BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A1-like [Homo sapiens] (321 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 671 0.0 gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 670 0.0 gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 670 0.0 gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 571 e-163 gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 554 e-158 gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 554 e-158 gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 547 e-156 gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 394 e-110 gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 363 e-100 gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 363 e-100 gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 270 2e-72 gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 178 5e-45 gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 177 9e-45 gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 168 7e-42 gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 160 1e-39 gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 155 3e-38 gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 151 7e-37 gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 150 1e-36 gi|20373175 musashi 2 isoform a [Homo sapiens] 143 2e-34 gi|4505255 musashi 1 [Homo sapiens] 140 2e-33 gi|25121993 musashi 2 isoform b [Homo sapiens] 140 2e-33 gi|239747524 PREDICTED: similar to serum response factor-related... 132 3e-31 gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 125 4e-29 gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 125 4e-29 gi|6678271 TAR DNA binding protein [Homo sapiens] 103 3e-22 gi|195972866 keratin 10 [Homo sapiens] 79 5e-15 gi|4502847 cold inducible RNA binding protein [Homo sapiens] 78 1e-14 gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 70 2e-12 gi|55956899 keratin 9 [Homo sapiens] 70 2e-12 gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 70 2e-12 >gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A1-like [Homo sapiens] Length = 321 Score = 671 bits (1732), Expect = 0.0 Identities = 321/321 (100%), Positives = 321/321 (100%) Query: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV Sbjct: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60 Query: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP Sbjct: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120 Query: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180 Query: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYN 240 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYN Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYN 240 Query: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY 300 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY Sbjct: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY 300 Query: 301 GGSSSSSSYGSGRRFQLGNKT 321 GGSSSSSSYGSGRRFQLGNKT Sbjct: 301 GGSSSSSSYGSGRRFQLGNKT 321 >gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A1-like [Homo sapiens] Length = 321 Score = 670 bits (1728), Expect = 0.0 Identities = 320/321 (99%), Positives = 320/321 (99%) Query: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV Sbjct: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60 Query: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP Sbjct: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120 Query: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180 Query: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYN 240 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGG GGSHGGSADGYN Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN 240 Query: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY 300 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY Sbjct: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY 300 Query: 301 GGSSSSSSYGSGRRFQLGNKT 321 GGSSSSSSYGSGRRFQLGNKT Sbjct: 301 GGSSSSSSYGSGRRFQLGNKT 321 >gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A1-like [Homo sapiens] Length = 321 Score = 670 bits (1728), Expect = 0.0 Identities = 320/321 (99%), Positives = 320/321 (99%) Query: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV Sbjct: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60 Query: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP Sbjct: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120 Query: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA Sbjct: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180 Query: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYN 240 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGG GGSHGGSADGYN Sbjct: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN 240 Query: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY 300 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY Sbjct: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGY 300 Query: 301 GGSSSSSSYGSGRRFQLGNKT 321 GGSSSSSSYGSGRRFQLGNKT Sbjct: 301 GGSSSSSSYGSGRRFQLGNKT 321 >gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a [Homo sapiens] Length = 320 Score = 571 bits (1472), Expect = e-163 Identities = 278/320 (86%), Positives = 290/320 (90%), Gaps = 5/320 (1%) Query: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60 MSKSESPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60 Query: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120 Y TVEEVDAAMNARPHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120 Query: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180 LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH VNGHNCEVRKA Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 Query: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGS-----HGGS 235 LSKQ+MASA SSQR RSGSGNFGGGRGGGF GNDNFG GGNFSG GG GGS +GGS Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240 Query: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295 DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S YGGGGQYFAKP+ Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 300 Query: 296 NQGGYGGSSSSSSYGSGRRF 315 NQGGYGGSSSSSSYGSGRRF Sbjct: 301 NQGGYGGSSSSSSYGSGRRF 320 >gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo sapiens] Length = 320 Score = 554 bits (1428), Expect = e-158 Identities = 271/320 (84%), Positives = 282/320 (88%), Gaps = 5/320 (1%) Query: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60 MSKS SPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60 Query: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120 Y TVEEVDAAMN PHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH Sbjct: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120 Query: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180 LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH V GHNCEVRKA Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180 Query: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGS-----HGGS 235 L KQ+MASA SSQR R GSGNFGGGRG GF GNDNFG GGNFSG GG GGS +GGS Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240 Query: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295 DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S YGGGGQYFAKPQ Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300 Query: 296 NQGGYGGSSSSSSYGSGRRF 315 NQGGYG SSSSSSYGSGRRF Sbjct: 301 NQGGYGVSSSSSSYGSGRRF 320 >gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo sapiens] Length = 320 Score = 554 bits (1428), Expect = e-158 Identities = 271/320 (84%), Positives = 282/320 (88%), Gaps = 5/320 (1%) Query: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60 MSKS SPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV Sbjct: 1 MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60 Query: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120 Y TVEEVDAAMN PHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH Sbjct: 61 TYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120 Query: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180 LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH V GHNCEVRKA Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180 Query: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGS-----HGGS 235 L KQ+MASA SSQR R GSGNFGGGRG GF GNDNFG GGNFSG GG GGS +GGS Sbjct: 181 LPKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGS 240 Query: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295 DGYNGFGNDG NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S YGGGGQYFAKPQ Sbjct: 241 GDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQ 300 Query: 296 NQGGYGGSSSSSSYGSGRRF 315 NQGGYG SSSSSSYGSGRRF Sbjct: 301 NQGGYGVSSSSSSYGSGRRF 320 >gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b [Homo sapiens] Length = 372 Score = 547 bits (1409), Expect = e-156 Identities = 278/372 (74%), Positives = 290/372 (77%), Gaps = 57/372 (15%) Query: 1 MSKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFV 60 MSKSESPKEP+QLRKLFIGGL FET+DESLRSH EQWGTLT+CVVMRDPNT RSRGFGFV Sbjct: 1 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 60 Query: 61 PYVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHP 120 Y TVEEVDAAMNARPHK+ GRVVEPK AVSREDSQRPGA+LTVKKIFVGGIKEDTEEH Sbjct: 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHH 120 Query: 121 LRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKA 180 LRDY+EQYGK EVIEIMTD+GSGKKR FAFVTFD+HDS DKIVIQKYH VNGHNCEVRKA Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 Query: 181 LSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGS-----HGGS 235 LSKQ+MASA SSQR RSGSGNFGGGRGGGF GNDNFG GGNFSG GG GGS +GGS Sbjct: 181 LSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240 Query: 236 ADGYNGFGND-------------------------------------------------- 245 DGYNGFGND Sbjct: 241 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGG 300 Query: 246 --GKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGS 303 G NFGGG SYNDFGN NNQSSNFGPMKGGNFGG+ S YGGGGQYFAKP+NQGGYGGS Sbjct: 301 GSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGS 360 Query: 304 SSSSSYGSGRRF 315 SSSSSYGSGRRF Sbjct: 361 SSSSSYGSGRRF 372 >gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens] Length = 378 Score = 394 bits (1012), Expect = e-110 Identities = 210/344 (61%), Positives = 237/344 (68%), Gaps = 38/344 (11%) Query: 3 KSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPY 62 + PKEP+QLRKLFIGGL FET+D+SLR H E+WGTLT+CVVMRDP T RSRGFGFV Y Sbjct: 24 EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83 Query: 63 VTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLR 122 VEEVDAAM ARPHK+ GRVVEPK AVSREDS +PGA+LTVKKIFVGGIKEDTEE+ LR Sbjct: 84 SCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143 Query: 123 DYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALS 182 DY+E+YGK E IE+M D+ SGKKR FAFVTFD+HD+ DKIV+QKYH +NGHNCEV+KALS Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALS 203 Query: 183 KQKMASAPSSQRSRSGSGNFGGGRGGGF-SGNDNFGHGGNFSGCGGLG-------GSHGG 234 KQ+M SA S + GSGNF GRGG F G NFG GGNF G GG G GS+GG Sbjct: 204 KQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262 Query: 235 SADGYNGFGNDGKNFGGGSSYNDFG-------NCNNQSSNFGP-------MKGGNFGGKR 280 GYNGFG DG N+GGG Y+ G NQ +G +GGNFGG Sbjct: 263 GDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGN 322 Query: 281 SCLYGGGGQY--FAK----------PQNQGGYGGSSSSSSYGSG 312 YGGGG Y F P G +GG SS S YG G Sbjct: 323 ---YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGG 363 Score = 58.9 bits (141), Expect = 6e-09 Identities = 60/245 (24%), Positives = 100/245 (40%), Gaps = 29/245 (11%) Query: 93 EDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVT 152 E+ P ++K+F+GG+ +T + LR+++E++G +M D + + R F FVT Sbjct: 23 EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82 Query: 153 FDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGG---RGGG 209 + + D + + H V+G E ++A+S++ + + F GG Sbjct: 83 YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKK---IFVGGIKEDTEE 139 Query: 210 FSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNFGGG---SSYNDFG--NC--- 261 ++ D F G + G G+ D + Y+ NC Sbjct: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVK 199 Query: 262 ----NNQSSNFGPMKG-----GNFGGKRSCLYGGGGQYFAKPQN---QGGYGGSSSSS-- 307 + + G +G GNF G R +GGGG F + N +GGYGG S Sbjct: 200 KALSKQEMQSAGSQRGRGGGSGNFMG-RGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRG 258 Query: 308 SYGSG 312 SYG G Sbjct: 259 SYGGG 263 >gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform B1 [Homo sapiens] Length = 353 Score = 363 bits (931), Expect = e-100 Identities = 189/337 (56%), Positives = 225/337 (66%), Gaps = 40/337 (11%) Query: 8 KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67 +E +Q RKLFIGGL FET++ESLR++ EQWG LT+CVVMRDP + RSRGFGFV + ++ E Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74 Query: 68 VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127 VDAAM ARPH + GRVVEPK AV+RE+S +PGA++TVKK+FVGGIKEDTEEH LRDY+E+ Sbjct: 75 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 134 Query: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMA 187 YGK + IEI+TD+ SGKKR F FVTFD+HD DKIV+QKYH +NGHN EVRKALS+Q+M Sbjct: 135 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194 Query: 188 SAPSSQR----------SRSGSGNFGGGRGGGF-SGNDNFGH----------------GG 220 SS+ SR G GNFG G G F G+D +G GG Sbjct: 195 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 254 Query: 221 NFSGCGGLGGSHGGSADGYNGFGNDGKNFGGG-----------SSYNDFGNCNNQSSNFG 269 NF G G GG GG G G+GN G +GGG +YNDFGN N Q SN+G Sbjct: 255 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 314 Query: 270 PMKGGNFGGKRSC--LYGGGGQYFAKPQNQGGYGGSS 304 PMK GNFGG R+ YGGG GGYGG S Sbjct: 315 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 351 Score = 60.1 bits (144), Expect = 3e-09 Identities = 28/94 (29%), Positives = 53/94 (56%) Query: 3 KSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPY 62 +S P ++KLF+GG++ +T + LR + E++G + ++ D + + RGFGFV + Sbjct: 101 ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160 Query: 63 VTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQ 96 + VD + + H + G E + A+SR++ Q Sbjct: 161 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 194 >gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2 [Homo sapiens] Length = 341 Score = 363 bits (931), Expect = e-100 Identities = 189/337 (56%), Positives = 225/337 (66%), Gaps = 40/337 (11%) Query: 8 KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67 +E +Q RKLFIGGL FET++ESLR++ EQWG LT+CVVMRDP + RSRGFGFV + ++ E Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62 Query: 68 VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127 VDAAM ARPH + GRVVEPK AV+RE+S +PGA++TVKK+FVGGIKEDTEEH LRDY+E+ Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122 Query: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMA 187 YGK + IEI+TD+ SGKKR F FVTFD+HD DKIV+QKYH +NGHN EVRKALS+Q+M Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182 Query: 188 SAPSSQR----------SRSGSGNFGGGRGGGF-SGNDNFGH----------------GG 220 SS+ SR G GNFG G G F G+D +G GG Sbjct: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGG 242 Query: 221 NFSGCGGLGGSHGGSADGYNGFGNDGKNFGGG-----------SSYNDFGNCNNQSSNFG 269 NF G G GG GG G G+GN G +GGG +YNDFGN N Q SN+G Sbjct: 243 NFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 302 Query: 270 PMKGGNFGGKRSC--LYGGGGQYFAKPQNQGGYGGSS 304 PMK GNFGG R+ YGGG GGYGG S Sbjct: 303 PMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 339 Score = 60.1 bits (144), Expect = 3e-09 Identities = 28/94 (29%), Positives = 53/94 (56%) Query: 3 KSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPY 62 +S P ++KLF+GG++ +T + LR + E++G + ++ D + + RGFGFV + Sbjct: 89 ESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148 Query: 63 VTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQ 96 + VD + + H + G E + A+SR++ Q Sbjct: 149 DDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182 >gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens] Length = 305 Score = 270 bits (689), Expect = 2e-72 Identities = 148/304 (48%), Positives = 185/304 (60%), Gaps = 9/304 (2%) Query: 9 EPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEV 68 E QL KLFIGGL +TS+ LR H E +GTLT+CVV+ +P T RSR FGFV Y VEE Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61 Query: 69 DAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQY 128 DAAM A PH + G VE K AVSREDS RPGA+ VKK+FVGG+K D E L +++ Q+ Sbjct: 62 DAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQF 121 Query: 129 GKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMAS 188 G E EI+ D+ SGKKR F FV F NHD+ DK + K+H + GH EV+KA+ K+ + S Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYS 181 Query: 189 APSSQRSRSGSGNFGG-GRGGGFSGND-NFGHGGNFSGCGGLGGSHGGSADGYNGFGNDG 246 SRS G GG GRGGG N + G GG ++ GG GG GG + Y G G G Sbjct: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGG-GGGG 240 Query: 247 KNFGG---GSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGG---GGQYFAKPQNQGGY 300 ++GG G+ + FG+ + S++GPMK G GG +GG G Y GGY Sbjct: 241 SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGY 300 Query: 301 GGSS 304 GGSS Sbjct: 301 GGSS 304 Score = 62.0 bits (149), Expect = 7e-10 Identities = 31/91 (34%), Positives = 51/91 (56%) Query: 4 SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63 S P +++KLF+GGL+ + ++ L H Q+GT+ + ++ D + + RGFGFV + Sbjct: 88 SARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147 Query: 64 TVEEVDAAMNARPHKMGGRVVEPKTAVSRED 94 + D A + H + G VE K AV +ED Sbjct: 148 NHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178 Score = 60.8 bits (146), Expect = 2e-09 Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 34/223 (15%) Query: 106 KIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQ 165 K+F+GG+ T E LR ++E +G ++ + + + R F FVT+ N + D + Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67 Query: 166 KYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGC 225 H V+G+ E+++A+S++ A + + + F GG G + D H F Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKK---LFVGGLKGDVAEGDLIEHFSQF--- 121 Query: 226 GGLGGSHGGSADGYNGFGN--DGKNFGGGSSYNDFGNCNNQSS--NFGPMKGGNFGGKRS 281 G+ + + GK G G Y + ++++ F P++G K++ Sbjct: 122 --------GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173 Query: 282 C----LYGGGGQYFAKPQNQGGYGGSSSSSSYGSGRRFQLGNK 320 +Y GGG GG S SS G G R + G + Sbjct: 174 VPKEDIYSGGG------------GGGSRSSRGGRGGRGRGGGR 204 >gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b [Homo sapiens] Length = 336 Score = 178 bits (452), Expect = 5e-45 Identities = 100/279 (35%), Positives = 163/279 (58%), Gaps = 20/279 (7%) Query: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61 +K ++ K + K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV Sbjct: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125 Query: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121 + E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E + Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179 Query: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181 R+Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+ Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239 Query: 182 SKQKMASAPSSQRSRSGSGNFGG---GRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADG 238 SK++ Q+ G F G GRGGG S N N G+ N+ G G++G ++ G Sbjct: 240 SKEQY----QQQQQWGSRGGFAGRARGRGGGPSQNWNQGY-SNYWNQG--YGNYGYNSQG 292 Query: 239 YNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPM--KGGN 275 Y G+G G ++ G ++Y +G+ +NQ S +G + +GG+ Sbjct: 293 YGGYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGH 329 >gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a [Homo sapiens] Length = 355 Score = 177 bits (450), Expect = 9e-45 Identities = 100/277 (36%), Positives = 162/277 (58%), Gaps = 20/277 (7%) Query: 4 SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63 SE+ ++ K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV + Sbjct: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146 Query: 64 TVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRD 123 E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E +R+ Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200 Query: 124 YYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK 183 Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+SK Sbjct: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260 Query: 184 QKMASAPSSQRSRSGSGNFGG---GRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYN 240 ++ Q+ G F G GRGGG S N N G+ N+ G G++G ++ GY Sbjct: 261 EQY----QQQQQWGSRGGFAGRARGRGGGPSQNWNQGY-SNYWNQG--YGNYGYNSQGYG 313 Query: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPM--KGGN 275 G+G G ++ G ++Y +G+ +NQ S +G + +GG+ Sbjct: 314 GYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGH 348 Score = 55.8 bits (133), Expect = 5e-08 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%) Query: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61 +K+ KEP ++K+F+GGL +T +E +R + +G + + D TN+ RGF F+ Sbjct: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229 Query: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQR 97 + E V M + H +G E K A+S+E Q+ Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265 >gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a [Homo sapiens] Length = 332 Score = 168 bits (425), Expect = 7e-42 Identities = 91/275 (33%), Positives = 149/275 (54%), Gaps = 19/275 (6%) Query: 8 KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67 K + K+F+GGL ++TS + L+ + ++G + +C + DPNT RSRGFGF+ + Sbjct: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123 Query: 68 VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127 V+ ++ + H++ GRV++PK A++ + VKKIFVGG+ + E +R+Y+ + Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176 Query: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK---- 183 +G+ E IE+ D K+R F F+TF + K++ +K+H V+G CE++ A K Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236 Query: 184 -QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFS-GCG---GLGGSHGG---S 235 Q+ S R+R G+ GGG GGG S + N G+G ++ G G G G +GG S Sbjct: 237 QQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYS 296 Query: 236 ADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGP 270 GY G+G G ++Y +N+ P Sbjct: 297 PYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKP 331 >gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo sapiens] Length = 420 Score = 160 bits (406), Expect = 1e-39 Identities = 87/283 (30%), Positives = 145/283 (51%), Gaps = 15/283 (5%) Query: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61 SK + K + K+FIGGL ++TS + L + ++G + +C + DP T RSRGFGFV Sbjct: 136 SKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVL 195 Query: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121 + VD + + HK+ G++++PK A + + + P KK+FVGG+ DT E + Sbjct: 196 FKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPP------KKVFVGGLSPDTSEEQI 249 Query: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181 ++Y+ +G+ E IE+ D + ++R F F+T+ + + K++ +YH + CE++ A Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQ 309 Query: 182 SKQKMASAPSSQRSRSG--SGNFGGGRGGGFSGNDNFGHGGN---FSGCGGLGGSHGGSA 236 K+ Q+ G +G GG RG G N+ G N G G ++GG Sbjct: 310 PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQ 369 Query: 237 D--GYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMK--GGN 275 + GY G+ G N+G + + + Q S +G GGN Sbjct: 370 NYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGN 412 >gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b [Homo sapiens] Length = 285 Score = 155 bits (393), Expect = 3e-38 Identities = 75/215 (34%), Positives = 125/215 (58%), Gaps = 13/215 (6%) Query: 8 KEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEE 67 K + K+F+GGL ++TS + L+ + ++G + +C + DPNT RSRGFGF+ + Sbjct: 64 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123 Query: 68 VDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQ 127 V+ ++ + H++ GRV++PK A++ + VKKIFVGG+ + E +R+Y+ + Sbjct: 124 VEKVLDQKEHRLDGRVIDPKKAMAMKKDP-------VKKIFVGGLNPEATEEKIREYFGE 176 Query: 128 YGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK---- 183 +G+ E IE+ D K+R F F+TF + K++ +K+H V+G CE++ A K Sbjct: 177 FGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236 Query: 184 -QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFG 217 Q+ S R+R G+ GGG GGG G+ N+G Sbjct: 237 QQQYGSGGRGNRNRGNRGS-GGGGGGGGQGSTNYG 270 >gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d [Homo sapiens] Length = 287 Score = 151 bits (382), Expect = 7e-37 Identities = 78/218 (35%), Positives = 126/218 (57%), Gaps = 11/218 (5%) Query: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61 +K ++ K + K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV Sbjct: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125 Query: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121 + E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E + Sbjct: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179 Query: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181 R+Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+ Sbjct: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239 Query: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHG 219 SK++ Q+ + GS GR G G+ G+G Sbjct: 240 SKEQY-----QQQQQWGSRGGFAGRARGRGGDQQSGYG 272 >gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c [Homo sapiens] Length = 306 Score = 150 bits (380), Expect = 1e-36 Identities = 78/216 (36%), Positives = 125/216 (57%), Gaps = 11/216 (5%) Query: 4 SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63 SE+ ++ K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV + Sbjct: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146 Query: 64 TVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRD 123 E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E +R+ Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200 Query: 124 YYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK 183 Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+SK Sbjct: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260 Query: 184 QKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHG 219 ++ Q+ + GS GR G G+ G+G Sbjct: 261 EQY-----QQQQQWGSRGGFAGRARGRGGDQQSGYG 291 Score = 55.8 bits (133), Expect = 5e-08 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%) Query: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61 +K+ KEP ++K+F+GGL +T +E +R + +G + + D TN+ RGF F+ Sbjct: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229 Query: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQR 97 + E V M + H +G E K A+S+E Q+ Sbjct: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265 >gi|20373175 musashi 2 isoform a [Homo sapiens] Length = 328 Score = 143 bits (360), Expect = 2e-34 Identities = 105/319 (32%), Positives = 152/319 (47%), Gaps = 38/319 (11%) Query: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61 S ++S +P K+FIGGL ++TS +SLR + ++G + EC+VMRDP T RSRGFGFV Sbjct: 12 SANDSQHDPG---KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68 Query: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121 + VD + H++ + ++PK A R +P KKIFVGG+ +T + Sbjct: 69 FADPASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDV 126 Query: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181 + Y+EQ+GK E +M D+ + + R F FVTF+N D +K+ +H +N E +KA Sbjct: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186 Query: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNG 241 K+ M G G RG ++ D F G G ++G GY G Sbjct: 187 PKEVMFP----------PGTRGRARGLPYT-MDAFMLGMGMLGYPNFVATYG---RGYPG 232 Query: 242 FG-NDGKNFGG--GSSYNDFGN---CNNQSSNFGPMKGGNFGGKRS-----CLYG----- 285 F + G F G ++Y + S P + G F G S LYG Sbjct: 233 FAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQD 292 Query: 286 -GGGQYF--AKPQNQGGYG 301 G G Y A PQ G+G Sbjct: 293 SGVGNYISAASPQPGSGFG 311 >gi|4505255 musashi 1 [Homo sapiens] Length = 362 Score = 140 bits (352), Expect = 2e-33 Identities = 84/234 (35%), Positives = 123/234 (52%), Gaps = 6/234 (2%) Query: 6 SPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTV 65 SP P K+FIGGL ++T+ E LR + Q+G + EC+VMRDP T RSRGFGFV ++ Sbjct: 12 SPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 71 Query: 66 EEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYY 125 VD + H++ + ++PK A R +P KKIFVGG+ +T ++ Y+ Sbjct: 72 AGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSVNTTVEDVKQYF 129 Query: 126 EQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQK 185 EQ+GK + +M D+ + + R F FVTF++ D +K+ +H +N E +KA K+ Sbjct: 130 EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEV 189 Query: 186 MASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGY 239 M S S R RS + G G G+ G F S+ G A GY Sbjct: 190 M-SPTGSARGRSRVMPY--GMDAFMLGIGMLGYPG-FQATTYASRSYTGLAPGY 239 >gi|25121993 musashi 2 isoform b [Homo sapiens] Length = 251 Score = 140 bits (352), Expect = 2e-33 Identities = 70/182 (38%), Positives = 106/182 (58%), Gaps = 2/182 (1%) Query: 15 KLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNA 74 K+FIGGL ++TS +SLR + ++G + EC+VMRDP T RSRGFGFV + VD + Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77 Query: 75 RPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVI 134 H++ + ++PK A R +P KKIFVGG+ +T ++ Y+EQ+GK E Sbjct: 78 PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 135 Query: 135 EIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQR 194 +M D+ + + R F FVTF+N D +K+ +H +N E +KA K+ M + R Sbjct: 136 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 195 Query: 195 SR 196 +R Sbjct: 196 AR 197 Score = 63.5 bits (153), Expect = 2e-10 Identities = 32/93 (34%), Positives = 52/93 (55%) Query: 7 PKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVE 66 PK + +K+F+GGL T E ++ + EQ+G + + ++M D TNR RGFGFV + + Sbjct: 99 PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158 Query: 67 EVDAAMNARPHKMGGRVVEPKTAVSREDSQRPG 99 V+ H++ ++VE K A +E PG Sbjct: 159 VVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 191 >gi|239747524 PREDICTED: similar to serum response factor-related protein C4 [Homo sapiens] Length = 434 Score = 132 bits (333), Expect = 3e-31 Identities = 71/124 (57%), Positives = 78/124 (62%), Gaps = 13/124 (10%) Query: 197 SGSGNFGG--GRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGN---------D 245 +G GN GG G G G+SG G+G G G G +GGS YN + N Sbjct: 52 NGFGNDGGYGGGGPGYSGGSR-GYGSVGQGYGSQGSGYGGSGS-YNSYNNGGGGSFGGGS 109 Query: 246 GKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSS 305 G +FGG SYNDFGN NNQSSNFGP KGGNFGG+ S GGGGQYF KPQNQGGYGGSSS Sbjct: 110 GSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSS 169 Query: 306 SSSY 309 S Y Sbjct: 170 SRHY 173 Score = 37.4 bits (85), Expect = 0.018 Identities = 16/19 (84%), Positives = 18/19 (94%) Query: 1 MSKSESPKEPKQLRKLFIG 19 +S SESPKEPKQLRKLF+G Sbjct: 28 LSNSESPKEPKQLRKLFLG 46 >gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] Length = 378 Score = 125 bits (315), Expect = 4e-29 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 18/240 (7%) Query: 12 QLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAA 71 ++ KLF+GGL + T+ E+LRS+ Q+G + +CV+M+D TN+SRGFGFV + V Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67 Query: 72 MNARPHKMGGRVVEPKTAVSR---EDSQRP---------GAYLTVKKIFVGGIKEDTEEH 119 + +RPH + GR ++PK R + RP KIFVGGI + E Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127 Query: 120 PLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRK 179 LR+Y++++G + ++ D + R F F+TF++ S D+ V +H + G EV++ Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187 Query: 180 ALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSG------NDNFGHGGNFSGCGGLGGSHG 233 A + + AP + G++G +G G + G G +G Sbjct: 188 AEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247 >gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] Length = 407 Score = 125 bits (315), Expect = 4e-29 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 18/240 (7%) Query: 12 QLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAA 71 ++ KLF+GGL + T+ E+LRS+ Q+G + +CV+M+D TN+SRGFGFV + V Sbjct: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67 Query: 72 MNARPHKMGGRVVEPKTAVSR---EDSQRP---------GAYLTVKKIFVGGIKEDTEEH 119 + +RPH + GR ++PK R + RP KIFVGGI + E Sbjct: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127 Query: 120 PLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRK 179 LR+Y++++G + ++ D + R F F+TF++ S D+ V +H + G EV++ Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187 Query: 180 ALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSG------NDNFGHGGNFSGCGGLGGSHG 233 A + + AP + G++G +G G + G G +G Sbjct: 188 AEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247 >gi|6678271 TAR DNA binding protein [Homo sapiens] Length = 414 Score = 103 bits (256), Expect = 3e-22 Identities = 95/329 (28%), Positives = 142/329 (43%), Gaps = 60/329 (18%) Query: 16 LFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNAR 75 L + GL ++T+++ L+ + +G + V +D T S+GFGFV + E M+ R Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165 Query: 76 PHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIE 135 H + GR + K S++ P L +K+FVG ED E LR+++ QYG +V++ Sbjct: 166 -HMIDGRWCDCKLPNSKQSQDEP---LRSRKVFVGRCTEDMTEDELREFFSQYG--DVMD 219 Query: 136 IMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRS 195 + + R FAFVTF + D + + + I+ G + + A K +S R Sbjct: 220 VFIPK---PFRAFAFVTFAD-DQIAQSLCGEDLIIKGISVHISNAEPKH------NSNRQ 269 Query: 196 RSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGND-GKNFGGG-- 252 SG FGG GG F GG G S GG A G GN+ G N GGG Sbjct: 270 LERSGRFGGNPGG-------------FGNQGGFGNSRGGGA----GLGNNQGSNMGGGMN 312 Query: 253 -------------------SSYNDFGNCNNQSSNFGP----MKGGNFGGKRSCLYGGGGQ 289 SS+ G +Q + GP GN + + +G G Sbjct: 313 FGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNMQREPNQAFGSGNN 372 Query: 290 YFAKPQNQGGYGGSSSSSSYGSGRRFQLG 318 ++ N G G S+S+ GSG F G Sbjct: 373 SYS-GSNSGAAIGWGSASNAGSGSGFNGG 400 Score = 32.7 bits (73), Expect = 0.44 Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 22/254 (8%) Query: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61 + +S EP + RK+F+G + +++ LR Q+G + + + + R F FV Sbjct: 179 NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVT 233 Query: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121 + +++ ++ + G V A + +S R L F G + Sbjct: 234 FAD-DQIAQSLCGEDLIIKGISVHISNAEPKHNSNR---QLERSGRFGGNPGGFGNQGGF 289 Query: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181 + + + +QGS F F S + ++ + + L Sbjct: 290 GN-----SRGGGAGLGNNQGSNMGGGMNFGAF----SINPAMMAAAQAALQSSWGMMGML 340 Query: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYN- 240 + Q+ S PS G+ + G SGN+++ + + G S+ GS G+N Sbjct: 341 ASQQNQSGPSGNNQNQGNMQREPNQAFG-SGNNSYSGSNSGAAIGWGSASNAGSGSGFNG 399 Query: 241 GFGN--DGKNFGGG 252 GFG+ D K+ G G Sbjct: 400 GFGSSMDSKSSGWG 413 >gi|195972866 keratin 10 [Homo sapiens] Length = 584 Score = 79.0 bits (193), Expect = 5e-15 Identities = 48/121 (39%), Positives = 59/121 (48%), Gaps = 5/121 (4%) Query: 203 GGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNFGGGSSYNDFGNCN 262 GGGRGGG G G+GG SG G GG HGG G +G G G + GGGSS +G + Sbjct: 461 GGGRGGGSFGG---GYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGS 517 Query: 263 NQSSNFGPMKGGNFGGKRSCLYG--GGGQYFAKPQNQGGYGGSSSSSSYGSGRRFQLGNK 320 + + G GG GG G GGG + GGYGG SSS + S +G Sbjct: 518 SSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSGGGYGGGSSSGGHKSSSSGSVGES 577 Query: 321 T 321 + Sbjct: 578 S 578 Score = 72.8 bits (177), Expect = 4e-13 Identities = 43/109 (39%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 197 SGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNFGGGSSYN 256 SG G+ GGG GGG G+ G+GG SG G GG +GG + G+ +GGGSS Sbjct: 478 SGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGG 537 Query: 257 DFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSS 305 G SS G GG +GG S GG K + G G SSS Sbjct: 538 GGGGYGGGSSGGGSSSGGGYGGGSS----SGGH---KSSSSGSVGESSS 579 Score = 66.6 bits (161), Expect = 3e-11 Identities = 47/123 (38%), Positives = 56/123 (45%), Gaps = 16/123 (13%) Query: 191 SSQRSRSGSGNFGGG-RGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNF 249 SS R S G+ GGG GGFSG G+FS GG GGS+ GY G G F Sbjct: 32 SSLRISSSKGSLGGGFSSGGFSG-------GSFSRGSSGGGCFGGSSGGYGGLGG----F 80 Query: 250 GGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSSSSSY 309 GGGS +G+ + S G GG+FGG GGG + GG+GG Sbjct: 81 GGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSF----GGGSFGGGGFGGGGFGGGFGGGFG 136 Query: 310 GSG 312 G G Sbjct: 137 GDG 139 Score = 64.7 bits (156), Expect = 1e-10 Identities = 51/138 (36%), Positives = 59/138 (42%), Gaps = 31/138 (22%) Query: 191 SSQRSRSGSGNFG-GG---------------RGGGFSGNDNFGHGGNFSGCGGLGGSHGG 234 SS RS G G G GG GGGFS GG+FS GG GG Sbjct: 12 SSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGG--FSGGSFSRGSSGGGCFGG 69 Query: 235 SADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKP 294 S+ GY G G FGGGS +G SS+FG GG+FGG GGG + Sbjct: 70 SSGGYGGLG----GFGGGSFRGSYG-----SSSFGGSYGGSFGGGSF----GGGSFGGGS 116 Query: 295 QNQGGYGGSSSSSSYGSG 312 GG+GG +G G Sbjct: 117 FGGGGFGGGGFGGGFGGG 134 Score = 55.1 bits (131), Expect = 8e-08 Identities = 42/103 (40%), Positives = 45/103 (43%), Gaps = 16/103 (15%) Query: 188 SAPSSQRSRSGSGNFGGGRGG-----GFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGF 242 S S R SG G FGG GG GF G G G+ S G GGS GG + G F Sbjct: 53 SGGSFSRGSSGGGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSF 112 Query: 243 GNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYG 285 G G +FGGG FG FG GG FGG L G Sbjct: 113 G--GGSFGGGG----FG-----GGGFGGGFGGGFGGDGGLLSG 144 Score = 53.1 bits (126), Expect = 3e-07 Identities = 38/97 (39%), Positives = 46/97 (47%), Gaps = 20/97 (20%) Query: 197 SGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNFGGGSSYN 256 SG G+ GGG GGG S GHGG+ SG G GGS GG GY G G + GG SS Sbjct: 504 SGGGSSGGGYGGGSSSG---GHGGSSSGGYG-GGSSGGGGGGYGG----GSSGGGSSSGG 555 Query: 257 DFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAK 293 +G G + GG +S G G+ +K Sbjct: 556 GYGG------------GSSSGGHKSSSSGSVGESSSK 580 Score = 50.4 bits (119), Expect = 2e-06 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 4/86 (4%) Query: 191 SSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNFG 250 SS SG G GG GG G+ + G+GG SG G GG +GG + G G + G +G Sbjct: 503 SSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGG--GGGYGGGSSG--GGSSSGGGYG 558 Query: 251 GGSSYNDFGNCNNQSSNFGPMKGGNF 276 GGSS + ++ S KG + Sbjct: 559 GGSSSGGHKSSSSGSVGESSSKGPRY 584 Score = 47.0 bits (110), Expect = 2e-05 Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Query: 192 SQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNFGG 251 S S S G++GG GGG G +FG GG+F G G GG GG G GFG DG G Sbjct: 88 SYGSSSFGGSYGGSFGGGSFGGGSFG-GGSFGGGGFGGGGFGGGFGG--GFGGDGGLLSG 144 Query: 252 GSSYNDFGNCNNQSSNF 268 N N++ +++ Sbjct: 145 NEKVT-MQNLNDRLASY 160 Score = 41.6 bits (96), Expect = 0.001 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 3/106 (2%) Query: 210 FSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFG 269 +S + ++ + G GG G GG + G GG SS G ++ S+ G Sbjct: 5 YSSSKHYSSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGG 64 Query: 270 PMKGGNFGGKRSCLYGGGGQY---FAKPQNQGGYGGSSSSSSYGSG 312 GG+ GG GGG + + G YGGS S+G G Sbjct: 65 GCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGG 110 >gi|4502847 cold inducible RNA binding protein [Homo sapiens] Length = 172 Score = 77.8 bits (190), Expect = 1e-14 Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 16/162 (9%) Query: 106 KIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQ 165 K+FVGG+ DT E L + +YG+ + ++ D+ + + R F FVTF+N D ++ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM- 65 Query: 166 KYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGGGRG---GGFSGNDNFGHGGNF 222 +NG + + R+ Q A S RSR G GGRG GG F GG Sbjct: 66 ---AMNGKSVDGRQIRVDQ--AGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGD 120 Query: 223 SGCGG-----LGGSHGGSADGYNGFGNDG--KNFGGGSSYND 257 G GG G +GGS D Y+ G + G SY D Sbjct: 121 RGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRD 162 Score = 63.5 bits (153), Expect = 2e-10 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%) Query: 15 KLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEV-DAAMN 73 KLF+GGL F+T+++SL ++G ++E VV++D T RSRGFGFV + +++ DA M Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 74 ARPHKMGGRVVEPKTAVSREDSQRPG 99 + GR + A D++ G Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92 >gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] Length = 589 Score = 70.5 bits (171), Expect = 2e-12 Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 6/108 (5%) Query: 200 GNFGGGRGGGFSGNDNFGHGGNFSGC-----GGLGGSHGGSADGYNGFGNDGKNFGGGSS 254 G +GG RGGG+ G D G+GG+ G GG GG GG G+G D +GG S Sbjct: 466 GGYGGDRGGGYGG-DRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRS 524 Query: 255 YNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGG 302 +G S +G + G +GG RS GG + ++GGYGG Sbjct: 525 RGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGG 572 Score = 67.4 bits (163), Expect = 2e-11 Identities = 45/125 (36%), Positives = 56/125 (44%), Gaps = 19/125 (15%) Query: 196 RSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGY-----NGFGNDGKNFG 250 RSG G +GG RGGG+ G+ G+GG+ GG +GG GY G+G D +G Sbjct: 447 RSGGG-YGGDRGGGYGGDRGGGYGGD------RGGGYGGDRGGYGGDRGGGYGGDRGGYG 499 Query: 251 GGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGG--GGQYFAKPQNQGGYGGSSSSSS 308 G D G +G +GG G + YGG GG GGYGG S Sbjct: 500 G-----DRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGG 554 Query: 309 YGSGR 313 YG R Sbjct: 555 YGGDR 559 Score = 66.6 bits (161), Expect = 3e-11 Identities = 49/121 (40%), Positives = 62/121 (51%), Gaps = 10/121 (8%) Query: 196 RSGSGNFGGGR--GGGFSGN-DNFGHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNFGGG 252 RSG G +GG R GGG+SG+ G+GG+ SG GG GG GG G G G G GGG Sbjct: 419 RSGGG-YGGDRSSGGGYSGDRSGGGYGGDRSG-GGYGGDRGGGYGGDRGGGYGGDR-GGG 475 Query: 253 SSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSSSSSYGSG 312 + G ++ +G +GG +GG R G G Y ++GGYGG S YG Sbjct: 476 YGGDRGGYGGDRGGGYGGDRGG-YGGDRGGYGGDRGGYGG---DRGGYGGDRSRGGYGGD 531 Query: 313 R 313 R Sbjct: 532 R 532 Score = 62.4 bits (150), Expect = 5e-10 Identities = 71/276 (25%), Positives = 105/276 (38%), Gaps = 82/276 (29%) Query: 107 IFVGGIKEDTEEHPLRDYYEQYG--KTE------VIEIMTDQGSGKKRDFAFVTFDNHDS 158 IFV G+ E + ++++Q G KT +I + TD+ +GK + A V+FD+ S Sbjct: 233 IFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPS 292 Query: 159 TDKIVI----QKYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGG-----GRGGG 209 + +++H G+ +V A + + S R G G + G GRGG Sbjct: 293 AKAAIDWFDGKEFH---GNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQGRGGD 349 Query: 210 -----------FSGNDNF---------------------------GHGGN--FSGCGGLG 229 GN NF G+GG + G GG G Sbjct: 350 PKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRG 409 Query: 230 GSHGG-----SADGYNGFGNDGKNFGGGSSYNDFGNCNN-------QSSNFGPMKGGNFG 277 G GG S GY G + G + G S +G + + +G +GG +G Sbjct: 410 GDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYG 469 Query: 278 GKRSCLYGGGGQYFAKPQNQGGYGGSSSSSSYGSGR 313 G R YGG ++GGYGG YG R Sbjct: 470 GDRGGGYGG---------DRGGYGG-DRGGGYGGDR 495 Score = 45.4 bits (106), Expect = 7e-05 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 9/68 (13%) Query: 194 RSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNFGGG- 252 RSR G G GG G G+ G+ + G+GG+ SG GG GG GG G+G D +GG Sbjct: 523 RSRGGYGGDRGG-GSGYGGDRSGGYGGDRSG-GGYGGDRGG------GYGGDRGGYGGKM 574 Query: 253 SSYNDFGN 260 ND+ N Sbjct: 575 GGRNDYRN 582 Score = 36.2 bits (82), Expect = 0.040 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 16/76 (21%) Query: 195 SRSGSGN--FGGGRGGGFSGNDNFGHGG-NFSGCGGLGGSHGGSADGYNGFGNDGKNFGG 251 SR G N +GG +GGG G GG + G G + GS GG G+ KNFGG Sbjct: 165 SRYGEDNRGYGGSQGGGR------GRGGYDKDGRGPMTGSSGGDRGGF-------KNFGG 211 Query: 252 GSSYNDFGNCNNQSSN 267 Y + +++S N Sbjct: 212 HRDYGPRTDADSESDN 227 Score = 35.4 bits (80), Expect = 0.068 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 7/94 (7%) Query: 227 GLGGSHGGSADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGG--NFGGKRSCLY 284 G G GG Y+ +GN G G +S + G S++G G ++G S Y Sbjct: 5 GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSY 64 Query: 285 GG-----GGQYFAKPQNQGGYGGSSSSSSYGSGR 313 GG Y +P N G + SS GR Sbjct: 65 GGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGR 98 Score = 32.3 bits (72), Expect = 0.58 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 24/122 (19%) Query: 197 SGSGNFG--GGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGND-----GKNF 249 S SG++G GG +S N G G +G ++ Y+G+G G+N+ Sbjct: 2 SDSGSYGQSGGEQQSYSTYGNPGSQG-----------YGQASQSYSGYGQTTDSSYGQNY 50 Query: 250 GGGSSYND-----FGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ-NQGGYGGS 303 G SSY +G NQ + + N G++ + G Q P +Q YG Sbjct: 51 SGYSSYGQSYSQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQ 110 Query: 304 SS 305 S Sbjct: 111 DS 112 Score = 31.6 bits (70), Expect = 0.99 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 15/123 (12%) Query: 193 QRSRSGSGNFGGGRGG-------GFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGND 245 Q+S S GN G G G+ + +G N+SG G S+ S Y G+ N Sbjct: 14 QQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQS---YGGYENQ 70 Query: 246 GKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAK---PQNQGGYGG 302 ++ YN+ G N S+ +GG YG Y + Q+QG Y Sbjct: 71 KQSSYSQQPYNNQGQQQNMESS--GSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDE 128 Query: 303 SSS 305 S+ Sbjct: 129 QSN 131 >gi|55956899 keratin 9 [Homo sapiens] Length = 623 Score = 70.5 bits (171), Expect = 2e-12 Identities = 46/123 (37%), Positives = 52/123 (42%), Gaps = 13/123 (10%) Query: 188 SAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGNDGK 247 S S S G GGG GGG+ G GH G SG G GGS G G G G Sbjct: 512 SRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGG-SGGGHSGGSGGNYGGGSGSGGGSGG 570 Query: 248 NFGGGS-SYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSSS 306 +GGGS S G + S FG GG++GG G GGYGG S Sbjct: 571 GYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSG-----------GGYGGGSGK 619 Query: 307 SSY 309 SS+ Sbjct: 620 SSH 622 Score = 69.7 bits (169), Expect = 3e-12 Identities = 47/126 (37%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 195 SRSGSGNF--GGGRGGGFSGNDNF--GHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNFG 250 SR GSG GGG GGG+ G G GG++ G G GG GG G +G G+ G + G Sbjct: 489 SRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGS-G 547 Query: 251 GGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKP----QNQGGYGGSSSS 306 GG S GN S + G GG +GG G GG + ++ G YGG + Sbjct: 548 GGHSGGSGGNYGGGSGS-GGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEA 606 Query: 307 SSYGSG 312 S G G Sbjct: 607 SGSGGG 612 Score = 67.4 bits (163), Expect = 2e-11 Identities = 48/131 (36%), Positives = 58/131 (44%), Gaps = 19/131 (14%) Query: 196 RSGSG-NFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGF----GNDGKNFG 250 R GSG ++G G GG G+ +G GG+ G GG GS GGS Y G G G +G Sbjct: 478 RGGSGGSYGRGSRGGSGGS--YGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYG 535 Query: 251 GGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGS------- 303 GGS G+ GGN+GG G GG Y ++GG GGS Sbjct: 536 GGSG---GGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGF 592 Query: 304 --SSSSSYGSG 312 S SYG G Sbjct: 593 GGESGGSYGGG 603 Score = 57.8 bits (138), Expect = 1e-08 Identities = 50/134 (37%), Positives = 58/134 (43%), Gaps = 23/134 (17%) Query: 191 SSQRSRSGSGNFGGGRGGG---------FSGNDNFGHGGNFSGCGGLGGSHGGSADGYNG 241 SS SRSG G GGG G G FS + G GG FS G GG G G Sbjct: 8 SSYLSRSGGGG-GGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGG-SSRVCGRGG 65 Query: 242 FGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYG 301 G+ G ++GGGS G + SS + GG GG R GG Y + GG+G Sbjct: 66 GGSFGYSYGGGS-----GGGFSASS----LGGGFGGGSRGFGGASGGGYSSSGGFGGGFG 116 Query: 302 GSSS---SSSYGSG 312 G S YGSG Sbjct: 117 GGSGGGFGGGYGSG 130 Score = 57.4 bits (137), Expect = 2e-08 Identities = 47/132 (35%), Positives = 60/132 (45%), Gaps = 12/132 (9%) Query: 186 MASAPSSQRSRSGSGNFGGGRGGG-FSGNDNFGHGGNFSGCG-GLGGSHGGSADGYNGFG 243 + S S + S S + GGG GGG FS + +G GG+ CG G GGS G S G +G G Sbjct: 22 LGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYG-GGSSRVCGRGGGGSFGYSYGGGSGGG 80 Query: 244 NDGKNFGG--GSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGG-GQYFAKPQNQGGY 300 + GG G FG + + GG FGG +GGG G F GG+ Sbjct: 81 FSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGF------GGF 134 Query: 301 GGSSSSSSYGSG 312 GG + G G Sbjct: 135 GGFGGGAGGGDG 146 Score = 57.0 bits (136), Expect = 2e-08 Identities = 49/135 (36%), Positives = 59/135 (43%), Gaps = 26/135 (19%) Query: 188 SAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCG-GLGGSHG-----GSADGYN- 240 S SS S SG GGG GG FS + +G GG+ CG G GGS G GS G++ Sbjct: 27 SIRSSYSRFSSSG--GGGGGGRFSSSSGYG-GGSSRVCGRGGGGSFGYSYGGGSGGGFSA 83 Query: 241 -----GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQ 295 GFG + FGG S + + FG GG FGG YG G F Sbjct: 84 SSLGGGFGGGSRGFGGASG-GGYSSSGGFGGGFGGGSGGGFGGG----YGSGFGGF---- 134 Query: 296 NQGGYGGSSSSSSYG 310 GG+GG + G Sbjct: 135 --GGFGGGAGGGDGG 147 Score = 38.5 bits (88), Expect = 0.008 Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 28/102 (27%) Query: 212 GNDNF-GHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGP 270 G ++F G G GG GGS G + G G G ++GGG S Sbjct: 461 GQEDFESSGAGKIGLGGRGGS--GGSYGRGSRGGSGGSYGGGGS---------------- 502 Query: 271 MKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSSSSSYGSG 312 GG +GG G GG Y GG GS S G G Sbjct: 503 --GGGYGGGSGSRGGSGGSY-------GGGSGSGGGSGGGYG 535 Score = 37.0 bits (84), Expect = 0.023 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 1/82 (1%) Query: 229 GGSHGGSADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGG 288 GG + G G G+ G G SY + S G GG +GG G GG Sbjct: 460 GGQEDFESSGAGKIGLGGRG-GSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGG 518 Query: 289 QYFAKPQNQGGYGGSSSSSSYG 310 Y + GG GG S G Sbjct: 519 SYGGGSGSGGGSGGGYGGGSGG 540 >gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] Length = 592 Score = 70.5 bits (171), Expect = 2e-12 Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 6/108 (5%) Query: 200 GNFGGGRGGGFSGNDNFGHGGNFSGC-----GGLGGSHGGSADGYNGFGNDGKNFGGGSS 254 G +GG RGGG+ G D G+GG+ G GG GG GG G+G D +GG S Sbjct: 469 GGYGGDRGGGYGG-DRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRS 527 Query: 255 YNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGG 302 +G S +G + G +GG RS GG + ++GGYGG Sbjct: 528 RGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGG 575 Score = 67.4 bits (163), Expect = 2e-11 Identities = 45/125 (36%), Positives = 56/125 (44%), Gaps = 19/125 (15%) Query: 196 RSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGY-----NGFGNDGKNFG 250 RSG G +GG RGGG+ G+ G+GG+ GG +GG GY G+G D +G Sbjct: 450 RSGGG-YGGDRGGGYGGDRGGGYGGD------RGGGYGGDRGGYGGDRGGGYGGDRGGYG 502 Query: 251 GGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGG--GGQYFAKPQNQGGYGGSSSSSS 308 G D G +G +GG G + YGG GG GGYGG S Sbjct: 503 G-----DRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGG 557 Query: 309 YGSGR 313 YG R Sbjct: 558 YGGDR 562 Score = 66.6 bits (161), Expect = 3e-11 Identities = 49/121 (40%), Positives = 62/121 (51%), Gaps = 10/121 (8%) Query: 196 RSGSGNFGGGR--GGGFSGN-DNFGHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNFGGG 252 RSG G +GG R GGG+SG+ G+GG+ SG GG GG GG G G G G GGG Sbjct: 422 RSGGG-YGGDRSSGGGYSGDRSGGGYGGDRSG-GGYGGDRGGGYGGDRGGGYGGDR-GGG 478 Query: 253 SSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSSSSSYGSG 312 + G ++ +G +GG +GG R G G Y ++GGYGG S YG Sbjct: 479 YGGDRGGYGGDRGGGYGGDRGG-YGGDRGGYGGDRGGYGG---DRGGYGGDRSRGGYGGD 534 Query: 313 R 313 R Sbjct: 535 R 535 Score = 62.4 bits (150), Expect = 5e-10 Identities = 71/276 (25%), Positives = 105/276 (38%), Gaps = 82/276 (29%) Query: 107 IFVGGIKEDTEEHPLRDYYEQYG--KTE------VIEIMTDQGSGKKRDFAFVTFDNHDS 158 IFV G+ E + ++++Q G KT +I + TD+ +GK + A V+FD+ S Sbjct: 236 IFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPS 295 Query: 159 TDKIVI----QKYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNFGG-----GRGGG 209 + +++H G+ +V A + + S R G G + G GRGG Sbjct: 296 AKAAIDWFDGKEFH---GNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGRGGFQGRGGD 352 Query: 210 -----------FSGNDNF---------------------------GHGGN--FSGCGGLG 229 GN NF G+GG + G GG G Sbjct: 353 PKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRG 412 Query: 230 GSHGG-----SADGYNGFGNDGKNFGGGSSYNDFGNCNN-------QSSNFGPMKGGNFG 277 G GG S GY G + G + G S +G + + +G +GG +G Sbjct: 413 GDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYG 472 Query: 278 GKRSCLYGGGGQYFAKPQNQGGYGGSSSSSSYGSGR 313 G R YGG ++GGYGG YG R Sbjct: 473 GDRGGGYGG---------DRGGYGG-DRGGGYGGDR 498 Score = 45.4 bits (106), Expect = 7e-05 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 9/68 (13%) Query: 194 RSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGNDGKNFGGG- 252 RSR G G GG G G+ G+ + G+GG+ SG GG GG GG G+G D +GG Sbjct: 526 RSRGGYGGDRGG-GSGYGGDRSGGYGGDRSG-GGYGGDRGG------GYGGDRGGYGGKM 577 Query: 253 SSYNDFGN 260 ND+ N Sbjct: 578 GGRNDYRN 585 Score = 37.4 bits (85), Expect = 0.018 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 12/123 (9%) Query: 193 QRSRSGSGNFGGGRGG-------GFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGND 245 Q+S S GN G G G+ + +G N+SG G S G + Y G+ N Sbjct: 14 QQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQ 73 Query: 246 GKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAK---PQNQGGYGG 302 ++ YN+ G N S+ +GG YG Y + Q+QG Y Sbjct: 74 KQSSYSQQPYNNQGQQQNMESS--GSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDE 131 Query: 303 SSS 305 S+ Sbjct: 132 QSN 134 Score = 36.2 bits (82), Expect = 0.040 Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 16/76 (21%) Query: 195 SRSGSGN--FGGGRGGGFSGNDNFGHGG-NFSGCGGLGGSHGGSADGYNGFGNDGKNFGG 251 SR G N +GG +GGG G GG + G G + GS GG G+ KNFGG Sbjct: 168 SRYGEDNRGYGGSQGGGR------GRGGYDKDGRGPMTGSSGGDRGGF-------KNFGG 214 Query: 252 GSSYNDFGNCNNQSSN 267 Y + +++S N Sbjct: 215 HRDYGPRTDADSESDN 230 Score = 31.6 bits (70), Expect = 0.99 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 12/83 (14%) Query: 227 GLGGSHGGSADGYNGFGNDG-KNFGGGS-SYNDFGNCNNQSSNFGPMKGGNFGGKRSCLY 284 G G GG Y+ +GN G + +G S SY+ +G + S G N+ G S Y Sbjct: 5 GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSS------YGQNYSGYSS--Y 56 Query: 285 GGGGQYFAKPQNQGGYGGSSSSS 307 G ++ Q+ GGY SS Sbjct: 57 GQSQSGYS--QSYGGYENQKQSS 77 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.313 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,857,582 Number of Sequences: 37866 Number of extensions: 725876 Number of successful extensions: 10203 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 335 Number of HSP's successfully gapped in prelim test: 189 Number of HSP's that attempted gapping in prelim test: 2867 Number of HSP's gapped (non-prelim): 2613 length of query: 321 length of database: 18,247,518 effective HSP length: 102 effective length of query: 219 effective length of database: 14,385,186 effective search space: 3150355734 effective search space used: 3150355734 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.