Guide to the Human Genome
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Name: LOC100134099 Sequence: fasta or formatted (206aa) NCBI GI: 169206303
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         22           2
 C cysteine            3.4          7           1
 D aspartate           2.9          6           1
 E glutamate           4.4          9           2
 F phenylalanine       1.9          4           1
 G glycine             6.3         13           2
 H histidine           2.4          5           1
 I isoleucine          0.5          1           1
 K lysine              2.9          6           3
 L leucine            14.6         30           5
 M methionine          2.4          5           1
 N asparagine          0.5          1           1
 P proline             8.3         17           2
 Q glutamine           5.8         12           1
 R arginine            8.3         17           3
 S serine              8.3         17           2
 T threonine           3.9          8           1
 V valine             11.2         23           2
 W tryptophan          1.5          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728767             0.826   PREDICTED: hypothetical protein 
LOC728767             0.826   PREDICTED: hypothetical protein 
LOC646862             0.021   PREDICTED: hypothetical protein LOC646862 
LOC646862             0.021   PREDICTED: hypothetical protein LOC646862 
LOC646862             0.021   PREDICTED: hypothetical protein LOC646862 
TOX4                  0.018   epidermal Langerhans cell protein LCP1 
GABRE                 0.013   gamma-aminobutyric acid (GABA) A receptor, epsilon p...
LRRC37B               0.013   leucine rich repeat containing 37B 
XRCC1                 0.010   X-ray repair cross complementing protein 1 
LOC100287716          0.010   PREDICTED: hypothetical protein XP_002343734 
NPBWR2                0.010   neuropeptides B/W receptor 2 
KAT2A                 0.008   general control of amino acid synthesis 5-like 2 [H...
C15orf42              0.008   leucine-rich repeat kinase 1 
SPEG                  0.008   SPEG complex locus 
WWC3                  0.008   WWC family member 3 
HFE                   0.005   hemochromatosis protein isoform 9 precursor 
FOSL2                 0.005   FOS-like antigen 2 
TNFRSF25              0.005   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.005   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.005   tumor necrosis factor receptor superfamily, member 25...
COL23A1               0.005   collagen, type XXIII, alpha 1 
ARID1B                0.005   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.005   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.005   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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