Guide to the Human Genome
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Name: LOC100287115 Sequence: fasta or formatted (463aa) NCBI GI: 239745208
Description:

PREDICTED: hypothetical protein XP_002343389

Not currently referenced in the text

Other entries for this name:
alt mRNA {463aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         57           3
 C cysteine            1.3          6           1
 D aspartate           3.7         17           2
 E glutamate           5.0         23           1
 F phenylalanine       0.9          4           1
 G glycine            17.5         81           4
 H histidine           4.5         21           1
 I isoleucine          0.4          2           1
 K lysine              0.6          3           1
 L leucine            10.2         47           3
 M methionine          0.4          2           1
 N asparagine          0.2          1           1
 P proline             5.6         26           2
 Q glutamine           5.2         24           1
 R arginine           14.9         69           2
 S serine              3.2         15           2
 T threonine           1.5          7           1
 V valine             10.4         48           2
 W tryptophan          2.2         10           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343389 
LOC100287115          1.000   PREDICTED: hypothetical protein 
LOC100293316          0.997   PREDICTED: hypothetical protein 
LOC728767             0.033   PREDICTED: hypothetical protein 
LOC728767             0.033   PREDICTED: hypothetical protein 
TAF15                 0.027   TBP-associated factor 15 isoform 2 
TAF15                 0.027   TBP-associated factor 15 isoform 1 
LOC100291596          0.027   PREDICTED: hypothetical protein XP_002344746 
LOC100288068          0.027   PREDICTED: hypothetical protein 
LOC100288068          0.027   PREDICTED: hypothetical protein XP_002343259 
FAM98B                0.022   family with sequence similarity 98, member B isofor...
PPP1R10               0.022   protein phosphatase 1, regulatory subunit 10 
LOC100290946          0.021   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.021   PREDICTED: hypothetical protein XP_002344246 
LOC100292062          0.021   PREDICTED: hypothetical protein XP_002346314 
KRT1                  0.020   keratin 1 
MBD2                  0.020   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.020   methyl-CpG binding domain protein 2 isoform 1 
C20orf160             0.020   hypothetical protein LOC140706 
LOC100292370          0.018   PREDICTED: hypothetical protein 
HRNR                  0.018   hornerin 
KRT9                  0.018   keratin 9 
LOC100294413          0.017   PREDICTED: hypothetical protein 
LOC100292035          0.016   PREDICTED: hypothetical protein XP_002345623 
PCF11                 0.016   pre-mRNA cleavage complex II protein Pcf11 
FLG2                  0.016   filaggrin family member 2 
HNRNPA3               0.016   heterogeneous nuclear ribonucleoprotein A3 
POU3F1                0.016   POU domain, class 3, transcription factor 1 
LOC338758             0.016   PREDICTED: hypothetical protein 
LOC338758             0.016   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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