860
Score = 35.4 bits (80), Expect = 0.066
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 86 DLGLRSVGGPCDTGSPGPAPGRCRPIA-ARLAARPAPGTAAGRGGCCEALPAEGTCRRLV 144
D G GP P +PG + A P AAG+ G A+G
Sbjct: 692 DRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENG 751
Query: 145 PLHPRSPAGESGPGRGGGSCGPAGTAAGG 173
+ P P G +GP G GPAG+ G
Sbjct: 752 VVGPTGPVGAAGPAGPNGPPGPAGSRGDG 780
Score = 34.7 bits (78), Expect = 0.11
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 93 GGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPA 152
G P G PG APG + AR PG GR G A G+ + P+ P P
Sbjct: 193 GAPGVKGEPG-APGE-NGTPGQTGARGLPG-ERGRVGAPGPAGARGSDGSVGPVGPAGPI 249
Query: 153 GESGPGRGGGSCGPAG 168
G +GP G+ GP G
Sbjct: 250 GSAGPPGFPGAPGPKG 265
Score = 33.9 bits (76), Expect = 0.19
Identities = 32/93 (34%), Positives = 38/93 (40%), Gaps = 18/93 (19%)
Query: 87 LGLRSVGGPC----DTGSPGPAPGRCRP-IAARLAARPAPGTAAGRGGCCEALPAEGTCR 141
+G R GP D G PG R P + + PG A G +G
Sbjct: 993 VGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGD-------QGAPG 1045
Query: 142 RLVPLHPRSPAGESGP----GRGG--GSCGPAG 168
+ P PR PAG SGP GR G G+ GPAG
Sbjct: 1046 SVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAG 1078
Score = 33.1 bits (74), Expect = 0.33
Identities = 30/84 (35%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 93 GGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSP- 151
GG + G PG P R AR APG A G G A G P P P
Sbjct: 652 GGKGEKGEPGLRGEIGNP--GRDGARGAPG-AVGAPGPAGATGDRGEAGAAGPAGPAGPR 708
Query: 152 -----AGESGPGRGGGSCGPAGTA 170
GE GP G GPAG A
Sbjct: 709 GSPGERGEVGPAGPNGFAGPAGAA 732
Score = 32.7 bits (73), Expect = 0.42
Identities = 28/88 (31%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 88 GLRSVGG----PCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRL 143
GL V G P G PGP A L P P + G G +G
Sbjct: 313 GLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESG------NKGEPGSA 366
Query: 144 VPLHPRSPAGESG---PGRGGGSCGPAG 168
P P P+GE G P GS GP G
Sbjct: 367 GPQGPPGPSGEEGKRGPNGEAGSAGPPG 394
Score = 30.8 bits (68), Expect = 1.6
Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 93 GGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEAL-PAEGTCRRLVPLHPRSP 151
G P + G+PG R P P P A G G + PA P P +P
Sbjct: 202 GAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAP 261
Query: 152 A--GESGPGRGGGSCGPAG 168
GE G G GPAG
Sbjct: 262 GPKGEIGAVGNAGPAGPAG 280
Score = 29.3 bits (64), Expect = 4.7
Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 93 GGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLH-PRSP 151
GG + G PGP PG P P AG G P E L P P
Sbjct: 541 GGKGEQGPPGP-PG--------FQGLPGPSGPAGEVG----KPGERGLHGEFGLPGPAGP 587
Query: 152 AGESGPGRGGGSCGPAG 168
GE GP G+ GP G
Sbjct: 588 RGERGPPGESGAAGPTG 604
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 37.0 bits (84), Expect = 0.023
Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 93 GGPCDTGSPGPA--PGRCRPIAARLAARPA-PGTAAGRGGCCEALPAEGTCRRLVPLHPR 149
G P TGSPGP PG P R PA P G G EG + P+ P+
Sbjct: 1369 GEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQ 1428
Query: 150 SPAGESGPGRGGGSCGPAG 168
G+ GP G GP G
Sbjct: 1429 GAPGKPGPDGLRGIPGPVG 1447
Score = 34.7 bits (78), Expect = 0.11
Identities = 29/81 (35%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 88 GLRSVGGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLH 147
GLR G P D G PGP P P + G G A G R P
Sbjct: 1054 GLR--GFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQG 1111
Query: 148 PRSPAGESGPGRGGGSCGPAG 168
P PAGE G G GPAG
Sbjct: 1112 PPGPAGEKGAPGEKGPQGPAG 1132
Score = 32.0 bits (71), Expect = 0.72
Identities = 31/88 (35%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 87 LGLRSVGGPCDTGSPGPA--PGRCRPIAAR----LAARPAPGTAAGRGGCCEALPAEGTC 140
LGL+ GP G PGPA PG P A + RP P G G A +G
Sbjct: 1071 LGLKGNEGP--PGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKG-- 1126
Query: 141 RRLVPLHPRSPAGESGPGRGGGSCGPAG 168
P+ PAG G G GPAG
Sbjct: 1127 -------PQGPAGRDGLQGPVGLPGPAG 1147
Score = 30.4 bits (67), Expect = 2.1
Identities = 27/76 (35%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 93 GGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPA 152
G P G GP G P A + + PG A G LP EG P R
Sbjct: 1261 GAPGADGPQGPPGGIGNPGA--VGEKGEPGEAGEPG-----LPGEGGPPG--PKGERGEK 1311
Query: 153 GESGPGRGGGSCGPAG 168
GESGP G GP G
Sbjct: 1312 GESGPSGAAGPPGPKG 1327
Score = 29.6 bits (65), Expect = 3.6
Identities = 32/88 (36%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 88 GLRSVGGPCDTGSPGPA--PGRCRPIAARLAARPAPGTAAGRGGC----CEALPAE-GTC 140
G R V GP PGPA PGR R A AR PG +G LP E G
Sbjct: 592 GPRGVQGP-----PGPAGKPGR-RGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHR 645
Query: 141 RRLVPLHPRSPAGESGPGRGGGSCGPAG 168
P P P G+ G G GP G
Sbjct: 646 GDPGPSGPPGPPGDDGERGDDGEVGPRG 673
Score = 29.3 bits (64), Expect = 4.7
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 93 GGPCDTGSPGPAPGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPA 152
G P G+PG + P A P G G G G P P+ P
Sbjct: 1270 GPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPP 1329
Query: 153 GESGPGRGGGSCGPAG 168
G+ GP GS GP G
Sbjct: 1330 GDDGP---KGSPGPVG 1342
>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 445
Score = 37.0 bits (84), Expect = 0.023
Identities = 52/159 (32%), Positives = 63/159 (39%), Gaps = 34/159 (21%)
Query: 105 PGRCRPIAARLAARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPGRGGGSC 164
PG RP + AR AG+G A P R + P++P G SGP GG
Sbjct: 154 PGSLRPTSLGFPAR------AGQGQVQGAAPG-----RRLRGEPKTPPGRSGPS-GGVRS 201
Query: 165 GPAGTAAGGKLRARLLRLPDCSLALGKASYSVWSPTHFPVPPLLGRLPCVLLEGPARCQR 224
G AA + + LG A +SV + P PP RLP P R R
Sbjct: 202 GAGHRAATAEHQ------------LG-AGFSV---RNGPGPP--ARLPPAPPGPPLRPAR 243
Query: 225 RVETFAAGAG--LFVGPGAS--PSPLPLCRSPSALRSPP 259
+ G G L P + P PLPLCRS L PP
Sbjct: 244 PHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPP 282
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,377,264
Number of Sequences: 37866
Number of extensions: 1041234
Number of successful extensions: 8152
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 467
Number of HSP's that attempted gapping in prelim test: 6851
Number of HSP's gapped (non-prelim): 1506
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.