Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169206171
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
(466 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 966 0.0
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 715 0.0
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 715 0.0
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 64 3e-10
gi|153792074 proline rich 12 [Homo sapiens] 62 1e-09
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 58 2e-08
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 57 3e-08
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 57 3e-08
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 57 4e-08
gi|48762934 alpha 2 type I collagen [Homo sapiens] 56 8e-08
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 55 2e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 54 2e-07
gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo ... 54 4e-07
gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo ... 54 4e-07
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 53 7e-07
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 52 9e-07
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 52 9e-07
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 52 9e-07
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 52 9e-07
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 52 1e-06
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 52 1e-06
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 52 1e-06
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 52 1e-06
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 52 1e-06
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 52 1e-06
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 50 4e-06
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 50 4e-06
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 50 6e-06
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 50 6e-06
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 50 6e-06
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 966 bits (2496), Expect = 0.0
Identities = 466/466 (100%), Positives = 466/466 (100%)
Query: 1 MEGKEKSFHHRGGTATVNVLPSLGEKALTALSHQNPEFPQIARNDCWDRVPRGSVTDSNH 60
MEGKEKSFHHRGGTATVNVLPSLGEKALTALSHQNPEFPQIARNDCWDRVPRGSVTDSNH
Sbjct: 1 MEGKEKSFHHRGGTATVNVLPSLGEKALTALSHQNPEFPQIARNDCWDRVPRGSVTDSNH 60
Query: 61 TPAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDC 120
TPAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDC
Sbjct: 61 TPAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDC 120
Query: 121 AGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARR 180
AGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARR
Sbjct: 121 AGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARR 180
Query: 181 KTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRAC 240
KTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRAC
Sbjct: 181 KTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRAC 240
Query: 241 PGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSA 300
PGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSA
Sbjct: 241 PGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSA 300
Query: 301 PPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLS 360
PPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLS
Sbjct: 301 PPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLS 360
Query: 361 SPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGG 420
SPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGG
Sbjct: 361 SPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGG 420
Query: 421 GSQPFAGRRAERGKRGAGVPWRTQTLSLLRRCSGALRELESPFPDS 466
GSQPFAGRRAERGKRGAGVPWRTQTLSLLRRCSGALRELESPFPDS
Sbjct: 421 GSQPFAGRRAERGKRGAGVPWRTQTLSLLRRCSGALRELESPFPDS 466
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 715 bits (1846), Expect = 0.0
Identities = 397/567 (70%), Positives = 408/567 (71%), Gaps = 104/567 (18%)
Query: 1 MEGKEKSFHHRGGTATVNVLPSLGEKALTALSHQNPEFPQIARNDCWDRVPRGSVTDSNH 60
MEGKEKSFHHRGGTATVNVLPSLGEKALTALSHQNPEFPQIARNDCWDRVPRGSVTDSNH
Sbjct: 1 MEGKEKSFHHRGGTATVNVLPSLGEKALTALSHQNPEFPQIARNDCWDRVPRGSVTDSNH 60
Query: 61 TPAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDC 120
TPAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDC
Sbjct: 61 TPAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDC 120
Query: 121 AGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARR 180
AGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGR SHSGPRAGTPGGGRSSRAGARR
Sbjct: 121 AGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRGSHSGPRAGTPGGGRSSRAGARR 180
Query: 181 KTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRAC 240
KTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRAC
Sbjct: 181 KTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRAC 240
Query: 241 PGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHST-GARTLPTPSRAR------PGK 293
PGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHST G R PT R+ P K
Sbjct: 241 PGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTSGGR--PTGERSSREPLLDPSK 298
Query: 294 PAPRGSAPPARL-------------RGGGGGSGLTQLVG---------------SGR--- 322
A + P AR+ R GGG T L G SGR
Sbjct: 299 AARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALE 358
Query: 323 ---------------GSGVTHSVGTHALATRRGSRAPR---PVGVLR------------- 351
GS ++ T + A R G APR P LR
Sbjct: 359 PAQGSELWARAERHGGSSGARTLPTPSRA-RPGKPAPRGSAPPARLRGGGGGSGLTQLVG 417
Query: 352 -----GVPHFRPLSSPAPQSPPRSP-------SVRAFGPRLGAGRLSCPQAP-------- 391
GV H + A + R+P V F P S P++P
Sbjct: 418 SGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPR 477
Query: 392 ------------RAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGV 439
RAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGV
Sbjct: 478 LGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGV 537
Query: 440 PWRTQTLSLLRRCSGALRELESPFPDS 466
PWRTQTLSLLRRCSGALRELESPFPDS
Sbjct: 538 PWRTQTLSLLRRCSGALRELESPFPDS 564
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 715 bits (1846), Expect = 0.0
Identities = 397/567 (70%), Positives = 408/567 (71%), Gaps = 104/567 (18%)
Query: 1 MEGKEKSFHHRGGTATVNVLPSLGEKALTALSHQNPEFPQIARNDCWDRVPRGSVTDSNH 60
MEGKEKSFHHRGGTATVNVLPSLGEKALTALSHQNPEFPQIARNDCWDRVPRGSVTDSNH
Sbjct: 1 MEGKEKSFHHRGGTATVNVLPSLGEKALTALSHQNPEFPQIARNDCWDRVPRGSVTDSNH 60
Query: 61 TPAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDC 120
TPAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDC
Sbjct: 61 TPAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDC 120
Query: 121 AGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARR 180
AGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGR SHSGPRAGTPGGGRSSRAGARR
Sbjct: 121 AGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRGSHSGPRAGTPGGGRSSRAGARR 180
Query: 181 KTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRAC 240
KTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRAC
Sbjct: 181 KTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRAC 240
Query: 241 PGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHST-GARTLPTPSRAR------PGK 293
PGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHST G R PT R+ P K
Sbjct: 241 PGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTSGGR--PTGERSSREPLLDPSK 298
Query: 294 PAPRGSAPPARL-------------RGGGGGSGLTQLVG---------------SGR--- 322
A + P AR+ R GGG T L G SGR
Sbjct: 299 AARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALE 358
Query: 323 ---------------GSGVTHSVGTHALATRRGSRAPR---PVGVLR------------- 351
GS ++ T + A R G APR P LR
Sbjct: 359 PAQGSELWARAERHGGSSGARTLPTPSRA-RPGKPAPRGSAPPARLRGGGGGSGLTQLVG 417
Query: 352 -----GVPHFRPLSSPAPQSPPRSP-------SVRAFGPRLGAGRLSCPQAP-------- 391
GV H + A + R+P V F P S P++P
Sbjct: 418 SGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPR 477
Query: 392 ------------RAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGV 439
RAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGV
Sbjct: 478 LGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGV 537
Query: 440 PWRTQTLSLLRRCSGALRELESPFPDS 466
PWRTQTLSLLRRCSGALRELESPFPDS
Sbjct: 538 PWRTQTLSLLRRCSGALRELESPFPDS 564
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 63.9 bits (154), Expect = 3e-10
Identities = 107/405 (26%), Positives = 135/405 (33%), Gaps = 45/405 (11%)
Query: 68 GPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSR--ARTALWGRRSRRA-----AGPGLDC 120
GP P+G + P AGE GP+ R + R + G R GPG D
Sbjct: 492 GPAGPNGIPGEKGP--AGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSD- 548
Query: 121 AGSAPAPSGAQSCGG----PAPASALRRPLTQW--DASGGGGRASHSGPRAGTPGGGRSS 174
P P G+Q G P P+ +P G G +G R G G G
Sbjct: 549 --GKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQG 606
Query: 175 RAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWG-----GSGTPPPPRALWNRHG--GAAG 227
G +T P G + G G G+G PP G G AG
Sbjct: 607 PPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAG 666
Query: 228 ARAQVRGSEKRACPGSTLPPSSVLAGCVGTRA-RGHGGVQRQRFSAPSSHSTGARTLPTP 286
A G PG PP LAG G R G G + + +A GA P
Sbjct: 667 APGAPGGKGDAGAPGERGPPG--LAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPG- 723
Query: 287 SRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSR---- 342
+ PG+ GS P +G GG G + G G T +G A + G +
Sbjct: 724 LQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGG 783
Query: 343 APRPVGVL--RGVPHFR-PLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGI 399
AP G+ RG P R P P P +P G G G P PG+
Sbjct: 784 APGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQN--GEPGGKGERGAPGEKGEGGPPGV 841
Query: 400 A-------VLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGA 437
A P G+R G G+ F G R G G+
Sbjct: 842 AGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGS 886
Score = 52.4 bits (124), Expect = 9e-07
Identities = 103/399 (25%), Positives = 131/399 (32%), Gaps = 53/399 (13%)
Query: 68 GPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAP 127
GP P G+ P + G + G + R AR + + PG P
Sbjct: 297 GPMGPRGA-----PGERGRPGLPGAAGARGNDGARGS-----DGQPGPPGPPGTAGFPGS 346
Query: 128 SGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRA-----GTPGG-GRSSRAGARRK 181
GA+ GPA + Q G G A GP G+PGG G AG
Sbjct: 347 PGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGA 406
Query: 182 TPLSLCPLKLRKGSSRRCQGLGSSWGGSGTP--------PPPRALWNRHG--GAAGARAQ 231
L + GL GG+G P P PR G G GA+ +
Sbjct: 407 PGLMGARGPPGPAGANGAPGLR---GGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGE 463
Query: 232 VRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARP 291
K PG P ++ L G G R G R A + G + P R P
Sbjct: 464 ---DGKDGSPGE--PGANGLPGAAGER-----GAPGFRGPAGPNGIPGEKG-PAGERGAP 512
Query: 292 GKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLR 351
G PRG+A G GG G+ + GS G G G G P R
Sbjct: 513 GPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPR 572
Query: 352 GVPHFRPLSSPAPQSPPRSPSVRAF-------GPRLGAGR--LSCPQAPRAAALPGIAVL 402
G P + P P+ +P GP+ G+ + PQ P PG
Sbjct: 573 GQPGV--MGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKG 630
Query: 403 APSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRG-AGVP 440
P G Q G GG G+ E G +G AG P
Sbjct: 631 DTGPPGPQGLQGLPGTGGPPGE-NGKPGEPGPKGDAGAP 668
Score = 52.4 bits (124), Expect = 9e-07
Identities = 94/342 (27%), Positives = 113/342 (33%), Gaps = 56/342 (16%)
Query: 116 PGLD-CAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSS 174
PGL AG +P G P PA P + G G R + G P G
Sbjct: 785 PGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGP 844
Query: 175 RAGARRKTPLSLCPLKLRKGSSRR--------CQGLGSSWGGSGTPPPPRALWNRHGGAA 226
G+ P +K +GS +GL G +G P PP G+
Sbjct: 845 PGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGP-----SGSP 899
Query: 227 GARAQVRGSEKRACPGSTLPPSSVLAGCVGTRA-RGHGGVQRQRFSAPS----SHSTGAR 281
G + PGS P S G G +G G Q AP + TGAR
Sbjct: 900 GKDGPPGPAGNTGAPGS--PGVSGPKGDAGQPGEKGSPGAQGPP-GAPGPLGIAGITGAR 956
Query: 282 TLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGS 341
L P PG P PRGS P ++G G G + L+ RG
Sbjct: 957 GLAGP----PGMPGPRGSPGPQGVKGESG------------------KPGANGLSGERGP 994
Query: 342 RAPRPVGVLRGVPHFRPLSSPAPQS---PPRSPSVRAFGPRLGAGRLSCPQAPRAAALPG 398
P+ + L G P P S P R S G R G P AP A PG
Sbjct: 995 PGPQGLPGLAGTAG-EPGRDGNPGSDGLPGRDGSPGGKGDR---GENGSPGAPGAPGHPG 1050
Query: 399 IAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGVP 440
P P G G G + P AG G RGA P
Sbjct: 1051 ----PPGPVGPAGKSGDRGESGPAGP-AGAPGPAGSRGAPGP 1087
Score = 49.3 bits (116), Expect = 7e-06
Identities = 107/421 (25%), Positives = 137/421 (32%), Gaps = 49/421 (11%)
Query: 51 PRGSVTDSNHT----PAGLDCGPTR---PSGSLTTRRPRDAGEAAV---------SGPSR 94
PRGS + T PAG P + P G P + GE SGP+
Sbjct: 793 PRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAG 852
Query: 95 QRRTSRARTALWGRRSRRAAG-PGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASG 153
+ AAG PG P +G GP+ + P +G
Sbjct: 853 PPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTG 912
Query: 154 GGGRASHSGPR--AGTPG--GGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGS 209
G SGP+ AG PG G ++ PL + + +R G G
Sbjct: 913 APGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGIT----GARGLAGPPGMPGPR 968
Query: 210 GTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRAR----GHGGV 265
G+P P G GA S +R PG P LAG G R G G+
Sbjct: 969 GSPGPQGV--KGESGKPGANGL---SGERGPPGPQGLPG--LAGTAGEPGRDGNPGSDGL 1021
Query: 266 QRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSG 325
+ S G P A PG P P G PA G G SG G+ +G
Sbjct: 1022 PGRDGSPGGKGDRGENGSPGAPGA-PGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAG 1080
Query: 326 VTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAF------GPR 379
+ G +G R ++G F P + AP SP + A GPR
Sbjct: 1081 SRGAPGPQGPRGDKGETGERGAAGIKGHRGF-PGNPGAPGSPGPAGQQGAIGSPGPAGPR 1139
Query: 380 LGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGV 439
G P + PG + P P G R E GS G+ G GA
Sbjct: 1140 GPVGPSGPPGKDGTSGHPG-PIGPPGPR----GNRGERGSEGSPGHPGQPGPPGPPGAPG 1194
Query: 440 P 440
P
Sbjct: 1195 P 1195
Score = 47.0 bits (110), Expect = 4e-05
Identities = 108/419 (25%), Positives = 129/419 (30%), Gaps = 94/419 (22%)
Query: 68 GPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAP 127
GP P+G+ T P G VSGP G+ + + PG AP P
Sbjct: 903 GPPGPAGN--TGAP---GSPGVSGPKGDA----------GQPGEKGS-PGAQGPPGAPGP 946
Query: 128 SGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGG----GRSSRAGARRKTP 183
G G A G G GPR G+PG G S + GA
Sbjct: 947 LGIAGITG---------------ARGLAGPPGMPGPR-GSPGPQGVKGESGKPGANG--- 987
Query: 184 LSLCPLKLRKGSSRRCQGLGSSWGGSGTP-----PPPRALWNRHG--GAAGARAQVRGSE 236
L +G QGL G +G P P L R G G G R +
Sbjct: 988 -----LSGERGPPGP-QGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPG 1041
Query: 237 KRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAP 296
PG PP V G G R + + GA P SR PG P
Sbjct: 1042 APGAPGHPGPPGPV----------GPAGKSGDRGESGPAGPAGAPG-PAGSRGAPGPQGP 1090
Query: 297 RGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPR-PVGVLRGVPH 355
RG RG G G G+ G G G PR PVG
Sbjct: 1091 RGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGK 1150
Query: 356 FRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRC 415
P P PP R G R G P P PG AP P
Sbjct: 1151 DGTSGHPGPIGPPGPRGNR--GERGSEGSPGHPGQPGPPGPPG----APGPC-------- 1196
Query: 416 EGCGG-GSQPFAGRRAERGKRGAGVPW-----------RTQTLSLLRRCSGALRELESP 462
CGG G+ AG E K G P+ + ++ L+ +G + L SP
Sbjct: 1197 --CGGVGAAAIAGIGGE--KAGGFAPYYGDEPMDFKINTDEIMTSLKSVNGQIESLISP 1251
Score = 36.6 bits (83), Expect = 0.050
Identities = 43/155 (27%), Positives = 55/155 (35%), Gaps = 22/155 (14%)
Query: 290 RPGKPAPRGSAPPARLRGGGGGSGLTQLVG----SGRGSGVTHSVGTHALATRRG----S 341
RPG+P RG P ++G G G + G GR +G G L G +
Sbjct: 235 RPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGR-NGEKGETGAPGLKGENGLPGEN 293
Query: 342 RAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAV 401
AP P+G P +P + P P A G R G P PG A
Sbjct: 294 GAPGPMG---------PRGAPGERGRPGLPG--AAGARGNDGARGSDGQPGPPGPPGTAG 342
Query: 402 LAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRG 436
SP G+ GS G+R E G +G
Sbjct: 343 FPGSPGAK--GEVGPAGSPGSNGAPGQRGEPGPQG 375
Score = 32.7 bits (73), Expect = 0.72
Identities = 41/155 (26%), Positives = 50/155 (32%), Gaps = 10/155 (6%)
Query: 282 TLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGS 341
T PT G P+G P + G G G+ GS G + + S
Sbjct: 93 TAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYS 152
Query: 342 RAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAV 401
V GV P P PP P GP +G P +P PG
Sbjct: 153 PQYDSYDVKSGVAVGGLAGYPGPAGPPGPP-----GPPGTSGHPGSPGSPGYQGPPG--- 204
Query: 402 LAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRG 436
P A G G G S P AG+ E G+ G
Sbjct: 205 -EPGQAGPSGPPGPPGAIGPSGP-AGKDGESGRPG 237
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 61.6 bits (148), Expect = 1e-09
Identities = 97/336 (28%), Positives = 125/336 (37%), Gaps = 63/336 (18%)
Query: 132 SCGGPAPASALRR-----PLTQWDASGGGGRASHSGPRAGTPG-----------GGRSSR 175
SCGG P+ R PL + S G G S +GP T G GG +
Sbjct: 315 SCGGSYPSMGHRANLACSPLGGGEPSPGAGEPSKAGPSGATAGASGRATGPEAAGGGGAG 374
Query: 176 AGARRKTPLSLCP-LKLRKGSSRRCQGLGSSWGGSGTPPPPRAL----WNRHGGAAGARA 230
G P+ P K KG G G++ GG+ PPPPR+ GG A A A
Sbjct: 375 GGGGGYRPIIQSPGYKTGKG------GYGAAAGGATRPPPPRSTATPKCQSLGGPAAAYA 428
Query: 231 QVRGSEKRACPGSTLPPSSVLAGCVGTRA--RGHGGVQRQRFSAPSSHSTGARTLPTPSR 288
+ S G P G +G +A +G GG Q Q S S+S G P P
Sbjct: 429 TGKASGAGGAGGQAYSPGQP-QGLLGPQAYGQGFGGGQAQDLSKAPSYSGGP---PQP-- 482
Query: 289 ARPGKPAPRG-----SAPPARLRG---GGGGSGLTQLVGSGRG-----SGVTHSVG-THA 334
P P P G S P +L+G G G +G +++S G + A
Sbjct: 483 --PSGPPPPGLATCQSYSPDQLQGQLYGVQGEPYPGPAAHSQGLPTASPSLSYSTGHSPA 540
Query: 335 LATRRGSRAPRPVGVLRGVPHFRPLSSPAP-QSPPRSPSVRAFGPRLGAGRLSCPQAPRA 393
L+ G P +G G P P QSPP A G G G P +
Sbjct: 541 LSGHGGGWGPSSLG---GGGEASPSHIIRPLQSPP------ATGRPPGVGSPGAPGKYLS 591
Query: 394 AALPGIAVLAPSPAHDW--GGQRCEGCGGGSQPFAG 427
+ L LAP A + G +G G GS+ AG
Sbjct: 592 SVLASAPFLAPPGAGSYAAGAGGYKGKGDGSELLAG 627
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 57.8 bits (138), Expect = 2e-08
Identities = 101/384 (26%), Positives = 128/384 (33%), Gaps = 55/384 (14%)
Query: 60 HTPAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLD 119
H G G R SGS R P +G + P R + + A GR + P
Sbjct: 282 HRDEGRKTGSQRSSGS---RSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKP 338
Query: 120 ----------CAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPG 169
A +AP P A+ P+P SA A+GG GR R
Sbjct: 339 SSPSPRVRDKAAAAAPTPP-ARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSR 397
Query: 170 GGRSS--RAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTP-PPPRALWNRHGGAA 226
S+ R G RR P P + S R + S G G P P P R G
Sbjct: 398 SSASAPRRRGRRRPRP---APPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGH 454
Query: 227 GARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTP 286
G RA+ R RA P ST P G G R G G R P S + P+
Sbjct: 455 GKRAKER--PPRARPASTSPS----PGAHGRRG-GPEGKSSSRSPGPHPRSWSSSRSPSK 507
Query: 287 SRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRP 346
SR+R + P P+R S L G G A RR SR+ P
Sbjct: 508 SRSRSAEKRPHS---PSR-----SPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSP 559
Query: 347 VGVLRGVPHFRPLSSPAPQSPPRSPSVRAF-------GPRLGAGRLSCPQAPRAAALPGI 399
+ R SP+ P R S R P + LS + R+ +
Sbjct: 560 I-------RKRRRDSPSFMEPRRITSARKRPIPYYRPSPSSSSSCLSSDYSTRSHS---- 608
Query: 400 AVLAPSPAHDWGGQRCEGCGGGSQ 423
+PSP H G G S+
Sbjct: 609 --RSPSPGHSHGSYSSRSHGTRSR 630
Score = 38.1 bits (87), Expect = 0.017
Identities = 59/247 (23%), Positives = 86/247 (34%), Gaps = 30/247 (12%)
Query: 206 WGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGV 265
W S PPP+ + GG +R + R + +C S+ + R R G
Sbjct: 159 WSSSSASPPPKKKKKKKGGHRRSRKKRRLESECSCGSSSPLRKKKKSVKKHRRDRSDSGS 218
Query: 266 QRQR----FSAPSSHSTGARTLPTPSRARPGKPAPR---GSAPPARLRGGGGGSGLTQLV 318
+R+R S+ + P PG+ + R GS+ L S +
Sbjct: 219 RRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHYSDSRSPSRL 278
Query: 319 G-----SGRGSGVTHSVGTHALATRRGSRAPRP-----VGVLRGVPHFRPLSSPAPQSPP 368
GR +G S G+ + + GS P G G RP S+ +P P
Sbjct: 279 SPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKP 338
Query: 369 RSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGR 428
SPS R+ A A P +PSP +G GG + AGR
Sbjct: 339 SSPS----------PRVRDKAAAAAPTPPARGKESPSPR---SAPSSQGRGGRAAGGAGR 385
Query: 429 RAERGKR 435
R R +R
Sbjct: 386 RRRRRRR 392
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 57.4 bits (137), Expect = 3e-08
Identities = 100/379 (26%), Positives = 119/379 (31%), Gaps = 65/379 (17%)
Query: 69 PTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPS 128
P P T RP DAG GPS PG D P P
Sbjct: 554 PGLPGARGLTGRPGDAGPQGKVGPS--------------------GAPGEDGRPGPPGPQ 593
Query: 129 GAQS----CGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPG-GGRSSRAGARRKTP 183
GA+ G P P A P +G G G R G PG G + AG
Sbjct: 594 GARGQPGVMGFPGPKGANGEP----GKAGEKGLPGAPGLR-GLPGKDGETGAAGP----- 643
Query: 184 LSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGS 243
P R QG G G P PP GG G + PG
Sbjct: 644 ----PGPAGPAGERGEQGAPGPSGFQGLPGPPGP--PGEGGKPG---------DQGVPGE 688
Query: 244 TLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPA 303
P G VG R G G +R S + G R LP PG P+G++ PA
Sbjct: 689 AGAP-----GLVGPR--GERGFPGERGSPGAQGLQGPRGLP----GTPGTDGPKGASGPA 737
Query: 304 RLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPA 363
G G GL + G +G+ G +G RG+ P+ P
Sbjct: 738 GPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLT--GPIGPPG 795
Query: 364 PQ-SPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHD-WGGQRCEGCGGG 421
P + V GP AG P PG A A P D G + E G
Sbjct: 796 PAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAG 855
Query: 422 SQPFAGRRAERGKRGAGVP 440
+ AG +G GA P
Sbjct: 856 QKGDAGAPGPQGPSGAPGP 874
Score = 50.8 bits (120), Expect = 3e-06
Identities = 114/403 (28%), Positives = 130/403 (32%), Gaps = 74/403 (18%)
Query: 62 PAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCA 121
P G P +P +P AGE GP R L G + R PGLD A
Sbjct: 241 PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFP-GTPGLPGVKGHRGY-PGLDGA 298
Query: 122 -GSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGG-GRSSRAGAR 179
G A AP G P G G GPR G PG GR+ AGA
Sbjct: 299 KGEAGAPGVKGESGSP----------------GENGSPGPMGPR-GLPGERGRTGPAGAA 341
Query: 180 RKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRA 239
P G + +G + GG G P P A G GAR R
Sbjct: 342 GARGNDGQP-----GPAGPPGPVGPA-GGPGFPGAPGA--KGEAGPTGARGPEGAQGPRG 393
Query: 240 CPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGS 299
PG+ P S AG G G G+ + SA + GA PG P PRG
Sbjct: 394 EPGT--PGSPGPAGASGNP--GTDGIPGAKGSAGAPGIAGA----------PGFPGPRGP 439
Query: 300 APPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAP-----------RPVG 348
P G G G T G G G A +G+ P P G
Sbjct: 440 PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGG 499
Query: 349 V-------------LRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAA 395
V RG P L+ P R PS A GP+ G P P
Sbjct: 500 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA-GPK---GANGDPGRPGEPG 555
Query: 396 LPGIAVLAPSPAHDWGGQRCEGCGG--GSQPFAGRRAERGKRG 436
LPG L P D G Q G G G G +G RG
Sbjct: 556 LPGARGLTGRPG-DAGPQGKVGPSGAPGEDGRPGPPGPQGARG 597
Score = 48.1 bits (113), Expect = 2e-05
Identities = 101/424 (23%), Positives = 124/424 (29%), Gaps = 76/424 (17%)
Query: 66 DCGPTRPSGSLTTR-RPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAG-------PG 117
+ GP P+GS R P + GE GP+ A + + AG PG
Sbjct: 805 EVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG 864
Query: 118 LDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRA--GTPG-GGRSS 174
AP P G GP A + P G GR G G PG G S
Sbjct: 865 PQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSG 924
Query: 175 RAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWG--------GSGTPPPPRALWNRHG--- 223
+ G + S P + + + G G G+ PP P+ L + G
Sbjct: 925 KDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVG 984
Query: 224 -----------------GAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRAR------ 260
G G + S R PG PP L G G R
Sbjct: 985 LPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG--LTGPAGEPGREGSPGA 1042
Query: 261 ----GHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQ 316
G G + + + GA P P PG P P G RG G G
Sbjct: 1043 DGPPGRDGAAGVKGDRGETGAVGAPGAPGP----PGSPGPAGPTGKQGDRGEAGAQGPMG 1098
Query: 317 LVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAF 376
G G+ G G R + RG + L P P S A
Sbjct: 1099 PSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGP----PGPSGDQGAS 1154
Query: 377 GPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRG 436
GP AG P PR P P G G G P G R G+ G
Sbjct: 1155 GP---AG----PSGPRG---------PPGPVGPSGKDGANGIPGPIGP-PGPRGRSGETG 1197
Query: 437 AGVP 440
P
Sbjct: 1198 PAGP 1201
Score = 45.4 bits (106), Expect = 1e-04
Identities = 100/390 (25%), Positives = 120/390 (30%), Gaps = 54/390 (13%)
Query: 68 GPTRPSGSLTTRRPR-DAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPA 126
GP P+G R R D GE GP R PG P
Sbjct: 123 GPQGPAGEQGPRGDRGDKGEKGAPGPRG--------------RDGEPGTPGNPGPPGPPG 168
Query: 127 PSGAQSCGGPAPASALRRPLTQWDASGGGGRAS-HSGPRAGTPGGGRSSRAGARRKTPLS 185
P G GG A +D GG + GP P G R A P
Sbjct: 169 PPGPPGLGGNFAAQMAGG----FDEKAGGAQLGVMQGPMG--PMGPRGPPGPAGAPGPQG 222
Query: 186 LCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNR----HGGAAGARAQVRGSEKRACP 241
G G+ G G P PP + G AG R R P
Sbjct: 223 FQGNPGEPGEP----GVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFP 278
Query: 242 GST-LPPSSVLAGCVGTR-ARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPG---KPAP 296
G+ LP G G A+G G + + S G+ P R PG + P
Sbjct: 279 GTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPG-PMGPRGLPGERGRTGP 337
Query: 297 RGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHF 356
G+A G G +G VG G G + G A G+R P RG P
Sbjct: 338 AGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP-- 395
Query: 357 RPLSSPAPQSPPRSPSVRAF-GPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRC 415
SP P +P G + AG AP A PG P P G Q
Sbjct: 396 GTPGSPGPAGASGNPGTDGIPGAKGSAG------APGIAGAPGF----PGPRGPPGPQGA 445
Query: 416 EGCGG-----GSQPFAGRRAERGKRGAGVP 440
G G G AG + E+G +G P
Sbjct: 446 TGPLGPKGQTGEPGIAGFKGEQGPKGEPGP 475
Score = 41.2 bits (95), Expect = 0.002
Identities = 44/132 (33%), Positives = 50/132 (37%), Gaps = 20/132 (15%)
Query: 51 PRGSVTDSNHTPAGLDCGPTRPSGSLTTRRPR----DAGEAAVSGPSRQRRTSRARTALW 106
P G D A GP+ P+G+ + P+ D GEA G R + R T L
Sbjct: 1081 PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPG-ERGLKGHRGFTGLQ 1139
Query: 107 GRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAG 166
G GP P PSG Q GPA S R P SG G GP G
Sbjct: 1140 G-----LPGP--------PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGP-IG 1185
Query: 167 TPG-GGRSSRAG 177
PG GRS G
Sbjct: 1186 PPGPRGRSGETG 1197
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 57.4 bits (137), Expect = 3e-08
Identities = 100/379 (26%), Positives = 119/379 (31%), Gaps = 65/379 (17%)
Query: 69 PTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPS 128
P P T RP DAG GPS PG D P P
Sbjct: 485 PGLPGARGLTGRPGDAGPQGKVGPS--------------------GAPGEDGRPGPPGPQ 524
Query: 129 GAQS----CGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPG-GGRSSRAGARRKTP 183
GA+ G P P A P +G G G R G PG G + AG
Sbjct: 525 GARGQPGVMGFPGPKGANGEP----GKAGEKGLPGAPGLR-GLPGKDGETGAAGP----- 574
Query: 184 LSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGS 243
P R QG G G P PP GG G + PG
Sbjct: 575 ----PGPAGPAGERGEQGAPGPSGFQGLPGPPGP--PGEGGKPG---------DQGVPGE 619
Query: 244 TLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPA 303
P G VG R G G +R S + G R LP PG P+G++ PA
Sbjct: 620 AGAP-----GLVGPR--GERGFPGERGSPGAQGLQGPRGLP----GTPGTDGPKGASGPA 668
Query: 304 RLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPA 363
G G GL + G +G+ G +G RG+ P+ P
Sbjct: 669 GPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLT--GPIGPPG 726
Query: 364 PQ-SPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHD-WGGQRCEGCGGG 421
P + V GP AG P PG A A P D G + E G
Sbjct: 727 PAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAG 786
Query: 422 SQPFAGRRAERGKRGAGVP 440
+ AG +G GA P
Sbjct: 787 QKGDAGAPGPQGPSGAPGP 805
Score = 50.8 bits (120), Expect = 3e-06
Identities = 114/403 (28%), Positives = 130/403 (32%), Gaps = 74/403 (18%)
Query: 62 PAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCA 121
P G P +P +P AGE GP R L G + R PGLD A
Sbjct: 172 PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFP-GTPGLPGVKGHRGY-PGLDGA 229
Query: 122 -GSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGG-GRSSRAGAR 179
G A AP G P G G GPR G PG GR+ AGA
Sbjct: 230 KGEAGAPGVKGESGSP----------------GENGSPGPMGPR-GLPGERGRTGPAGAA 272
Query: 180 RKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRA 239
P G + +G + GG G P P A G GAR R
Sbjct: 273 GARGNDGQP-----GPAGPPGPVGPA-GGPGFPGAPGA--KGEAGPTGARGPEGAQGPRG 324
Query: 240 CPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGS 299
PG+ P S AG G G G+ + SA + GA PG P PRG
Sbjct: 325 EPGT--PGSPGPAGASGNP--GTDGIPGAKGSAGAPGIAGA----------PGFPGPRGP 370
Query: 300 APPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAP-----------RPVG 348
P G G G T G G G A +G+ P P G
Sbjct: 371 PGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGG 430
Query: 349 V-------------LRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAA 395
V RG P L+ P R PS A GP+ G P P
Sbjct: 431 VGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLA-GPK---GANGDPGRPGEPG 486
Query: 396 LPGIAVLAPSPAHDWGGQRCEGCGG--GSQPFAGRRAERGKRG 436
LPG L P D G Q G G G G +G RG
Sbjct: 487 LPGARGLTGRPG-DAGPQGKVGPSGAPGEDGRPGPPGPQGARG 528
Score = 48.1 bits (113), Expect = 2e-05
Identities = 101/424 (23%), Positives = 124/424 (29%), Gaps = 76/424 (17%)
Query: 66 DCGPTRPSGSLTTR-RPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAG-------PG 117
+ GP P+GS R P + GE GP+ A + + AG PG
Sbjct: 736 EVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG 795
Query: 118 LDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRA--GTPG-GGRSS 174
AP P G GP A + P G GR G G PG G S
Sbjct: 796 PQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSG 855
Query: 175 RAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWG--------GSGTPPPPRALWNRHG--- 223
+ G + S P + + + G G G+ PP P+ L + G
Sbjct: 856 KDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVG 915
Query: 224 -----------------GAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRAR------ 260
G G + S R PG PP L G G R
Sbjct: 916 LPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG--LTGPAGEPGREGSPGA 973
Query: 261 ----GHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQ 316
G G + + + GA P P PG P P G RG G G
Sbjct: 974 DGPPGRDGAAGVKGDRGETGAVGAPGAPGP----PGSPGPAGPTGKQGDRGEAGAQGPMG 1029
Query: 317 LVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAF 376
G G+ G G R + RG + L P P S A
Sbjct: 1030 PSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGP----PGPSGDQGAS 1085
Query: 377 GPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRG 436
GP AG P PR P P G G G P G R G+ G
Sbjct: 1086 GP---AG----PSGPRG---------PPGPVGPSGKDGANGIPGPIGP-PGPRGRSGETG 1128
Query: 437 AGVP 440
P
Sbjct: 1129 PAGP 1132
Score = 45.4 bits (106), Expect = 1e-04
Identities = 100/390 (25%), Positives = 120/390 (30%), Gaps = 54/390 (13%)
Query: 68 GPTRPSGSLTTRRPR-DAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPA 126
GP P+G R R D GE GP R PG P
Sbjct: 54 GPQGPAGEQGPRGDRGDKGEKGAPGPRG--------------RDGEPGTPGNPGPPGPPG 99
Query: 127 PSGAQSCGGPAPASALRRPLTQWDASGGGGRAS-HSGPRAGTPGGGRSSRAGARRKTPLS 185
P G GG A +D GG + GP P G R A P
Sbjct: 100 PPGPPGLGGNFAAQMAGG----FDEKAGGAQLGVMQGPMG--PMGPRGPPGPAGAPGPQG 153
Query: 186 LCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNR----HGGAAGARAQVRGSEKRACP 241
G G+ G G P PP + G AG R R P
Sbjct: 154 FQGNPGEPGEP----GVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFP 209
Query: 242 GST-LPPSSVLAGCVGTR-ARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPG---KPAP 296
G+ LP G G A+G G + + S G+ P R PG + P
Sbjct: 210 GTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPG-PMGPRGLPGERGRTGP 268
Query: 297 RGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHF 356
G+A G G +G VG G G + G A G+R P RG P
Sbjct: 269 AGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP-- 326
Query: 357 RPLSSPAPQSPPRSPSVRAF-GPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRC 415
SP P +P G + AG AP A PG P P G Q
Sbjct: 327 GTPGSPGPAGASGNPGTDGIPGAKGSAG------APGIAGAPGF----PGPRGPPGPQGA 376
Query: 416 EGCGG-----GSQPFAGRRAERGKRGAGVP 440
G G G AG + E+G +G P
Sbjct: 377 TGPLGPKGQTGEPGIAGFKGEQGPKGEPGP 406
Score = 41.2 bits (95), Expect = 0.002
Identities = 44/132 (33%), Positives = 50/132 (37%), Gaps = 20/132 (15%)
Query: 51 PRGSVTDSNHTPAGLDCGPTRPSGSLTTRRPR----DAGEAAVSGPSRQRRTSRARTALW 106
P G D A GP+ P+G+ + P+ D GEA G R + R T L
Sbjct: 1012 PTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPG-ERGLKGHRGFTGLQ 1070
Query: 107 GRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAG 166
G GP P PSG Q GPA S R P SG G GP G
Sbjct: 1071 G-----LPGP--------PGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGP-IG 1116
Query: 167 TPG-GGRSSRAG 177
PG GRS G
Sbjct: 1117 PPGPRGRSGETG 1128
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 57.0 bits (136), Expect = 4e-08
Identities = 110/411 (26%), Positives = 149/411 (36%), Gaps = 66/411 (16%)
Query: 68 GPTRPSGSLTTRRPRDAGEAAVSGP---SRQRRTSRARTALWGRRSRRAAGPGLDCAGSA 124
GP+ P G + RP+ G+A+ S P + R+ +A + + +AGP +
Sbjct: 150 GPSEPRGIYASERPKSLGDASPSAPEVVGARAAVPRSFSAPY-PTAGGSAGPEACSSAER 208
Query: 125 PAPSGAQSCGGPAPASALR------RPLTQWDASGGGG--------------RASHSGPR 164
A +G P A A+R RP T +GG G R +G
Sbjct: 209 RARAGPFLTPSPLHAVAMRSPRPCGRPPTDSPDAGGAGRPLDGYISALLRRRRRRGAGQP 268
Query: 165 AGTPGG--GRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRH 222
+PGG G R + R+ P P GS+R + G G P P AL
Sbjct: 269 RTSPGGADGGPRRQNSVRQRPPDASP---SPGSARPAREPSLERVG-GHPTSPAALSRAW 324
Query: 223 GGAAGARAQVRGSEKRACPGSTLPPSSVLAGCV-------GTRARGHGGVQRQRFSAPSS 275
+ + A E A P + PP S G + G +A G R P
Sbjct: 325 ASSWESEA---APEPAAPPAAPSPPDSPAEGRLVKAQYIPGAQAATRGLPGRAARRKPPP 381
Query: 276 HSTGARTLPTPSRARPGKPAPRGSAPPA-------RLRGGGGGSGLTQLVGSGRGSGVTH 328
+ G +P R RP RG A R R T L+ GR S V
Sbjct: 382 LTRGRSVEQSPPRERPRAAGRRGRMAEASGRRGSPRARKASRSQSETSLL--GRASAVPS 439
Query: 329 SVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGA-GRLSC 387
+ A R R PRP RG P + A Q+ R+ A GR
Sbjct: 440 GPPKYPTAEREEPRPPRP---RRG-----PAPTLAAQAAGSCRRWRSTAEIDAADGRRVR 491
Query: 388 PQAPRAAALPGIAVLAPSPAHDWGGQR-CEGCGGG-SQPFAGRRAERGKRG 436
P+AP AA +PG P P+ +R GC G S+ AGR G+RG
Sbjct: 492 PRAP-AARVPG-----PGPSPSAPQRRLLYGCAGSDSECSAGRLGPLGRRG 536
Score = 49.3 bits (116), Expect = 7e-06
Identities = 78/285 (27%), Positives = 98/285 (34%), Gaps = 68/285 (23%)
Query: 61 TPAGLDCGPTRPSGSLTTRRPRDAGEAAVSG-PSRQRRTSR---------ARTALWGRRS 110
+P G D GP R + +RP DA + S P+R+ R A + W
Sbjct: 271 SPGGADGGPRRQNS--VRQRPPDASPSPGSARPAREPSLERVGGHPTSPAALSRAWASSW 328
Query: 111 RRAAGPGLDCAGSAPAPS---------------GAQSCGGPAPASALRR---PLTQWDAS 152
A P +AP+P GAQ+ P A RR PLT+
Sbjct: 329 ESEAAPEPAAPPAAPSPPDSPAEGRLVKAQYIPGAQAATRGLPGRAARRKPPPLTR---- 384
Query: 153 GGGGRASHSGPRAGTPGGGRSSR---AGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGS 209
G S PR GR R A RR +P + RK S R Q S G +
Sbjct: 385 --GRSVEQSPPRERPRAAGRRGRMAEASGRRGSP------RARKAS--RSQSETSLLGRA 434
Query: 210 GTPP--PPRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQR 267
P PP+ R + R R P TL A+ G +R
Sbjct: 435 SAVPSGPPKY-------PTAEREEPRPPRPRRGPAPTLA------------AQAAGSCRR 475
Query: 268 QRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGS 312
R +A + G R P AR P P SAP RL G GS
Sbjct: 476 WRSTAEIDAADGRRVRPRAPAARVPGPGPSPSAPQRRLLYGCAGS 520
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 55.8 bits (133), Expect = 8e-08
Identities = 107/390 (27%), Positives = 131/390 (33%), Gaps = 65/390 (16%)
Query: 68 GPTRPSGSLTTRRPR-DAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPA 126
GP PSG R P +AG A GP R + +R PG D
Sbjct: 370 GPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGL-----------PGADGRAGVMG 418
Query: 127 PSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGG-GRSSRAGARRKTPLS 185
P G++ GPA +R P DA G G GPR G PG G AG ++ P+
Sbjct: 419 PPGSRGASGPA---GVRGP--NGDA-GRPGEPGLMGPR-GLPGSPGNIGPAG--KEGPVG 469
Query: 186 LCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNR-------HGGAAGARAQVRGSEKR 238
L + R G G G G P P + H G AGAR
Sbjct: 470 LPGIDGRPGPIGPAGARGEP-GNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNN 528
Query: 239 ACPGSTLPPSSVLAGCVGTRAR----GHGGVQRQRFSAPSSHSTGARTL--------PTP 286
G P + G G + G G+ A G R L P
Sbjct: 529 GAQGPPGPQG--VQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAG 586
Query: 287 SRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRP 346
R G P G+A P G G SG G+ GV +VGT G P
Sbjct: 587 PRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGT------AGPSGPSG 640
Query: 347 VGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSP 406
+ RG P + P +R G + P A PG AV AP P
Sbjct: 641 LPGERGA-----AGIPGGKGEKGEPGLR--------GEIGNPGRDGARGAPG-AVGAPGP 686
Query: 407 AHDWGGQRCEGCGGGSQPFAGRRAERGKRG 436
A G + G G + P AG R G+RG
Sbjct: 687 AGATGDRGEAGAAGPAGP-AGPRGSPGERG 715
Score = 46.2 bits (108), Expect = 6e-05
Identities = 113/410 (27%), Positives = 139/410 (33%), Gaps = 62/410 (15%)
Query: 64 GLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAA-GP----GL 118
GLD +P P GE G + R L G R R A GP G
Sbjct: 184 GLDGLKGQPGAPGVKGEPGAPGENGTPGQTGAR-------GLPGERGRVGAPGPAGARGS 236
Query: 119 DCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRA--GTPG----GGR 172
D + P+G GP P + A G G A +GPR G PG G
Sbjct: 237 DGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGP 296
Query: 173 SSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHG--GAAGARA 230
GA T ++ GL G G P P R + G GA GAR
Sbjct: 297 PGNPGANGLT------------GAKGAAGLPGVAGAPGLPGP-RGIPGPVGAAGATGARG 343
Query: 231 QV--------RG-SEKRACPGSTLPPSSV-LAGCVGTRA-RGHGGVQRQRFSAPSSHSTG 279
V +G S + PGS P +G G R G G S G
Sbjct: 344 LVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPG 403
Query: 280 ARTLP-TPSRARP-GKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALAT 337
+R LP RA G P RG++ PA +RG G +G G G+ S G A
Sbjct: 404 SRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAG 463
Query: 338 RRG-------SRAPRPVGV--LRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCP 388
+ G P P+G RG P + P P+ P P G + AG
Sbjct: 464 KEGPVGLPGIDGRPGPIGPAGARGEP--GNIGFPGPKGPTGDPGKN--GDKGHAGLAGAR 519
Query: 389 QAPRAAALPGIAVLAPSPAHDWGGQRCEGCGG--GSQPFAGRRAERGKRG 436
AP G A P P GG+ +G G G Q G G+ G
Sbjct: 520 GAPGPDGNNG-AQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVG 568
Score = 45.4 bits (106), Expect = 1e-04
Identities = 101/377 (26%), Positives = 129/377 (34%), Gaps = 66/377 (17%)
Query: 68 GPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALW--GRRSRRAAGPGLDCAGSAP 125
GP+ PSG P + G A + G ++ R + GR R A PG A AP
Sbjct: 634 GPSGPSGL-----PGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGA-PG---AVGAP 684
Query: 126 APSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARRKTPLS 185
P+GA G A A+ P + G G +GP G + + GA+ +
Sbjct: 685 GPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGE---- 740
Query: 186 LCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTL 245
+G G +G P + GAAG G
Sbjct: 741 --------------RGAKGPKGENGVVGPTGPV-----GAAGP------------AGPNG 769
Query: 246 PPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPS--RARPGKPAPRGSAPPA 303
PP AG +RG GG ++ TG P PS PG P P G
Sbjct: 770 PPGP--AG-----SRGDGGPPGMTGFPGAAGRTGP---PGPSGISGPPGPPGPAGKEGLR 819
Query: 304 RLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRG-SRAPRPVGVLRGVPHFRPLSSP 362
RG G G T VG+ G G A G P P G+L G P L
Sbjct: 820 GPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLL-GAPGILGLPGS 878
Query: 363 APQS--PPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEG-CG 419
+ P + +V GP AG P A PG+ AP A G +G G
Sbjct: 879 RGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNG-APGEAGRDGNPGNDGPPG 937
Query: 420 GGSQPFAGRRAERGKRG 436
QP G + ERG G
Sbjct: 938 RDGQP--GHKGERGYPG 952
Score = 43.5 bits (101), Expect = 4e-04
Identities = 103/432 (23%), Positives = 127/432 (29%), Gaps = 107/432 (24%)
Query: 51 PRGSVTDSNHTPAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRS 110
P G+ D A GP P GS P + GE +GP+ + A +
Sbjct: 686 PAGATGDRGEAGAAGPAGPAGPRGS-----PGERGEVGPAGPNGFAGPAGAAGQPGAKGE 740
Query: 111 RRAAGPG-----------LDCAGSA-----PAPSGAQSCGGP------------------ 136
R A GP + AG A P P+G++ GGP
Sbjct: 741 RGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGP 800
Query: 137 ------------APASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARRK--T 182
A LR P G G GP G S AG T
Sbjct: 801 SGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGT 860
Query: 183 P----LSLCPLKLRKGSSRRCQGLGSSWGGSGTPPP------------PRALWN------ 220
P L P L SR +GL G G P P P A+ +
Sbjct: 861 PGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGA 920
Query: 221 -----RHG-----GAAGARAQVRGSEKRACPGSTLPPSSVLA----GCVGTRARGHGGVQ 266
R G G G Q +R PG+ P + A G VG + HG
Sbjct: 921 PGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGK-HGNRG 979
Query: 267 RQRFSAP--SSHSTGARTLPTPS--RARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGR 322
S P + + G R P R G+P +G L+G G GL + G
Sbjct: 980 ETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHG 1039
Query: 323 GSGVTHSVGTHALATRRGSRAPR-------------PVGVLRGVPHFRPLSSPAPQSPPR 369
G SVG G P P G+ H P P P PP
Sbjct: 1040 DQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPG 1099
Query: 370 SPSVRAFGPRLG 381
P V G G
Sbjct: 1100 PPGVSGGGYDFG 1111
Score = 39.3 bits (90), Expect = 0.008
Identities = 108/458 (23%), Positives = 134/458 (29%), Gaps = 92/458 (20%)
Query: 41 IARNDCWDRVPRGSVTDSNHTPAGLDCGPTRPSGSLTTRRPRD-AGEAAVSGPSRQRRTS 99
+ + DR PRG + GPT P G P G A +
Sbjct: 30 VRKGPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLG 89
Query: 100 RARTALWGRRSRRAAGPGLDCAGSAPAPSGAQSCGG---------PAPASALRRPLTQWD 150
L G R PG A AP P G Q G PA A P +
Sbjct: 90 PGPMGLMGPRGP----PG---AAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAG 142
Query: 151 ASGGGGRASHSGPRA-----------GTPG-------------GGRSSRAGARRKTPLSL 186
G G+ G R GTPG G + GA
Sbjct: 143 EDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPG 202
Query: 187 CPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHG-GAAGARAQVRGSEKRACPGSTL 245
P + +GL G G P P A + G G + + PG+
Sbjct: 203 APGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPG 262
Query: 246 PPSSVLAGCVGTR-----ARGHGGVQRQRFSAPS-----------SHSTGARTLPTPSRA 289
P + G VG A G V S P + + GA LP + A
Sbjct: 263 PKGEI--GAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGA 320
Query: 290 RPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGV 349
PG P PRG P G G GL G G + + G A +G P
Sbjct: 321 -PGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEG 379
Query: 350 LRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPG----IAVLAPS 405
RG P PP P +R +P + LPG V+ P
Sbjct: 380 KRG-----PNGEAGSAGPPGPPGLRG--------------SPGSRGLPGADGRAGVMGPP 420
Query: 406 PAHDWGGQRCEGCGG--GSQPFAGRRAERGKRG-AGVP 440
G + G G G AGR E G G G+P
Sbjct: 421 -----GSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLP 453
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 54.7 bits (130), Expect = 2e-07
Identities = 101/418 (24%), Positives = 145/418 (34%), Gaps = 36/418 (8%)
Query: 36 PEFPQIARNDCWDRVPRGSVTDSNHTPAGLDCGPTRP---SGSLTTRRPRDAGEAAVSGP 92
P P R++C D P TP P+ P + LT +R R E++V
Sbjct: 1470 PRTPSRGRSEC-DSSPEPKALPQ--TPRPRSRSPSSPELNNKCLTPQRERSGSESSVD-- 1524
Query: 93 SRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDAS 152
+ + ART L G+RSR + LD SA ++S P + R PL Q S
Sbjct: 1525 ----QKTVARTPL-GQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRS 1579
Query: 153 GGGGRASHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTP 212
G +P SR RR S +K + ++ R Q GS
Sbjct: 1580 G------------SSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQS-GSDSSPEPKA 1626
Query: 213 PPPRALWNRHGGAAGARAQVRGSEKRACPGST--LPPSSVLAGCVGTRARGHGGVQ---- 266
P PRAL R + ++ + E + S+ PP S A G+R+ +
Sbjct: 1627 PAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTAR-RGSRSSPEPKTKSRTP 1685
Query: 267 -RQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGS-GLTQLVGSGRGS 324
R+R S S T L SR+ P R PP R S + S R
Sbjct: 1686 PRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRR 1745
Query: 325 GVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGR 384
S T + R S +P+P G+ R R + + RS S ++ R R
Sbjct: 1746 RSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSR 1805
Query: 385 LSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGVPWR 442
R G +P+ G P R+ R R + PW+
Sbjct: 1806 SRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSR-SRTSPAPWK 1862
Score = 41.2 bits (95), Expect = 0.002
Identities = 85/327 (25%), Positives = 115/327 (35%), Gaps = 38/327 (11%)
Query: 69 PTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAP- 127
P R S T+ R R G + SR+R SR A W +RSR A P + P
Sbjct: 1825 PARQESSRTSSRRR-RGRSRTPPTSRKRSRSRTSPAPW-KRSRSRASPATHRRSRSRTPL 1882
Query: 128 -SGAQSCGGPAPA----SALRRPLTQWDASGGGGRASHSGPRAGTPGGGR---SSRAGAR 179
S +S +P S R +T+ + S R+ TP R SR
Sbjct: 1883 ISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTT 1942
Query: 180 RKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPR--------ALWNRHGGAAGARAQ 231
R+ S P R+ S R + S T P R + R + +
Sbjct: 1943 RRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVT 2002
Query: 232 VRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGV---QRQRFSAPSSHSTGARTLPTPSR 288
R S R P + S + R+R + +R R +P + +R+ TP
Sbjct: 2003 RRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRS-RTPRT 2061
Query: 289 ARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVG 348
AR GK + S P R R G S S + S A GSR P PV
Sbjct: 2062 AR-GKRSLTRSPPAIRRRSASGSS-----------SDRSRSATPPATRNHSGSRTP-PVA 2108
Query: 349 V--LRGVPHFRPLSSPAPQSPPRSPSV 373
+ R RP SP P RSP +
Sbjct: 2109 LNSSRMSCFSRPSMSPTPLDRCRSPGM 2135
Score = 38.9 bits (89), Expect = 0.010
Identities = 85/346 (24%), Positives = 116/346 (33%), Gaps = 81/346 (23%)
Query: 69 PTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPS 128
P R SG +R P G + P+R+ R SR+RT RRS R+ PA
Sbjct: 640 PARRSGRSRSRTPARRGRSRSRTPARRGR-SRSRTP--ARRSGRSRS-------RTPARR 689
Query: 129 GAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGG----RSSRAGARRKTPL 184
G P + R L + G S + R G G SR RR
Sbjct: 690 GRSRSRTPRRGRSRSRSLVR-----RGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSN 744
Query: 185 SLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGST 244
S +K + SSRR + L S PR+ +A+ R S +R+ GS+
Sbjct: 745 SSPEMKKSRISSRRSRSLSS----------PRS-----------KAKSRLSLRRSLSGSS 783
Query: 245 LPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPAR 304
P + + +R R S S +RT P SR+ P + S P+R
Sbjct: 784 PCP----------KQKSQTPPRRSR-SGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSR 832
Query: 305 LRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPL--SSP 362
S H R+GS P R SSP
Sbjct: 833 ---------------QSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSP 877
Query: 363 APQSPPRSPSVRAFG------------PRLGAGRLSCPQAPRAAAL 396
P+ R+PS + PR R S PQ P+ A+
Sbjct: 878 DPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQ-PKVKAI 922
Score = 35.8 bits (81), Expect = 0.085
Identities = 80/316 (25%), Positives = 108/316 (34%), Gaps = 32/316 (10%)
Query: 93 SRQRRTSRARTALWGRRSRRA-AGPGLDCAGSAPAP-SGAQSCGGPAPASAL--RRPLTQ 148
S+ ++ R+R+ +SRRA D A S+ S ++S +AL R P
Sbjct: 240 SKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSP- 298
Query: 149 WDASGGGGRASHSGPRAGTPGGGRSSRAGARRKTPLSLCPL------KLRKGSSRRCQGL 202
ASG G GT R S K P S P K K ++R
Sbjct: 299 --ASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSS--PYEDKDKDKKEKSATRPSPSP 354
Query: 203 GSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGH 262
S G P P L RHGG+ A S++ P S P+ +
Sbjct: 355 ERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQ 414
Query: 263 GGVQRQRFSAP-----SSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGS-GLTQ 316
+P S H++ + P P+ A PG S+P ++ R G +
Sbjct: 415 SSSSESSPPSPQPTKVSRHASSSPESPKPAPA-PGSHREISSSPTSKNRSHGRAKRDKSH 473
Query: 317 LVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRG-VPHFRPLSSPAPQSPPRSPSVRA 375
R G + S T A R SR P G R P +R S RSP R
Sbjct: 474 SHTPSRRMGRSRSPAT-AKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRR- 531
Query: 376 FGPRLGAGRLSCPQAP 391
GR PQ P
Sbjct: 532 -------GRSRSPQRP 540
Score = 32.3 bits (72), Expect = 0.94
Identities = 66/279 (23%), Positives = 98/279 (35%), Gaps = 29/279 (10%)
Query: 107 GRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAG 166
G S A G G PA +GAQ P+ +AL+ P + +S +S S +
Sbjct: 2492 GMLSVPAPGVPHSDVGEPPASTGAQQ---PSALAALQ-PAKERRSSSSSSSSSSSSSSSS 2547
Query: 167 TPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGG-- 224
+ SS + + S P++ R S TP P A+ R G
Sbjct: 2548 SSSSSSSSSGSSSSDSEGSSLPVQPEVALKRV---------PSPTPAPKEAV--REGRPP 2596
Query: 225 ----AAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGA 280
A R S + S+ SS + + + S+PS G
Sbjct: 2597 EPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGP 2656
Query: 281 RTLPTPSRARPGKPAPRGSAPPAR----LRGGGGGSGLTQLVGSGRGSGVTHSVGTHALA 336
+ LP P+ + P R S P + LR S V R S + +
Sbjct: 2657 QALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLS--YSPVERRRPSPQPSPRDQQSSS 2714
Query: 337 TRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRA 375
+ RGSR + G R H R +P+P+ P R S R+
Sbjct: 2715 SERGSRRGQR-GDSRSPSHKRRRETPSPR-PMRHRSSRS 2751
Score = 31.2 bits (69), Expect = 2.1
Identities = 68/304 (22%), Positives = 103/304 (33%), Gaps = 33/304 (10%)
Query: 69 PTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPG-LDCAGSAPAP 127
PT + ++R P+ A + GP T+ A G R+ A P L A APA
Sbjct: 2318 PTAANYPSSSRTPQAPASANLVGPRSAHATAPVNIA--GSRTAAALAPASLTSARMAPAL 2375
Query: 128 SGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARRKTPLSLC 187
SGA P SA R SG R+ TP S + P
Sbjct: 2376 SGANLTSPRVPLSAYER------VSGRTSPPLLDRARSRTPPSAPSQSRMTSERAP---- 2425
Query: 188 PLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPP 247
SSR +G + S PP + A +++ ++ GS
Sbjct: 2426 -----SPSSR----MGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGS---- 2472
Query: 248 SSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLR- 306
S+ +G V T G S P+ + P+ +P+ + PA+ R
Sbjct: 2473 QSLSSGAVAT-TTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERR 2531
Query: 307 -GGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQ 365
S + S S + S G+ + + S +P L+ VP +PAP+
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPS----PTPAPK 2587
Query: 366 SPPR 369
R
Sbjct: 2588 EAVR 2591
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 54.3 bits (129), Expect = 2e-07
Identities = 101/390 (25%), Positives = 123/390 (31%), Gaps = 70/390 (17%)
Query: 62 PAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCA 121
P GL P P P + GE SGP R A PG
Sbjct: 186 PRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGK--NGDDGEAGKPGRPGE 243
Query: 122 GSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRA--GTPG-GGRSSRAGA 178
P P GA+ G A ++ G G A +GP+ G+PG G + G
Sbjct: 244 RGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGP 303
Query: 179 RRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKR 238
R GL G G P P A N GA GA
Sbjct: 304 R---------------------GLPGERGRPGAPGPAGARGN--DGATGAAGP------- 333
Query: 239 ACPGSTLPPSSV-LAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPR 297
PG T P G VG A+G G Q R S P R PG P P
Sbjct: 334 --PGPTGPAGPPGFPGAVG--AKGEAGPQGPRGSEG----------PQGVRGEPGPPGPA 379
Query: 298 GSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFR 357
G+A PA G G G G+ G+ + G G + P G P
Sbjct: 380 GAAGPA---GNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGP-------GGPPGP 429
Query: 358 PLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPR-------AAALPGIAVLAPSPAHDW 410
+S P +P A G G + P P A PG L P P +
Sbjct: 430 KGNSGEPGAPGSKGDTGAKG-EPGPVGVQGPPGPAGEEGKRGARGEPGPTGL-PGPPGER 487
Query: 411 GGQRCEGCGGGSQPFAGRRAERGKRGAGVP 440
GG G G+ AG + G+RG+ P
Sbjct: 488 GGPGSRGF-PGADGVAGPKGPAGERGSPGP 516
Score = 53.1 bits (126), Expect = 5e-07
Identities = 107/402 (26%), Positives = 135/402 (33%), Gaps = 53/402 (13%)
Query: 51 PRGSVTDSNHTPAGLDCGPTRPSGSLTTR----RPRDAGEAAVSGPSRQRRTSRARTALW 106
PRG+ + A D G GS P + G A + GP R + + A
Sbjct: 696 PRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADG 755
Query: 107 GRRS---RRAAGP-GLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSG 162
R GP G AP G GPA + R G G A +G
Sbjct: 756 SPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAG 815
Query: 163 PRA--GTPGG-GRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALW 219
P G PG G AGA+ G G +G PP +
Sbjct: 816 PPGADGQPGAKGEPGDAGAK---------------------GDAGPPGPAGPAGPPGPIG 854
Query: 220 NRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRA-RGHGGVQRQRFSAPSSHST 278
N GA GA+ RGS PG+T P + AG VG G+ G A
Sbjct: 855 NV--GAPGAKG-ARGSA--GPPGATGFPGA--AGRVGPPGPSGNAGPPGPPGPAGKEGGK 907
Query: 279 GARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATR 338
G R P+ RPG+ P G PA +G G G G+ G+ G L +
Sbjct: 908 GPRGETGPA-GRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQ 966
Query: 339 RGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPG 398
RG R G+P P P Q P + R +G L+ P P + G
Sbjct: 967 RGERG------FPGLP--GPSGEPGKQGPSGASGERGPPGPMGPPGLAGP--PGESGREG 1016
Query: 399 IAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGVP 440
SP D G +G G + P AG G GA P
Sbjct: 1017 APGAEGSPGRD-GSPGAKGDRGETGP-AGPPGAPGAPGAPGP 1056
Score = 52.4 bits (124), Expect = 9e-07
Identities = 91/355 (25%), Positives = 113/355 (31%), Gaps = 37/355 (10%)
Query: 62 PAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCA 121
P G D P DAG +GP+ A + +R +AGP
Sbjct: 816 PPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGP----P 871
Query: 122 GSAPAPSGAQSCGGPAPASALRRPLTQWDAS--GGGGRASHSGPRAGTPG---------- 169
G+ P A G P P+ P A GG G +GP AG PG
Sbjct: 872 GATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGP-AGRPGEVGPPGPPGP 930
Query: 170 GGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGAR 229
G GA P R GL G G P P G G +
Sbjct: 931 AGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGP-----SGEPGKQ 985
Query: 230 AQVRGSEKRACPGSTLPPSSVLAGCVGTRAR-GHGGVQRQ--RFSAPSSHSTGARTLPTP 286
S +R PG PP LAG G R G G + R +P + T P
Sbjct: 986 GPSGASGERGPPGPMGPPG--LAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAG 1043
Query: 287 ---SRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRA 343
+ PG P P G A + RG G +G VG G G G +
Sbjct: 1044 PPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQG 1103
Query: 344 PRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPG 398
R + RG + P PP SP + GP +G P +A PG
Sbjct: 1104 DRGIKGHRGFSGLQ-----GPPGPPGSPGEQ--GPSGASGPAGPRGPPGSAGAPG 1151
Score = 50.8 bits (120), Expect = 3e-06
Identities = 108/424 (25%), Positives = 132/424 (31%), Gaps = 63/424 (14%)
Query: 66 DCGPTRPSGSLTTR----RPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAG-PGLDC 120
+ GP P GS + P G A +GP+ A + AG PG
Sbjct: 354 EAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFP- 412
Query: 121 AGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRA--GTPG-GGRSSRAG 177
A PSG Q GGP + G G GP G PG G + G
Sbjct: 413 --GARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRG 470
Query: 178 ARRKT-PLSLC-PLKLRKGSSRR----CQGLGSSWG-----GSGTPPPPRALWNRHG--- 223
AR + P L P R G R G+ G GS P P+ G
Sbjct: 471 ARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPG 530
Query: 224 --GAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTR-------ARGHGGVQR---QRFS 271
G GA+ G T PP AG G ARG GV + +
Sbjct: 531 EAGLPGAKGLTGSPGSPGPDGKTGPPGP--AGQDGRPGPPGPPGARGQAGVMGFPGPKGA 588
Query: 272 APSSHSTGARTLPTPSRA-----------RPGKPAPRGSAPPARLRGGGGGSGLTQLVGS 320
A G R +P P A G P P G A +G G G L G
Sbjct: 589 AGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGP 648
Query: 321 GRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRL 380
G G + G+ P RG P R + P + PR + A G
Sbjct: 649 AGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGAN-GAPGNDG 707
Query: 381 GAGRLSCPQAPRAAALPGI--------AVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAER 432
G P AP + PG+ A P P D G +G G G+ R
Sbjct: 708 AKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGS----PGKDGVR 763
Query: 433 GKRG 436
G G
Sbjct: 764 GLTG 767
Score = 49.3 bits (116), Expect = 7e-06
Identities = 108/400 (27%), Positives = 125/400 (31%), Gaps = 76/400 (19%)
Query: 66 DCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGP----GLDCA 121
+C P P GS P D V GP R R AGP G+
Sbjct: 90 ECCPVCPDGS---ESPTDQETTGVEGPKGDTGP---------RGPRGPAGPPGRDGIPGQ 137
Query: 122 GSAPAPSGAQSCGGPAPASALRRPLTQW---DASGGG----GRASHSGPRAGTPGGGRSS 174
P P G GP P + + S GG G SGPR G PG +
Sbjct: 138 PGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPR-GLPGPPGAP 196
Query: 175 RAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRG 234
+ P G G G P PP N G AG +
Sbjct: 197 GPQGFQGPP-----------GEPGEPGASGPMGPRGPPGPPGK--NGDDGEAGKPGR--- 240
Query: 235 SEKRACPGST----LPPSSVLAGCVGTR-------ARGHGGVQRQRFSAPSSHSTGA--- 280
+R PG LP ++ L G G R A+G G + S GA
Sbjct: 241 PGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQ 300
Query: 281 ---RTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALAT 337
R LP R RPG P P G+ G G G T G G + G
Sbjct: 301 MGPRGLPG-ERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQG 359
Query: 338 RRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALP 397
RGS P+ V RG P P P A GP G P A A P
Sbjct: 360 PRGSEGPQGV---RG--------EPGPPGP-----AGAAGPAGNPGADGQPGAKGANGAP 403
Query: 398 GIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGA 437
GIA AP G +G GG P G E G G+
Sbjct: 404 GIAG-APGFPGARGPSGPQGPGGPPGP-KGNSGEPGAPGS 441
>gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo
sapiens]
Length = 330
Score = 53.5 bits (127), Expect = 4e-07
Identities = 81/296 (27%), Positives = 110/296 (37%), Gaps = 71/296 (23%)
Query: 101 ARTALWGRRSRRAAGPGLDCA-GSAPAPSGAQSCGGPAPASALRRPLTQW-DASGGGGRA 158
+R+AL +R+ PG A G A A SG + P+ AS++ P ++W D+SG G
Sbjct: 6 SRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEG 65
Query: 159 SHSGPRAGTPGGG--RSSRAGARRKTPLSLCPLKLRKGSSRR-------CQGLGSSWGGS 209
+ GT GGG R + AG R + P +LR S + C S G+
Sbjct: 66 AAD---CGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGA 122
Query: 210 GTPPPPRALWNRHGGAAG---------------ARAQVRGSEKRACP---GSTLPPSSVL 251
PR+ R G AG + A RGS+ R C G PP
Sbjct: 123 EMDRAPRS--GRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPAR 180
Query: 252 --------AGCVGTRARGHGGVQR------------QRFSAPSSHSTGA-RTLPTPSRAR 290
+G G++ RG+ G + F+A G R P +R
Sbjct: 181 TEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSR 240
Query: 291 PGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRP 346
PG P +AP + GG LT T ALA GS AP P
Sbjct: 241 PGPRTPVPTAPYLAVLPERGGRALT----------------TPALARTPGSLAPSP 280
>gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo
sapiens]
Length = 330
Score = 53.5 bits (127), Expect = 4e-07
Identities = 81/296 (27%), Positives = 110/296 (37%), Gaps = 71/296 (23%)
Query: 101 ARTALWGRRSRRAAGPGLDCA-GSAPAPSGAQSCGGPAPASALRRPLTQW-DASGGGGRA 158
+R+AL +R+ PG A G A A SG + P+ AS++ P ++W D+SG G
Sbjct: 6 SRSALGRQRAWGGCVPGRGSASGLAAAASGRAASMTPSTASSMEGPRSRWKDSSGSAGEG 65
Query: 159 SHSGPRAGTPGGG--RSSRAGARRKTPLSLCPLKLRKGSSRR-------CQGLGSSWGGS 209
+ GT GGG R + AG R + P +LR S + C S G+
Sbjct: 66 AAD---CGTAGGGGERGAPAGGARGSGGGPPPWRLRNEVSPKASPPRPTCSVCRKSPSGA 122
Query: 210 GTPPPPRALWNRHGGAAG---------------ARAQVRGSEKRACP---GSTLPPSSVL 251
PR+ R G AG + A RGS+ R C G PP
Sbjct: 123 EMDRAPRS--GRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPAR 180
Query: 252 --------AGCVGTRARGHGGVQR------------QRFSAPSSHSTGA-RTLPTPSRAR 290
+G G++ RG+ G + F+A G R P +R
Sbjct: 181 TEITTHSRSGPTGSQTRGNCGAAGSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSR 240
Query: 291 PGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRP 346
PG P +AP + GG LT T ALA GS AP P
Sbjct: 241 PGPRTPVPTAPYLAVLPERGGRALT----------------TPALARTPGSLAPSP 280
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 52.8 bits (125), Expect = 7e-07
Identities = 98/369 (26%), Positives = 120/369 (32%), Gaps = 54/369 (14%)
Query: 68 GPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSA--- 124
GPT P G P D G G SR + G R + AGS
Sbjct: 234 GPTGPPGE-----PGDPGPMGPIG-SRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGAR 287
Query: 125 --PAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGT-PGGGRSSRAGARRK 181
P G G L P + A G G A +GP P G R R
Sbjct: 288 GFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRL 347
Query: 182 TPLSLCPLKLRKGSSRRCQGLGSSW--GGSGTPPPPRALWNRHGGAAGARAQVRGSEKRA 239
P + G + +G G SG P P G GAR +R
Sbjct: 348 GPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGM--KGEAGPTGARGPEGPQGQR- 404
Query: 240 CPGSTLPPSSV----LAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPA 295
G T PP V L G +GT G + S ++G P S PG P
Sbjct: 405 --GETGPPGPVGSPGLPGAIGT-----DGTPGAKGPTGSPGTSG----PPGSAGPPGSPG 453
Query: 296 PRGSAPPARLRGGGGGSGLTQLVGSG--RGS----GVTHSVGTHALATRRGSRA------ 343
P+GS P +RG G G+ G +G G+ +G +RG R
Sbjct: 454 PQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVG 513
Query: 344 -PRPVGVL-----RGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALP 397
P PVG RG P L P R P V + GP+ G P P LP
Sbjct: 514 PPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGP-VGSSGPK---GSQGDPGRPGEPGLP 569
Query: 398 GIAVLAPSP 406
G L +P
Sbjct: 570 GARGLTGNP 578
Score = 50.8 bits (120), Expect = 3e-06
Identities = 92/341 (26%), Positives = 112/341 (32%), Gaps = 54/341 (15%)
Query: 125 PAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPG-GGRSSRAGARRKTP 183
P P G+ G + Q A G G SGP G PG G G T
Sbjct: 617 PGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGP-VGPPGLAGERGEQGPPGPTG 675
Query: 184 LSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGS 243
P G G G G P P A+ G G R + +R PG
Sbjct: 676 FQGLP------GPPGPPGEGGKPGDQGVPGDPGAV-----GPLGPRGERGNPGERGEPGI 724
Query: 244 T-LPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPP 302
T LP +AG GHG + PS T T P + PG+ G+ P
Sbjct: 725 TGLPGEKGMAG-------GHGPDGPKGSPGPSG--TPGDTGPPGLQGMPGERGIAGTPGP 775
Query: 303 ARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRA-PRPVGVL-----RGVPHF 356
RGG G G G+ G+ +G A G + P P G++ RG P
Sbjct: 776 KGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGS 835
Query: 357 RPLSSP-------APQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHD 409
R + P PQ P P V+ G P A PG LA SP
Sbjct: 836 RGENGPTGAVGFAGPQGPDGQPGVK--------GEPGEPGQKGDAGSPGPQGLAGSPGPH 887
Query: 410 W--------GGQRCEGCGG--GSQPFAGRRAERGKRGAGVP 440
GG+ +G G G AGR G GA P
Sbjct: 888 GPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGP 928
Score = 45.8 bits (107), Expect = 8e-05
Identities = 84/318 (26%), Positives = 100/318 (31%), Gaps = 58/318 (18%)
Query: 66 DCGPTRPSGSLTTRR-PRDAGEAAVSGPSRQRRTSRAR--TALWGRRSRRAAGPGLDCAG 122
D GP P G + P + G+ GP T+ R + G+R R PGL
Sbjct: 955 DRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGM-PGL---- 1009
Query: 123 SAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARRKT 182
P P+G GP A+ + P G G GP G R GA +
Sbjct: 1010 --PGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGE- 1066
Query: 183 PLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPG 242
+ +G GL S G GTP P A G AG R PG
Sbjct: 1067 -------RGDRGDPGPA-GLPGSQGAPGTPGPVGA-----PGDAGQRGDPGSRGPIGPPG 1113
Query: 243 STLPPSSVLAGCVGTRA-RGHGGVQRQRFSAPSSHSTGARTLPTP--------SRARPGK 293
L G G R +G G + R TG + LP P S PG
Sbjct: 1114 RA--GKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGP 1171
Query: 294 PAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGV 353
PRG P G G G +G GV SVG P G
Sbjct: 1172 FGPRGPPGPVGPSGKEGNPGPLGPIGP---PGVRGSVGEAG-----------PEG----- 1212
Query: 354 PHFRPLSSPAPQSPPRSP 371
P P P PP P
Sbjct: 1213 ----PPGEPGPPGPPGPP 1226
Score = 42.4 bits (98), Expect = 0.001
Identities = 118/432 (27%), Positives = 142/432 (32%), Gaps = 78/432 (18%)
Query: 34 QNPEFPQIARNDCWDRVPRGS-----VTDSNHTPAGLDCGPTRPSGSLTTRRPRDAGEAA 88
+ PE PQ R + P GS ++ TP GPT G T+ P AG
Sbjct: 395 RGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAK--GPTGSPG--TSGPPGSAGPPG 450
Query: 89 VSGPSRQRRTSRARTALWGRRSRRAAGPGLD-CAGSA-----PAPSGAQSCGGPAPASAL 142
GP + T G R + PG+ G A P P G Q GP
Sbjct: 451 SPGP-------QGSTGPQGIRGQ-PGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGK 502
Query: 143 RRPLTQWDASGGGGRASHSGP--RAGTPGG-GRSSRAGAR-RKTPLSLCPLKLRKGSSRR 198
R P G G G G PG G GA+ + P+ GSS
Sbjct: 503 RGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPV---------GSS-- 551
Query: 199 CQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTR 258
G S G G P P G GAR PG P + G +G
Sbjct: 552 --GPKGSQGDPGRPGEP--------GLPGARGLTGN------PGVQGPEGKL--GPLG-- 591
Query: 259 ARGHGGVQRQRFSAPSSHSTGARTLPTP--SRARPGKPAPRGSAPPARLRGGGGGSGLTQ 316
A G G S G+ LP P S PGKP G+A RG G G
Sbjct: 592 APGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEV- 650
Query: 317 LVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVP----HFRPLSSPAPQSPPRSP- 371
G + VG LA RG + P +G+P P Q P P
Sbjct: 651 --------GPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPG 702
Query: 372 SVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDW--GGQRCEGCGGGSQPFAGRR 429
+V GPR G P LPG +A D G G G + P G +
Sbjct: 703 AVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGP-PGLQ 761
Query: 430 AERGKRG-AGVP 440
G+RG AG P
Sbjct: 762 GMPGERGIAGTP 773
Score = 39.7 bits (91), Expect = 0.006
Identities = 79/291 (27%), Positives = 96/291 (32%), Gaps = 46/291 (15%)
Query: 113 AAGPGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGR 172
A PG +P P G G + P G GR GP AG PG
Sbjct: 872 AGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGP-AGAPGPAG 930
Query: 173 SSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQV 232
+ P L+ GS R G G PP ++ G G Q
Sbjct: 931 PLGEPGKEGPP----GLRGDPGSHGRV-------GDRGPAGPPGGPGDK--GDPGEDGQ- 976
Query: 233 RGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPG 292
PG PP AG G RG G+ QR G LP P+ PG
Sbjct: 977 --------PGPDGPPGP--AGTTG--QRGIVGMPGQR------GERGMPGLPGPA-GTPG 1017
Query: 293 KPAPRGS----APPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRA-PRPV 347
K P G+ PP + G G +G G +G + G RG R P P
Sbjct: 1018 KVGPTGATGDKGPPGPV-GPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPA 1076
Query: 348 GV--LRGVPHF-RPLSSPAPQSPPRSPSVRA-FGP--RLGAGRLSCPQAPR 392
G+ +G P P+ +P P R GP R G L PQ PR
Sbjct: 1077 GLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPR 1127
Score = 31.6 bits (70), Expect = 1.6
Identities = 46/197 (23%), Positives = 58/197 (29%), Gaps = 32/197 (16%)
Query: 240 CPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGS 299
C PP C T G+ R R G + T R RPG P GS
Sbjct: 82 CADPVTPPGECCPVCSQTPGGGNTNFGRGRKGQKGE--PGLVPVVTGIRGRPGPAGPPGS 139
Query: 300 APPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPL 359
P RG G R G R P+ + GVP +P
Sbjct: 140 QGPRGERGPKG---------------------------RPGPRGPQGIDGEPGVPG-QP- 170
Query: 360 SSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCG 419
+P P P P A + + G+ + P G Q +G
Sbjct: 171 GAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQ 230
Query: 420 GGSQPFAGRRAERGKRG 436
GG+ P G E G G
Sbjct: 231 GGAGP-TGPPGEPGDPG 246
Score = 30.8 bits (68), Expect = 2.7
Identities = 72/287 (25%), Positives = 93/287 (32%), Gaps = 64/287 (22%)
Query: 167 TPGGGRSSRAGARR--KTPLSLCP----LKLRKGSSRR--CQGLGSSWGGSGTPPP--PR 216
TPGGG ++ R+ K L P ++ R G + QG G G P P P+
Sbjct: 99 TPGGGNTNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQ 158
Query: 217 ALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSH 276
+ G G Q PG+ PP G G+ R FSA +
Sbjct: 159 GI----DGEPGVPGQ---------PGAPGPPGH-------PSHPGPDGLSRP-FSAQMAG 197
Query: 277 STGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALA 336
L + PG P G P L+G GG+G T G
Sbjct: 198 LDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGE---------------- 241
Query: 337 TRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLG-AGRLSCPQAPRAAA 395
P P+G P+ S P+ PP P R G G + +P A
Sbjct: 242 ----PGDPGPMG---------PIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARG 288
Query: 396 LPGIAVLAPSPAHDWGGQRCEGCGG--GSQPFAGRRAERGKRGAGVP 440
PG L H G + EG G G+ G G GA P
Sbjct: 289 FPGAPGLPGLKGHR-GHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGP 334
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 52.4 bits (124), Expect = 9e-07
Identities = 94/308 (30%), Positives = 109/308 (35%), Gaps = 70/308 (22%)
Query: 69 PTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPS 128
P SGS TT A PS+ + SR R A G R PG A ++PAP+
Sbjct: 93 PPGRSGSGTTF------SAVPPRPSQHQSGSRLRPAAPGPR------PGCSSARASPAPA 140
Query: 129 GAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARRKTPLSLCP 188
Q+ AP A ASGG G S + G R SRAG + P L
Sbjct: 141 APQAAARTAPGRA---------ASGGSGPGSRG--QGSDQVGARPSRAGGQ---PPPLTC 186
Query: 189 LKLRKGSSR-----RCQGLG-SSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPG 242
+ R R R GL S GSGT W GG A A S A
Sbjct: 187 RRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAA----SSPSADFS 242
Query: 243 STLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTL-PTPSRARPGKPAPRGSAP 301
S P ++ G R RG GG +R S G R L P P R R K
Sbjct: 243 SDSPQPIIIFG-GALRVRGCGG---RRRSNGQGTQPGCRLLSPAPPRRRYRK-------- 290
Query: 302 PARLRGGGGGSGLTQLVGSGR-----------GSGVTHSVGTHALATRRGSRAPRPVGVL 350
P L GGG S T V + R THS+GT AP+P
Sbjct: 291 PLTLSFGGGVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGT----------APKPKCWK 340
Query: 351 RGVPHFRP 358
P RP
Sbjct: 341 HSQPWHRP 348
Score = 42.4 bits (98), Expect = 0.001
Identities = 68/239 (28%), Positives = 81/239 (33%), Gaps = 46/239 (19%)
Query: 224 GAAGARAQVRGSEKRACPG--STLPPSSVLAGCVG-----TRARGHGGVQRQRFSAPSSH 276
G G+ G RAC G + S+ C TR+R ++R FS S+
Sbjct: 7 GPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSR-KSRLERGTFSPESAA 65
Query: 277 STGARTLPTP-SRARPGK--PAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTH 333
T P P SR RP P PR +PP R GSG T S V H
Sbjct: 66 GTEVSGAPHPDSRTRPAARPPHPRTRSPPGR-----SGSGTTF-------SAVPPRPSQH 113
Query: 334 ALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSP-PRSPSVRAFGPRLGAGRLSCPQAPR 392
+R AP P RP S A SP P +P A AP
Sbjct: 114 QSGSRLRPAAPGP----------RPGCSSARASPAPAAPQAAA------------RTAPG 151
Query: 393 AAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGVPWRTQTLSLLRR 451
AA G + D G R GG P RR R + P+R L L R
Sbjct: 152 RAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSR 210
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 52.4 bits (124), Expect = 9e-07
Identities = 94/308 (30%), Positives = 109/308 (35%), Gaps = 70/308 (22%)
Query: 69 PTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPS 128
P SGS TT A PS+ + SR R A G R PG A ++PAP+
Sbjct: 93 PPGRSGSGTTF------SAVPPRPSQHQSGSRLRPAAPGPR------PGCSSARASPAPA 140
Query: 129 GAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARRKTPLSLCP 188
Q+ AP A ASGG G S + G R SRAG + P L
Sbjct: 141 APQAAARTAPGRA---------ASGGSGPGSRG--QGSDQVGARPSRAGGQ---PPPLTC 186
Query: 189 LKLRKGSSR-----RCQGLG-SSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPG 242
+ R R R GL S GSGT W GG A A S A
Sbjct: 187 RRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAA----SSPSADFS 242
Query: 243 STLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTL-PTPSRARPGKPAPRGSAP 301
S P ++ G R RG GG +R S G R L P P R R K
Sbjct: 243 SDSPQPIIIFG-GALRVRGCGG---RRRSNGQGTQPGCRLLSPAPPRRRYRK-------- 290
Query: 302 PARLRGGGGGSGLTQLVGSGR-----------GSGVTHSVGTHALATRRGSRAPRPVGVL 350
P L GGG S T V + R THS+GT AP+P
Sbjct: 291 PLTLSFGGGVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGT----------APKPKCWK 340
Query: 351 RGVPHFRP 358
P RP
Sbjct: 341 HSQPWHRP 348
Score = 42.4 bits (98), Expect = 0.001
Identities = 68/239 (28%), Positives = 81/239 (33%), Gaps = 46/239 (19%)
Query: 224 GAAGARAQVRGSEKRACPG--STLPPSSVLAGCVG-----TRARGHGGVQRQRFSAPSSH 276
G G+ G RAC G + S+ C TR+R ++R FS S+
Sbjct: 7 GPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSR-KSRLERGTFSPESAA 65
Query: 277 STGARTLPTP-SRARPGK--PAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTH 333
T P P SR RP P PR +PP R GSG T S V H
Sbjct: 66 GTEVSGAPHPDSRTRPAARPPHPRTRSPPGR-----SGSGTTF-------SAVPPRPSQH 113
Query: 334 ALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSP-PRSPSVRAFGPRLGAGRLSCPQAPR 392
+R AP P RP S A SP P +P A AP
Sbjct: 114 QSGSRLRPAAPGP----------RPGCSSARASPAPAAPQAAA------------RTAPG 151
Query: 393 AAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGVPWRTQTLSLLRR 451
AA G + D G R GG P RR R + P+R L L R
Sbjct: 152 RAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSR 210
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 52.4 bits (124), Expect = 9e-07
Identities = 94/308 (30%), Positives = 109/308 (35%), Gaps = 70/308 (22%)
Query: 69 PTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPS 128
P SGS TT A PS+ + SR R A G R PG A ++PAP+
Sbjct: 93 PPGRSGSGTTF------SAVPPRPSQHQSGSRLRPAAPGPR------PGCSSARASPAPA 140
Query: 129 GAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARRKTPLSLCP 188
Q+ AP A ASGG G S + G R SRAG + P L
Sbjct: 141 APQAAARTAPGRA---------ASGGSGPGSRG--QGSDQVGARPSRAGGQ---PPPLTC 186
Query: 189 LKLRKGSSR-----RCQGLG-SSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPG 242
+ R R R GL S GSGT W GG A A S A
Sbjct: 187 RRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAA----SSPSADFS 242
Query: 243 STLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTL-PTPSRARPGKPAPRGSAP 301
S P ++ G R RG GG +R S G R L P P R R K
Sbjct: 243 SDSPQPIIIFG-GALRVRGCGG---RRRSNGQGTQPGCRLLSPAPPRRRYRK-------- 290
Query: 302 PARLRGGGGGSGLTQLVGSGR-----------GSGVTHSVGTHALATRRGSRAPRPVGVL 350
P L GGG S T V + R THS+GT AP+P
Sbjct: 291 PLTLSFGGGVSSPTHPVVAPRRHFPRSVPRFPAGFRTHSLGT----------APKPKCWK 340
Query: 351 RGVPHFRP 358
P RP
Sbjct: 341 HSQPWHRP 348
Score = 42.4 bits (98), Expect = 0.001
Identities = 68/239 (28%), Positives = 81/239 (33%), Gaps = 46/239 (19%)
Query: 224 GAAGARAQVRGSEKRACPG--STLPPSSVLAGCVG-----TRARGHGGVQRQRFSAPSSH 276
G G+ G RAC G + S+ C TR+R ++R FS S+
Sbjct: 7 GPGGSYPITFGCGARACGGRRANFSLSAAFRTCSSGTCRLTRSR-KSRLERGTFSPESAA 65
Query: 277 STGARTLPTP-SRARPGK--PAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTH 333
T P P SR RP P PR +PP R GSG T S V H
Sbjct: 66 GTEVSGAPHPDSRTRPAARPPHPRTRSPPGR-----SGSGTTF-------SAVPPRPSQH 113
Query: 334 ALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSP-PRSPSVRAFGPRLGAGRLSCPQAPR 392
+R AP P RP S A SP P +P A AP
Sbjct: 114 QSGSRLRPAAPGP----------RPGCSSARASPAPAAPQAAA------------RTAPG 151
Query: 393 AAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGVPWRTQTLSLLRR 451
AA G + D G R GG P RR R + P+R L L R
Sbjct: 152 RAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLKSR 210
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 52.4 bits (124), Expect = 9e-07
Identities = 129/511 (25%), Positives = 169/511 (33%), Gaps = 99/511 (19%)
Query: 12 GGTATVNVLPSLGEKALTALSHQNPEFPQIARNDCWDRVPRGSVT-----DSNHTPAGLD 66
GGT N P+ + + + E+ +I + R RGS T +S+ P+ +
Sbjct: 1068 GGTGGPNHPPAPRGRTASETRSEGSEYEEIPKR----RRQRGSETGSETHESDLAPSDKE 1123
Query: 67 CGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRR--SRRAAGPGLD----C 120
PT G+LT A P+ R T+R R SRR G G C
Sbjct: 1124 A-PTPKEGTLTQVPLAPPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGRGGGRPPPQVC 1182
Query: 121 AG-SAPAPSGAQSCGGPAPASALRRPLTQW--------DASGGGGRASHSGPRAGT-PGG 170
G S PA S A P + PL + A GG S+ G G P
Sbjct: 1183 PGWSPPAKSLAPKKPPTGPLPPSKEPLKEKLIPGPLSPVARGGSNGGSNVGMEDGERPRR 1242
Query: 171 GRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARA 230
R RA + K P + R+ ++R +G S + P P AL A RA
Sbjct: 1243 RRHGRAQQQDKPPRFRRLKQERENAARGSEGKPSLTLPASAPGPEEALTTVTVAPAPRRA 1302
Query: 231 QVRGSE------------------------KRACPGSTLPPSSVLAGCVGTRARGHGGVQ 266
+ + +R PP + VGT G GG
Sbjct: 1303 AAKSPDLSNQNSDQANEEWETASESSDFTSERRGDKEAPPPVLLTPKAVGTPGGGGGGAV 1362
Query: 267 RQRFSAPSSHSTGARTLPTPSRA----RPG------KPAPRGSAPPARLRGGGGGSGLTQ 316
SA S R R+ RPG +P P G A + GGGG G
Sbjct: 1363 -PGISAMSRGDLSQRAKDLSKRSFSSQRPGMERQNRRPGPGGKAGSSGSSSGGGGGGPGG 1421
Query: 317 LVGSGRGSGVTHSVGTHALATRRGSRAP--RPVGV--------------LRGVPHFRP-- 358
G GRG + + + SR P RP G+ L V H P
Sbjct: 1422 RTGPGRGDKRSWP------SPKNRSRPPEERPPGLPLPPPPPSSSAVFRLDQVIHSNPAG 1475
Query: 359 LSSPAPQSPPRSPSVRAFG--PRLGAGRLSCPQAP------RAAALPGIAVLAPSPAHDW 410
+ Q R SV A G PR G PQ P R + L+ P +
Sbjct: 1476 IQQALAQLSSRQGSVTAPGGHPRHKPGLPQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEE 1535
Query: 411 GGQRCEGCGG------GSQPFAGRRAERGKR 435
G G GG G PF +R ER R
Sbjct: 1536 PGPMVRGVGGTPRDSAGVSPFPPKRRERPPR 1566
Score = 34.7 bits (78), Expect = 0.19
Identities = 69/253 (27%), Positives = 87/253 (34%), Gaps = 67/253 (26%)
Query: 153 GGGGRASHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTP 212
G GG+A SG +G GGG R G R G R SW
Sbjct: 1400 GPGGKAGSSGSSSGGGGGGPGGRTGPGR-------------GDKR-------SW------ 1433
Query: 213 PPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPP----SSVLAGCVGTRARGHGGVQRQ 268
P P+ NR R E+R PG LPP SS + G+Q+
Sbjct: 1434 PSPK---NRS----------RPPEERP-PGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQA 1479
Query: 269 RFSAPSSHSTGARTLP-TPSRARPGKP-APRGSA--PPARLRGGGGGSGLTQ-------- 316
A S G+ T P R +PG P AP+G + PP R SGL+
Sbjct: 1480 --LAQLSSRQGSVTAPGGHPRHKPGLPQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEEPG 1537
Query: 317 LVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSS---------PAPQSP 367
+ G G S G +R R PR +L+ P SS P PQ+
Sbjct: 1538 PMVRGVGGTPRDSAGVSPFPPKRRERPPRKPELLQEESLPPPHSSGFLGSKPEGPGPQAE 1597
Query: 368 PRSPSVRAFGPRL 380
R A P +
Sbjct: 1598 SRDTGTEALTPHI 1610
Score = 32.0 bits (71), Expect = 1.2
Identities = 74/296 (25%), Positives = 90/296 (30%), Gaps = 56/296 (18%)
Query: 121 AGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARR 180
AG PA GP P R T+W G R G P RAG +
Sbjct: 898 AGRKPARGVGSGGQGPPPPRRESRTETRWGPRPGSSRRGIPPEEPGAP----PRRAGPIK 953
Query: 181 KTP-----LSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGS 235
K P L P L +G + PP P L G G +
Sbjct: 954 KPPPPTKVEELPPKPLEQGDE------------TPKPPKPDPLKITKGKLGGPKETPPNG 1001
Query: 236 EKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPA 295
P S G R RG G + ++ G R SR
Sbjct: 1002 NLSPAPRLRRDYSYERVGPTSCRGRGRGEYFARGRGFRGTY--GGRGRGARSREFRSYRE 1059
Query: 296 PRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGT--HALATRRGSR----------- 342
RG RGGG G GR + T S G+ + RR R
Sbjct: 1060 FRGDDG----RGGGTGGPNHPPAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHES 1115
Query: 343 --------APRP-VGVLRGVPHFRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQ 389
AP P G L V PL+ P P +PP SP+ F R GR+ P+
Sbjct: 1116 DLAPSDKEAPTPKEGTLTQV----PLAPPPPGAPP-SPAPARFTAR--GGRVFTPR 1164
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 52.0 bits (123), Expect = 1e-06
Identities = 88/340 (25%), Positives = 113/340 (33%), Gaps = 45/340 (13%)
Query: 116 PGLDCAGSAPAPSGAQSCGG----PAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGG 171
PGL +P P G + G P PA + G + GPR G PG
Sbjct: 1139 PGLPGFPGSPGPMGIRGDQGRDGIPGPAG---------EKGETGLLRAPPGPR-GNPG-- 1186
Query: 172 RSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQ 231
+ A R P L RKG+ G + G G P PP G G R
Sbjct: 1187 -AQGAKGDRGAP-GFPGLPGRKGAMGDAGPRGPT-GIEGFPGPPGLPGAIIPGQTGNRGP 1243
Query: 232 VRGSEKRACPGSTLPPSSVLAGCVGTR-ARGHGGVQRQRFSAPSSHSTGARTLPTPSRAR 290
PG PP S + G G + + GH G + +A G P
Sbjct: 1244 PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAP----GT 1299
Query: 291 PGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVL 350
PG P PRG G G + G G S+G +G P GV
Sbjct: 1300 PGLPGPRGDP---------GFQGFPGVKGEKGNPGFLGSIGPPGPIGPKG-----PPGVR 1345
Query: 351 RGVPHFRPLSSPAPQSPPRSPSVRAF----GPRLGAGRLSCPQAPRAAALPGIAVLAPSP 406
+ +S P PP +P GP G L P PR P P
Sbjct: 1346 GDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLG-PCGPRGKPGKDGKPGTPGP 1404
Query: 407 AHDWGGQRCEGCGG--GSQPFAGRRAERGKRGAGVPWRTQ 444
A + G + +G G GS G + +RG G+ W T+
Sbjct: 1405 AGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWTTR 1444
Score = 40.4 bits (93), Expect = 0.003
Identities = 83/338 (24%), Positives = 99/338 (29%), Gaps = 68/338 (20%)
Query: 116 PGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPR--AGTPGGGRS 173
PG P G + GP AL G G GP AG PG G
Sbjct: 562 PGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQ 621
Query: 174 SRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVR 233
G L + G G P PP G AG R ++
Sbjct: 622 GEPG------------------------LQGTQGVPGAPGPP--------GEAGPRGEL- 648
Query: 234 GSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRAR--- 290
S PG PP GH G Q S G LP P
Sbjct: 649 -SVSTPVPGPPGPPGPP----------GHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIP 697
Query: 291 ----PGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRP 346
PG P P+G +G G G G G+ + G A+A G P
Sbjct: 698 GIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGF 757
Query: 347 VGVLRGVPHFRPLSSPAPQSPPRSPSVRAF-GPRLGAGRLSCPQAPRAAALPGIAVLAPS 405
G + P P +P GPR G+ P P PG + P
Sbjct: 758 PGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQ---PGPPGEQGPPGRCIEGPR 814
Query: 406 PAHDWGGQRCEGCGG--GSQPFAGRRAERGKRG-AGVP 440
G Q G G G Q GRR + G +G G+P
Sbjct: 815 -----GAQGLPGLNGLKGQQ---GRRGKTGPKGDPGIP 844
Score = 37.7 bits (86), Expect = 0.022
Identities = 83/336 (24%), Positives = 106/336 (31%), Gaps = 72/336 (21%)
Query: 116 PGLDCAGSAPAPSGAQS-CGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSS 174
PG P P G G P P P A G G H G R G R
Sbjct: 176 PGAPGPQGLPGPPGFPGPVGPPGPPGFFGFP----GAMGPRGPKGHMGERVIGHKGERGV 231
Query: 175 RAGARRKTPLSLCPLKLRKGSSRR-CQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVR 233
+ P + L +R +G G G P PP G +G +
Sbjct: 232 KGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPP--------GPSGLPGESY 283
Query: 234 GSEKRACPGST----------LPPSSVLAGCVGTRA----RGHGGVQRQR-------FSA 272
GSEK A PG +P G G R G G++ Q+ F
Sbjct: 284 GSEKGA-PGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRG 342
Query: 273 PSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGT 332
P+ + + PG P PRG+ P +G G G+ GS R G+ + G
Sbjct: 343 PTEYYDTYQE--KGDEGTPGPPGPRGARGP---QGPSGPPGVPGSPGSSR-PGLRGAPGW 396
Query: 333 HALATRRGSRAPRPVGVLRGVPHFRPLS-------SPAPQSPP----------------- 368
L +G R RP G P + SP P PP
Sbjct: 397 PGLKGSKGERG-RPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPG 455
Query: 369 --RSPSVRAF-GPRLGAGRL--SCPQAPRAAALPGI 399
SP + GP+ G L CP P LPG+
Sbjct: 456 YLGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGL 491
Score = 34.7 bits (78), Expect = 0.19
Identities = 90/385 (23%), Positives = 110/385 (28%), Gaps = 83/385 (21%)
Query: 68 GPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAG----------PG 117
GP P G+ T P G + G QR T A+ + + + PG
Sbjct: 901 GPPGPPGNPGT--PGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958
Query: 118 LDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAG 177
L P G + G L+ G G A GPR G G
Sbjct: 959 LKGFAGNPGEKGNRGVPGMPGLKGLK---------GLPGPAGPPGPRGDLGSTGNPGEPG 1009
Query: 178 ARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEK 237
R G+ S G G P G+ G R + +
Sbjct: 1010 LR---------------------GIPGSMGNMGMP-----------GSKGKRGTLGFPGR 1037
Query: 238 RACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTP--SRARPGKPA 295
PG LP L G G G R P TG LP + G+P
Sbjct: 1038 AGRPG--LPGIHGLQGDKGEPGYSEG----TRPGPPGP--TGDPGLPGDMGKKGEMGQPG 1089
Query: 296 PRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPH 355
P G PA G G G L G G G L G R P G+P
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGP------PGLPG 1143
Query: 356 FRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRC 415
F SP P G R GR P G+ P P + G Q
Sbjct: 1144 FP--GSPGP-----------MGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGA 1190
Query: 416 EGCGGGSQPFAGRRAERGKRGAGVP 440
+G G+ F G +G G P
Sbjct: 1191 KG-DRGAPGFPGLPGRKGAMGDAGP 1214
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 52.0 bits (123), Expect = 1e-06
Identities = 88/340 (25%), Positives = 113/340 (33%), Gaps = 45/340 (13%)
Query: 116 PGLDCAGSAPAPSGAQSCGG----PAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGG 171
PGL +P P G + G P PA + G + GPR G PG
Sbjct: 1139 PGLPGFPGSPGPMGIRGDQGRDGIPGPAG---------EKGETGLLRAPPGPR-GNPG-- 1186
Query: 172 RSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQ 231
+ A R P L RKG+ G + G G P PP G G R
Sbjct: 1187 -AQGAKGDRGAP-GFPGLPGRKGAMGDAGPRGPT-GIEGFPGPPGLPGAIIPGQTGNRGP 1243
Query: 232 VRGSEKRACPGSTLPPSSVLAGCVGTR-ARGHGGVQRQRFSAPSSHSTGARTLPTPSRAR 290
PG PP S + G G + + GH G + +A G P
Sbjct: 1244 PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAP----GT 1299
Query: 291 PGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVL 350
PG P PRG G G + G G S+G +G P GV
Sbjct: 1300 PGLPGPRGDP---------GFQGFPGVKGEKGNPGFLGSIGPPGPIGPKG-----PPGVR 1345
Query: 351 RGVPHFRPLSSPAPQSPPRSPSVRAF----GPRLGAGRLSCPQAPRAAALPGIAVLAPSP 406
+ +S P PP +P GP G L P PR P P
Sbjct: 1346 GDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLG-PCGPRGKPGKDGKPGTPGP 1404
Query: 407 AHDWGGQRCEGCGG--GSQPFAGRRAERGKRGAGVPWRTQ 444
A + G + +G G GS G + +RG G+ W T+
Sbjct: 1405 AGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWTTR 1444
Score = 40.4 bits (93), Expect = 0.003
Identities = 83/338 (24%), Positives = 99/338 (29%), Gaps = 68/338 (20%)
Query: 116 PGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPR--AGTPGGGRS 173
PG P G + GP AL G G GP AG PG G
Sbjct: 562 PGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQ 621
Query: 174 SRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVR 233
G L + G G P PP G AG R ++
Sbjct: 622 GEPG------------------------LQGTQGVPGAPGPP--------GEAGPRGEL- 648
Query: 234 GSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRAR--- 290
S PG PP GH G Q S G LP P
Sbjct: 649 -SVSTPVPGPPGPPGPP----------GHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIP 697
Query: 291 ----PGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRP 346
PG P P+G +G G G G G+ + G A+A G P
Sbjct: 698 GIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGF 757
Query: 347 VGVLRGVPHFRPLSSPAPQSPPRSPSVRAF-GPRLGAGRLSCPQAPRAAALPGIAVLAPS 405
G + P P +P GPR G+ P P PG + P
Sbjct: 758 PGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQ---PGPPGEQGPPGRCIEGPR 814
Query: 406 PAHDWGGQRCEGCGG--GSQPFAGRRAERGKRG-AGVP 440
G Q G G G Q GRR + G +G G+P
Sbjct: 815 -----GAQGLPGLNGLKGQQ---GRRGKTGPKGDPGIP 844
Score = 37.7 bits (86), Expect = 0.022
Identities = 83/336 (24%), Positives = 106/336 (31%), Gaps = 72/336 (21%)
Query: 116 PGLDCAGSAPAPSGAQS-CGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSS 174
PG P P G G P P P A G G H G R G R
Sbjct: 176 PGAPGPQGLPGPPGFPGPVGPPGPPGFFGFP----GAMGPRGPKGHMGERVIGHKGERGV 231
Query: 175 RAGARRKTPLSLCPLKLRKGSSRR-CQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVR 233
+ P + L +R +G G G P PP G +G +
Sbjct: 232 KGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPP--------GPSGLPGESY 283
Query: 234 GSEKRACPGST----------LPPSSVLAGCVGTRA----RGHGGVQRQR-------FSA 272
GSEK A PG +P G G R G G++ Q+ F
Sbjct: 284 GSEKGA-PGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRG 342
Query: 273 PSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGT 332
P+ + + PG P PRG+ P +G G G+ GS R G+ + G
Sbjct: 343 PTEYYDTYQE--KGDEGTPGPPGPRGARGP---QGPSGPPGVPGSPGSSR-PGLRGAPGW 396
Query: 333 HALATRRGSRAPRPVGVLRGVPHFRPLS-------SPAPQSPP----------------- 368
L +G R RP G P + SP P PP
Sbjct: 397 PGLKGSKGERG-RPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPG 455
Query: 369 --RSPSVRAF-GPRLGAGRL--SCPQAPRAAALPGI 399
SP + GP+ G L CP P LPG+
Sbjct: 456 YLGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGL 491
Score = 34.7 bits (78), Expect = 0.19
Identities = 90/385 (23%), Positives = 110/385 (28%), Gaps = 83/385 (21%)
Query: 68 GPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAG----------PG 117
GP P G+ T P G + G QR T A+ + + + PG
Sbjct: 901 GPPGPPGNPGT--PGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958
Query: 118 LDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAG 177
L P G + G L+ G G A GPR G G
Sbjct: 959 LKGFAGNPGEKGNRGVPGMPGLKGLK---------GLPGPAGPPGPRGDLGSTGNPGEPG 1009
Query: 178 ARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEK 237
R G+ S G G P G+ G R + +
Sbjct: 1010 LR---------------------GIPGSMGNMGMP-----------GSKGKRGTLGFPGR 1037
Query: 238 RACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTP--SRARPGKPA 295
PG LP L G G G R P TG LP + G+P
Sbjct: 1038 AGRPG--LPGIHGLQGDKGEPGYSEG----TRPGPPGP--TGDPGLPGDMGKKGEMGQPG 1089
Query: 296 PRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPH 355
P G PA G G G L G G G L G R P G+P
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGP------PGLPG 1143
Query: 356 FRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRC 415
F SP P G R GR P G+ P P + G Q
Sbjct: 1144 FP--GSPGP-----------MGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGA 1190
Query: 416 EGCGGGSQPFAGRRAERGKRGAGVP 440
+G G+ F G +G G P
Sbjct: 1191 KG-DRGAPGFPGLPGRKGAMGDAGP 1214
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 52.0 bits (123), Expect = 1e-06
Identities = 88/340 (25%), Positives = 113/340 (33%), Gaps = 45/340 (13%)
Query: 116 PGLDCAGSAPAPSGAQSCGG----PAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGG 171
PGL +P P G + G P PA + G + GPR G PG
Sbjct: 1139 PGLPGFPGSPGPMGIRGDQGRDGIPGPAG---------EKGETGLLRAPPGPR-GNPG-- 1186
Query: 172 RSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQ 231
+ A R P L RKG+ G + G G P PP G G R
Sbjct: 1187 -AQGAKGDRGAP-GFPGLPGRKGAMGDAGPRGPT-GIEGFPGPPGLPGAIIPGQTGNRGP 1243
Query: 232 VRGSEKRACPGSTLPPSSVLAGCVGTR-ARGHGGVQRQRFSAPSSHSTGARTLPTPSRAR 290
PG PP S + G G + + GH G + +A G P
Sbjct: 1244 PGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAP----GT 1299
Query: 291 PGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVL 350
PG P PRG G G + G G S+G +G P GV
Sbjct: 1300 PGLPGPRGDP---------GFQGFPGVKGEKGNPGFLGSIGPPGPIGPKG-----PPGVR 1345
Query: 351 RGVPHFRPLSSPAPQSPPRSPSVRAF----GPRLGAGRLSCPQAPRAAALPGIAVLAPSP 406
+ +S P PP +P GP G L P PR P P
Sbjct: 1346 GDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLG-PCGPRGKPGKDGKPGTPGP 1404
Query: 407 AHDWGGQRCEGCGG--GSQPFAGRRAERGKRGAGVPWRTQ 444
A + G + +G G GS G + +RG G+ W T+
Sbjct: 1405 AGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWTTR 1444
Score = 40.4 bits (93), Expect = 0.003
Identities = 83/338 (24%), Positives = 99/338 (29%), Gaps = 68/338 (20%)
Query: 116 PGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPR--AGTPGGGRS 173
PG P G + GP AL G G GP AG PG G
Sbjct: 562 PGRKGLDGIPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQ 621
Query: 174 SRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVR 233
G L + G G P PP G AG R ++
Sbjct: 622 GEPG------------------------LQGTQGVPGAPGPP--------GEAGPRGEL- 648
Query: 234 GSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRAR--- 290
S PG PP GH G Q S G LP P
Sbjct: 649 -SVSTPVPGPPGPPGPP----------GHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIP 697
Query: 291 ----PGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRP 346
PG P P+G +G G G G G+ + G A+A G P
Sbjct: 698 GIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGF 757
Query: 347 VGVLRGVPHFRPLSSPAPQSPPRSPSVRAF-GPRLGAGRLSCPQAPRAAALPGIAVLAPS 405
G + P P +P GPR G+ P P PG + P
Sbjct: 758 PGERGNSGEHGEIGLPGLPGLPGTPGNEGLDGPRGDPGQ---PGPPGEQGPPGRCIEGPR 814
Query: 406 PAHDWGGQRCEGCGG--GSQPFAGRRAERGKRG-AGVP 440
G Q G G G Q GRR + G +G G+P
Sbjct: 815 -----GAQGLPGLNGLKGQQ---GRRGKTGPKGDPGIP 844
Score = 37.7 bits (86), Expect = 0.022
Identities = 83/336 (24%), Positives = 106/336 (31%), Gaps = 72/336 (21%)
Query: 116 PGLDCAGSAPAPSGAQS-CGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSS 174
PG P P G G P P P A G G H G R G R
Sbjct: 176 PGAPGPQGLPGPPGFPGPVGPPGPPGFFGFP----GAMGPRGPKGHMGERVIGHKGERGV 231
Query: 175 RAGARRKTPLSLCPLKLRKGSSRR-CQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVR 233
+ P + L +R +G G G P PP G +G +
Sbjct: 232 KGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPP--------GPSGLPGESY 283
Query: 234 GSEKRACPGST----------LPPSSVLAGCVGTRA----RGHGGVQRQR-------FSA 272
GSEK A PG +P G G R G G++ Q+ F
Sbjct: 284 GSEKGA-PGDPGLQGKPGKDGVPGFPGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRG 342
Query: 273 PSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGT 332
P+ + + PG P PRG+ P +G G G+ GS R G+ + G
Sbjct: 343 PTEYYDTYQE--KGDEGTPGPPGPRGARGP---QGPSGPPGVPGSPGSSR-PGLRGAPGW 396
Query: 333 HALATRRGSRAPRPVGVLRGVPHFRPLS-------SPAPQSPP----------------- 368
L +G R RP G P + SP P PP
Sbjct: 397 PGLKGSKGERG-RPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPG 455
Query: 369 --RSPSVRAF-GPRLGAGRL--SCPQAPRAAALPGI 399
SP + GP+ G L CP P LPG+
Sbjct: 456 YLGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGL 491
Score = 34.7 bits (78), Expect = 0.19
Identities = 90/385 (23%), Positives = 110/385 (28%), Gaps = 83/385 (21%)
Query: 68 GPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAG----------PG 117
GP P G+ T P G + G QR T A+ + + + PG
Sbjct: 901 GPPGPPGNPGT--PGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIGDKGEPG 958
Query: 118 LDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAG 177
L P G + G L+ G G A GPR G G
Sbjct: 959 LKGFAGNPGEKGNRGVPGMPGLKGLK---------GLPGPAGPPGPRGDLGSTGNPGEPG 1009
Query: 178 ARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEK 237
R G+ S G G P G+ G R + +
Sbjct: 1010 LR---------------------GIPGSMGNMGMP-----------GSKGKRGTLGFPGR 1037
Query: 238 RACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTP--SRARPGKPA 295
PG LP L G G G R P TG LP + G+P
Sbjct: 1038 AGRPG--LPGIHGLQGDKGEPGYSEG----TRPGPPGP--TGDPGLPGDMGKKGEMGQPG 1089
Query: 296 PRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPH 355
P G PA G G G L G G G L G R P G+P
Sbjct: 1090 PPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGP------PGLPG 1143
Query: 356 FRPLSSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRC 415
F SP P G R GR P G+ P P + G Q
Sbjct: 1144 FP--GSPGP-----------MGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGA 1190
Query: 416 EGCGGGSQPFAGRRAERGKRGAGVP 440
+G G+ F G +G G P
Sbjct: 1191 KG-DRGAPGFPGLPGRKGAMGDAGP 1214
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 52.0 bits (123), Expect = 1e-06
Identities = 85/341 (24%), Positives = 105/341 (30%), Gaps = 84/341 (24%)
Query: 125 PAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGP--RAGTPGG-GRSSRAGARRK 181
P P G CG P P + RP G G GP R G PG G G
Sbjct: 1254 PGPKG--DCGKPGPPGSTGRP-------GAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGP 1304
Query: 182 TPLSLCPLKLRKGSS--RRCQGLGSSWGGSGTPPPP-----------------RALWNRH 222
+S LK +G++ R GL G G P PP + +
Sbjct: 1305 AGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPP 1364
Query: 223 G-----GAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRA----RGHGGVQ------- 266
G GAAG + Q + PG P S G VG RGH G
Sbjct: 1365 GPKGDPGAAGQKGQAGEKGRAGMPGG--PGKSGSMGPVGPPGPAGERGHPGAPGPSGSPG 1422
Query: 267 ---------------------RQR----FSAPSSHSTGARTLPTPSRARPGKPAPRGSAP 301
RQ F ++ T P A PG+P P G
Sbjct: 1423 LPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDG 1482
Query: 302 PARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVL--RGVPHFRPL 359
G G GL +G G+ G L +G + +G+ G+P
Sbjct: 1483 APGRPGAPGSPGLPGQIGREGRQGLP---GVRGLPGTKGEKGDIGIGIAGENGLP----- 1534
Query: 360 SSPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIA 400
P PQ PP + A GP G P P PG A
Sbjct: 1535 GPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKA 1575
Score = 47.0 bits (110), Expect = 4e-05
Identities = 83/299 (27%), Positives = 119/299 (39%), Gaps = 38/299 (12%)
Query: 153 GGGGRASHSGPRAGTPGG----GRSSRAGARRKTPLSLCPL--KLRKGSSRRCQGLGSSW 206
G G +GP AG+PG G + GA+ + P CP L+ G R G S
Sbjct: 599 GEKGNFGEAGP-AGSPGPPGPVGPAGIKGAKGE-PCEPCPALSNLQDGDVRVVALPGPS- 655
Query: 207 GGSGTPPPPRALWNRHGGAAGARAQVRGSEKRA-------CPGSTLPPSSVLAGCVGTRA 259
G G P PP G AG R ++G + A PG+T P L+G G +
Sbjct: 656 GEKGEPGPPGFGLPGKQGKAGERG-LKGQKGDAGNPGDPGTPGTTGRPG--LSGEPGVQ- 711
Query: 260 RGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARL--RGGGGGSGLTQL 317
G G + ++ ++ + T+ T RPG+P P+G P + G G GL +
Sbjct: 712 -GPAGPKGEKGDGCTACPSLQGTV-TDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGV 769
Query: 318 VGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRAFG 377
G GV G RG + P+ G+P + L P P+ PP +
Sbjct: 770 QGPPGLKGVQGEPGPPG----RGVQGPQGEPGAPGLPGIQGL--PGPRGPPGPTGEKGAQ 823
Query: 378 PRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAERGKRG 436
G + P P PG +V P P D GQ+ + G+ G R E+G+ G
Sbjct: 824 GSPGVKGATGPVGP-----PGASVSGP-PGRD--GQQGQTGLRGTPGEKGPRGEKGEPG 874
Score = 41.6 bits (96), Expect = 0.002
Identities = 119/484 (24%), Positives = 151/484 (31%), Gaps = 110/484 (22%)
Query: 34 QNPEFPQIARNDCWDRVP--RGSVTDSNHTPAGLDC-GPTRPSGSLTTRRPRDAGEAAVS 90
Q P P+ + D P +G+VTD P G P G +P G V
Sbjct: 711 QGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGVQ 770
Query: 91 GPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWD 150
GP + G R GP + AP G Q GP P +
Sbjct: 771 GPPGLKGVQGEP----GPPGRGVQGPQGE--PGAPGLPGIQGLPGPRGPPG---PTGEKG 821
Query: 151 ASGGGGRASHSGPRAGTPGG---GRSSRAGARRKTPLSLCPLKL----RKGSSRRC---- 199
A G G +GP G PG G R G + +T L P + KG C
Sbjct: 822 AQGSPGVKGATGP-VGPPGASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPS 880
Query: 200 QG--------------LGSSW-----GGSGTPPPP--------RALWNRHG--GAAGARA 230
QG +GSSW G G P PP + + +G G G A
Sbjct: 881 QGDLIFSGMPGAPGLWMGSSWQPGPQGPPGIPGPPGPPGVPGLQGVPGNNGLPGQPGLTA 940
Query: 231 QVRG----------------SEKRACPGSTL-------------PPSSVLAGCVGTRARG 261
++ +RA PG + P A C + R
Sbjct: 941 ELGSLPIEQHLLKSICGDCVQGQRAHPGYLVEKGEKGDQGIPGVPGLDNCAQCFLSLERP 1000
Query: 262 HGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGG------GGSGLT 315
R S G+ LP P PG P RG P +RG G G
Sbjct: 1001 RAEEARGDNSEGDPGCVGSPGLPGP----PGLPGQRGEEGPPGMRGSPGPPGPIGPPGFP 1056
Query: 316 QLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRA 375
VGS G+ G L +G P G P + P PP P ++
Sbjct: 1057 GAVGSPGLPGLQGERGLTGLTGDKGEPGP------PGQPGY-----PGATGPPGLPGIKG 1105
Query: 376 FGPRLG-AGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGG--GSQPFAGRRAER 432
G AG P P + LPG P PA G + +G G G Q F G+
Sbjct: 1106 ERGYTGSAGEKGEPGPPGSEGLPG----PPGPAGPRGERGPQGNSGEKGDQGFQGQPGFP 1161
Query: 433 GKRG 436
G G
Sbjct: 1162 GPPG 1165
Score = 40.0 bits (92), Expect = 0.005
Identities = 78/306 (25%), Positives = 98/306 (32%), Gaps = 59/306 (19%)
Query: 68 GPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGP-------GLDC 120
GP P G P G GP ++ + R S GP GLD
Sbjct: 1162 GPPGPPGF-----PGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDG 1216
Query: 121 AGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSG---PRA--GTPGG-GRSS 174
G + GPA L P G G+ H G P+ G PG G +
Sbjct: 1217 LDGKDGKPGLRGDPGPAGPPGLMGP------PGFKGKTGHPGLPGPKGDCGKPGPPGSTG 1270
Query: 175 RAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRG 234
R GA + P ++ P QG G G P PP A G +
Sbjct: 1271 RPGAEGE-PGAMGP-----------QGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGA 1318
Query: 235 SEKRAC---PGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARP 291
+ +R PG PP GH G + P + + P +
Sbjct: 1319 TGERGLAGLPGQPGPP-------------GHPGPPGE----PGTDGAAGKEGPPGKQGFY 1361
Query: 292 GKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRG-SRAPRPVGV- 349
G P P+G A +G G G + G SG VG A RG AP P G
Sbjct: 1362 GPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSP 1421
Query: 350 -LRGVP 354
L GVP
Sbjct: 1422 GLPGVP 1427
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 51.6 bits (122), Expect = 1e-06
Identities = 78/254 (30%), Positives = 92/254 (36%), Gaps = 33/254 (12%)
Query: 207 GGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQ 266
G PP R L + + AR RGSE R T P+ V G G R G+
Sbjct: 85 GRGAQRPPERFLPSSVSAGSAARTLRRGSEARKA--QTPRPAGVAQGSGGGGERWLQGLG 142
Query: 267 RQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAP-PARLRGGGGGSGLTQLVGSGRGSG 325
R G T P PS R P PR P PA +G GGG L G G
Sbjct: 143 PPR-------GRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGG 195
Query: 326 VTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLS---SPAPQSPPRSPSVRAF----GP 378
+ A G A G+ RPL PA S P SP +R F
Sbjct: 196 --EKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAP-SPRIRCFLAPGRS 252
Query: 379 RLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAE---RGKR 435
R+GA L+ QA AA G+ P+P C GG RRAE G R
Sbjct: 253 RVGAA-LTEEQAAGEAAARGLWRRKPAPCPRGA---CAARLGGRGTGRARRAEFRVAGPR 308
Query: 436 G------AGVPWRT 443
G +G WR+
Sbjct: 309 GVAEEAESGRGWRS 322
Score = 42.7 bits (99), Expect = 7e-04
Identities = 93/387 (24%), Positives = 129/387 (33%), Gaps = 83/387 (21%)
Query: 20 LPSLGEKAL----TALSHQNP---EFPQIARNDCWDR-VPRGSVTDSNHT----PAGLDC 67
+PSLG T LS P FP ++ R +P+ + +HT PAG
Sbjct: 29 IPSLGRNLHVSPGTVLSDLQPLGITFPVFENSERSSRHLPQAKAINPHHTASLSPAGR-- 86
Query: 68 GPTRP------------SGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAG 115
G RP S + T RR +A +A P+ + S W + G
Sbjct: 87 GAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRG 146
Query: 116 PGLDCAGSA--------------PAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHS 161
GL A PAP+G + GG ++ L W + GGG +
Sbjct: 147 RGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVL------WKGAEGGGEKGNR 200
Query: 162 GPRAGTPGG----GRSSRAGARRKTPLSLCP-----------LKLRKGSSRRCQGLGSSW 206
A G ++ G RR+ PL L P ++ R G +
Sbjct: 201 NMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTE 260
Query: 207 GGSGTPPPPRALWNRH-----GGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARG 261
+ R LW R GA AR RG+ G +AG G
Sbjct: 261 EQAAGEAAARGLWRRKPAPCPRGACAARLGGRGT------GRARRAEFRVAGPRGVAEEA 314
Query: 262 HGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPA--------RLRGGGGGSG 313
G + + + S+ S G + P P+ GK AP PP RLR G G
Sbjct: 315 ESGRGWRSWPSFSAVSGGGES-PDPAGCSRGKAAP--EEPPRVARRAHENRLRTSARGLG 371
Query: 314 LTQLVGSGRGSGVTHSVGTHALATRRG 340
G GR G + G + R G
Sbjct: 372 PGDRRGDGRFGGGRGAEGAGSGLPRGG 398
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 51.6 bits (122), Expect = 1e-06
Identities = 78/254 (30%), Positives = 92/254 (36%), Gaps = 33/254 (12%)
Query: 207 GGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQ 266
G PP R L + + AR RGSE R T P+ V G G R G+
Sbjct: 85 GRGAQRPPERFLPSSVSAGSAARTLRRGSEARKA--QTPRPAGVAQGSGGGGERWLQGLG 142
Query: 267 RQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAP-PARLRGGGGGSGLTQLVGSGRGSG 325
R G T P PS R P PR P PA +G GGG L G G
Sbjct: 143 PPR-------GRGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVLWKGAEGGG 195
Query: 326 VTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLS---SPAPQSPPRSPSVRAF----GP 378
+ A G A G+ RPL PA S P SP +R F
Sbjct: 196 --EKGNRNMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAP-SPRIRCFLAPGRS 252
Query: 379 RLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQRCEGCGGGSQPFAGRRAE---RGKR 435
R+GA L+ QA AA G+ P+P C GG RRAE G R
Sbjct: 253 RVGAA-LTEEQAAGEAAARGLWRRKPAPCPRGA---CAARLGGRGTGRARRAEFRVAGPR 308
Query: 436 G------AGVPWRT 443
G +G WR+
Sbjct: 309 GVAEEAESGRGWRS 322
Score = 42.7 bits (99), Expect = 7e-04
Identities = 93/387 (24%), Positives = 129/387 (33%), Gaps = 83/387 (21%)
Query: 20 LPSLGEKAL----TALSHQNP---EFPQIARNDCWDR-VPRGSVTDSNHT----PAGLDC 67
+PSLG T LS P FP ++ R +P+ + +HT PAG
Sbjct: 29 IPSLGRNLHVSPGTVLSDLQPLGITFPVFENSERSSRHLPQAKAINPHHTASLSPAGR-- 86
Query: 68 GPTRP------------SGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAG 115
G RP S + T RR +A +A P+ + S W + G
Sbjct: 87 GAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRG 146
Query: 116 PGLDCAGSA--------------PAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHS 161
GL A PAP+G + GG ++ L W + GGG +
Sbjct: 147 RGLSTAPPPSSLRLLPPTPRPFPPAPAGGKGEGGGKESAVL------WKGAEGGGEKGNR 200
Query: 162 GPRAGTPGG----GRSSRAGARRKTPLSLCP-----------LKLRKGSSRRCQGLGSSW 206
A G ++ G RR+ PL L P ++ R G +
Sbjct: 201 NMAAAPLGDPAREAAQAQTGLRRRRPLELVPRPALPSAPSPRIRCFLAPGRSRVGAALTE 260
Query: 207 GGSGTPPPPRALWNRH-----GGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARG 261
+ R LW R GA AR RG+ G +AG G
Sbjct: 261 EQAAGEAAARGLWRRKPAPCPRGACAARLGGRGT------GRARRAEFRVAGPRGVAEEA 314
Query: 262 HGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPA--------RLRGGGGGSG 313
G + + + S+ S G + P P+ GK AP PP RLR G G
Sbjct: 315 ESGRGWRSWPSFSAVSGGGES-PDPAGCSRGKAAP--EEPPRVARRAHENRLRTSARGLG 371
Query: 314 LTQLVGSGRGSGVTHSVGTHALATRRG 340
G GR G + G + R G
Sbjct: 372 PGDRRGDGRFGGGRGAEGAGSGLPRGG 398
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 50.1 bits (118), Expect = 4e-06
Identities = 107/376 (28%), Positives = 126/376 (33%), Gaps = 71/376 (18%)
Query: 60 HTPAGLDCGPTRPSGSLTTRRPRDAGEAAVSGP---SRQRRTSRARTALWGRRSRRAAGP 116
HTPA TR S L ++ R A + P SR RR RT L G RR
Sbjct: 39 HTPAT----GTRSSYRLLPQKGRGNLRGAPTAPVSFSRIRRNP-LRTQLSGSPPRR---- 89
Query: 117 GLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRA 176
P+ PA RRP + GGGR S PR R R
Sbjct: 90 ----------PTSVLRLASPA-GDLPRRPRPR----AGGGRHS---PRPAVGTIFRGGRK 131
Query: 177 GARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQV-RGS 235
G R+ +L R+G R Q + S G G P GGAA R +G+
Sbjct: 132 GRLREGRGALRGSGKRRGWGLRPQRVRSRLAGLGAP---------RGGAAAPRGWGGQGA 182
Query: 236 EKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPA 295
E+ LP + L G G G GG R S P + + P P R R A
Sbjct: 183 ERLGVHQPGLPTHAALRGGGGGSEGGGGGA---RPSPPRARQPPSGR-PRPRRTRLLGSA 238
Query: 296 PRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPV-GVLR-GV 353
R + A R G + S RG G SV A TR G+R R G R G
Sbjct: 239 ERHTGRAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRARGGC 298
Query: 354 PHFRPLSSPAP-------------------QSPPRSPSVRAFGPRLGAGRLSCPQAPRAA 394
R + AP P SP A L A L PQ P
Sbjct: 299 AQLRAGTPSAPGGLQDCRGRQGEENAHPFRSGAPFSPHPHASRSTLAAQLLPLPQPPPPP 358
Query: 395 ALPGIAVLAPSPAHDW 410
LAP P W
Sbjct: 359 K------LAPPPLPPW 368
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 50.1 bits (118), Expect = 4e-06
Identities = 107/376 (28%), Positives = 126/376 (33%), Gaps = 71/376 (18%)
Query: 60 HTPAGLDCGPTRPSGSLTTRRPRDAGEAAVSGP---SRQRRTSRARTALWGRRSRRAAGP 116
HTPA TR S L ++ R A + P SR RR RT L G RR
Sbjct: 39 HTPAT----GTRSSYRLLPQKGRGNLRGAPTAPVSFSRIRRNP-LRTQLSGSPPRR---- 89
Query: 117 GLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRA 176
P+ PA RRP + GGGR S PR R R
Sbjct: 90 ----------PTSVLRLASPA-GDLPRRPRPR----AGGGRHS---PRPAVGTIFRGGRK 131
Query: 177 GARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQV-RGS 235
G R+ +L R+G R Q + S G G P GGAA R +G+
Sbjct: 132 GRLREGRGALRGSGKRRGWGLRPQRVRSRLAGLGAP---------RGGAAAPRGWGGQGA 182
Query: 236 EKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPA 295
E+ LP + L G G G GG R S P + + P P R R A
Sbjct: 183 ERLGVHQPGLPTHAALRGGGGGSEGGGGGA---RPSPPRARQPPSGR-PRPRRTRLLGSA 238
Query: 296 PRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPV-GVLR-GV 353
R + A R G + S RG G SV A TR G+R R G R G
Sbjct: 239 ERHTGRAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARPTRGGARGHRRADGRARGGC 298
Query: 354 PHFRPLSSPAP-------------------QSPPRSPSVRAFGPRLGAGRLSCPQAPRAA 394
R + AP P SP A L A L PQ P
Sbjct: 299 AQLRAGTPSAPGGLQDCRGRQGEENAHPFRSGAPFSPHPHASRSTLAAQLLPLPQPPPPP 358
Query: 395 ALPGIAVLAPSPAHDW 410
LAP P W
Sbjct: 359 K------LAPPPLPPW 368
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 49.7 bits (117), Expect = 6e-06
Identities = 67/229 (29%), Positives = 85/229 (37%), Gaps = 34/229 (14%)
Query: 159 SHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSW-----GGSGTPP 213
S GPRAG GG R+ C R RC G G G G P
Sbjct: 34 SPRGPRAGGGGGDAGGGGAPVRRARGGGC--WARAYQDARCFGRGEGGDLQVSSGPGAAP 91
Query: 214 PPRALWNRHGGAAGARAQVRGSEKRACPG--STLP-PSSVLAGCVGTRARGHGGVQRQRF 270
P A AR+ + A PG LP P + + TR R +R
Sbjct: 92 PAEF-------RASARSAQGSRDVPAGPGFPPRLPRPFTSASFSNQTRLR-----RRSAS 139
Query: 271 SAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLT--QLVGSGRGSGVTH 328
+ P+ R +P + PG P G A P R RGG + L Q G GR
Sbjct: 140 ALPAPRLCPQRA--SPGCSSPGVRGPGGGASP-RARGGNAAAALAARQAAGGGRSRSAFV 196
Query: 329 SVGTHALATRRGSRAPRPVGVLRGVPH-----FRPLSSPAPQSPPRSPS 372
+ ALA + R PR G RG+ RP +P P+ PPR+P+
Sbjct: 197 AGRDAALACAQLPRRPRGAGARRGMRRRLGAGERP--APRPRGPPRAPA 243
Score = 36.2 bits (82), Expect = 0.065
Identities = 59/204 (28%), Positives = 72/204 (35%), Gaps = 53/204 (25%)
Query: 279 GARTLPTPSRARP---------GKPAPRGSAPPARLRGGGGGSGLTQ---LVGSGRGSGV 326
G++ +P P AR G A G AP R RGGG + Q G G G +
Sbjct: 22 GSQRVPQPPAARSPRGPRAGGGGGDAGGGGAPVRRARGGGCWARAYQDARCFGRGEGGDL 81
Query: 327 THSVGTHAL------ATRRGSRAPRPVGVLRGVPHF--RPLSS----------------- 361
S G A A+ R ++ R V G P RP +S
Sbjct: 82 QVSSGPGAAPPAEFRASARSAQGSRDVPAGPGFPPRLPRPFTSASFSNQTRLRRRSASAL 141
Query: 362 PAPQSPPR-------SPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQR 414
PAP+ P+ SP VR GP GA +PRA A LA A G R
Sbjct: 142 PAPRLCPQRASPGCSSPGVR--GPGGGA-------SPRARGGNAAAALAARQAAGGGRSR 192
Query: 415 CEGCGGGSQPFAGRRAERGKRGAG 438
G A + R RGAG
Sbjct: 193 SAFVAGRDAALACAQLPRRPRGAG 216
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 49.7 bits (117), Expect = 6e-06
Identities = 67/229 (29%), Positives = 85/229 (37%), Gaps = 34/229 (14%)
Query: 159 SHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSW-----GGSGTPP 213
S GPRAG GG R+ C R RC G G G G P
Sbjct: 34 SPRGPRAGGGGGDAGGGGAPVRRARGGGC--WARAYQDARCFGRGEGGDLQVSSGPGAAP 91
Query: 214 PPRALWNRHGGAAGARAQVRGSEKRACPG--STLP-PSSVLAGCVGTRARGHGGVQRQRF 270
P A AR+ + A PG LP P + + TR R +R
Sbjct: 92 PAEF-------RASARSAQGSRDVPAGPGFPPRLPRPFTSASFSNQTRLR-----RRSAS 139
Query: 271 SAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLT--QLVGSGRGSGVTH 328
+ P+ R +P + PG P G A P R RGG + L Q G GR
Sbjct: 140 ALPAPRLCPQRA--SPGCSSPGVRGPGGGASP-RARGGNAAAALAARQAAGGGRSRSAFV 196
Query: 329 SVGTHALATRRGSRAPRPVGVLRGVPH-----FRPLSSPAPQSPPRSPS 372
+ ALA + R PR G RG+ RP +P P+ PPR+P+
Sbjct: 197 AGRDAALACAQLPRRPRGAGARRGMRRRLGAGERP--APRPRGPPRAPA 243
Score = 36.2 bits (82), Expect = 0.065
Identities = 59/204 (28%), Positives = 72/204 (35%), Gaps = 53/204 (25%)
Query: 279 GARTLPTPSRARP---------GKPAPRGSAPPARLRGGGGGSGLTQ---LVGSGRGSGV 326
G++ +P P AR G A G AP R RGGG + Q G G G +
Sbjct: 22 GSQRVPQPPAARSPRGPRAGGGGGDAGGGGAPVRRARGGGCWARAYQDARCFGRGEGGDL 81
Query: 327 THSVGTHAL------ATRRGSRAPRPVGVLRGVPHF--RPLSS----------------- 361
S G A A+ R ++ R V G P RP +S
Sbjct: 82 QVSSGPGAAPPAEFRASARSAQGSRDVPAGPGFPPRLPRPFTSASFSNQTRLRRRSASAL 141
Query: 362 PAPQSPPR-------SPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQR 414
PAP+ P+ SP VR GP GA +PRA A LA A G R
Sbjct: 142 PAPRLCPQRASPGCSSPGVR--GPGGGA-------SPRARGGNAAAALAARQAAGGGRSR 192
Query: 415 CEGCGGGSQPFAGRRAERGKRGAG 438
G A + R RGAG
Sbjct: 193 SAFVAGRDAALACAQLPRRPRGAG 216
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 49.7 bits (117), Expect = 6e-06
Identities = 74/280 (26%), Positives = 96/280 (34%), Gaps = 52/280 (18%)
Query: 125 PAPSGAQSC------GGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGA 178
PAP+ A S G A A+A +P AS +S + R G GGG S AG
Sbjct: 225 PAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGG 284
Query: 179 RRKTPL---SLCPLKLRKGSSRRCQGL-------GSSWGGSGTPPPPRA--LWNRHGGAA 226
P +L L S+R QG G GG+G P A W AA
Sbjct: 285 GTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAA 344
Query: 227 GARAQVRGSEKRA-----CPGS----------TLPPSSVLAGCVGTRARGHGGVQRQRFS 271
A A G+++R+ PGS T PSS + R + +GG
Sbjct: 345 AAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTN----- 399
Query: 272 APSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVG 331
P S G + P PG+ P GS P R + GR +
Sbjct: 400 -PYSQQQGPPSGPQQGHGYPGQ--PYGSQTPQRY----------PMTMQGRAQSAMGGLS 446
Query: 332 THALATRRGSRAPRPVGVLRGVPHFRPLS-SPAPQSPPRS 370
G + P G P++ S P Q PP S
Sbjct: 447 YTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYS 486
Score = 45.4 bits (106), Expect = 1e-04
Identities = 88/344 (25%), Positives = 112/344 (32%), Gaps = 71/344 (20%)
Query: 126 APSGAQSCGGPAPA--SALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARRKTP 183
AP+ A S G P P S L++ Q GG A+ A G + AG + P
Sbjct: 6 APAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAA----AAAAERGEMKAAAGQESEGP 61
Query: 184 LSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGS 243
P L K + G GG GG GA ++ S A P
Sbjct: 62 AVGPPQPLGKELQDGAESNGGGGGGGA----------GSGGGPGAEPDLKNSNGNAGPRP 111
Query: 244 TL------PPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPR 297
L PP G GG AP HS A LP P+ G P
Sbjct: 112 ALNNNLTEPPG------------GGGGGSSDGVGAP-PHSAAA-ALPPPAY---GFGQPY 154
Query: 298 GSAPPA----------RLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPV 347
G +P A + GG GL L SG G G+ G P+
Sbjct: 155 GRSPSAVAAAAAAVFHQQHGGQQSPGLAAL-QSGGGGGLEPYAG------------PQQN 201
Query: 348 GVLRGVPHFRPLSSPAPQS--PPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPS 405
G P+ + S +S PP +P+ PR G A + P + A S
Sbjct: 202 SHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASS 261
Query: 406 PAHDWGGQRCEGCGGGSQPFAGRRAERGKRGAGVPWRTQTLSLL 449
+ + QR GGG AG G P T TL+ L
Sbjct: 262 SSSSFAQQRFGAMGGGGPSAAG-------GGTPQPTATPTLNQL 298
Score = 42.4 bits (98), Expect = 0.001
Identities = 90/364 (24%), Positives = 122/364 (33%), Gaps = 45/364 (12%)
Query: 95 QRRTSRARTALWGRRSRRAAGPGLDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGG 154
++ + R G + AA + +A S + G P P + + + GG
Sbjct: 25 KKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGG 84
Query: 155 GGRA-SHSGPRAGTPGGGRSSRAGARRKTPLSLC-PLKLRKGSSRRCQGLGSSWGGSGTP 212
GG A S GP A + AG R +L P G S G + P
Sbjct: 85 GGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALP 144
Query: 213 PPPRALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSA 272
PP +G + A A + G P G ++ G GG++
Sbjct: 145 PPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSP-----GLAALQSGGGGGLEPYAGPQ 199
Query: 273 PSSHSTGART------LPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGS--GRGS 324
+SH G P S P PA S+P RGG GSG GS S
Sbjct: 200 QNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSP----RGGTPGSGAAAAAGSKPPPSS 255
Query: 325 GVTHSVGTHALATRR----GSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSP-SVRAFGPR 379
+ S + + A +R G P G G P +P ++P SP S R +
Sbjct: 256 SASASSSSSSFAQQRFGAMGGGGPSAAG--GGTP--QPTATPTLNQLLTSPSSARGYQGY 311
Query: 380 LGAGRLSCPQ--------APRAAALPGIAVLAPSPAHDWGG--QRCE-------GCGGGS 422
G PQ A A+ G A A + A GG QR GGG
Sbjct: 312 PGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGG 371
Query: 423 QPFA 426
QP A
Sbjct: 372 QPLA 375
Score = 39.3 bits (90), Expect = 0.008
Identities = 81/359 (22%), Positives = 110/359 (30%), Gaps = 66/359 (18%)
Query: 107 GRRSRRAAGPGLDCAGSAPA--PSGAQSCGGPAPASALRRPLTQWDASGGGGRAS----- 159
G S G G +G P P S G P AL LT+ GGGG +
Sbjct: 76 GAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAP 135
Query: 160 -HSGPRAGTPGGGRSSRAGARRKTPLSLCPLKL--RKGSSRRCQGLGS--SWGGSGTPPP 214
HS A P + R + ++ + ++ ++ GL + S GG G P
Sbjct: 136 PHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPY 195
Query: 215 PRALWNRHG-------------------------GAAGARAQVRGSEKRACPGSTLPPSS 249
N H + R GS A GS PPSS
Sbjct: 196 AGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSS 255
Query: 250 VLAGCVGTR--------ARGHGGVQRQRFSAPSSHSTGA----RTLPTPSRARPGKPAPR 297
+ + A G GG P +T T P+ +R G P
Sbjct: 256 SASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGD 315
Query: 298 GSAPPARLRGGGGGSGLTQLVGS--GRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPH 355
S P + GG G G + G + + A +R AP G G
Sbjct: 316 YSGGP---QDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGG--G 370
Query: 356 FRPLS-SPAPQSPPRSPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQ 413
+PL+ +P P SP P G S Q P + P H + GQ
Sbjct: 371 GQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPS---------GPQQGHGYPGQ 420
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,352,443
Number of Sequences: 37866
Number of extensions: 1751121
Number of successful extensions: 14228
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 1288
Number of HSP's that attempted gapping in prelim test: 9654
Number of HSP's gapped (non-prelim): 4261
length of query: 466
length of database: 18,247,518
effective HSP length: 106
effective length of query: 360
effective length of database: 14,233,722
effective search space: 5124139920
effective search space used: 5124139920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.