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Search of human proteins with 169203084
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169203084 PREDICTED: hypothetical protein [Homo sapiens]
(93 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169203084 PREDICTED: hypothetical protein [Homo sapiens] 205 6e-54
gi|53759129 proline rich 13 isoform 2 [Homo sapiens] 169 4e-43
gi|8922157 proline rich 13 isoform 1 [Homo sapiens] 154 1e-38
gi|38194229 kelch-like 17 [Homo sapiens] 44 3e-05
gi|33356148 formin-like 1 [Homo sapiens] 40 4e-04
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 39 7e-04
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 39 0.001
gi|150378503 leiomodin 2 (cardiac) [Homo sapiens] 39 0.001
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 38 0.002
gi|7706501 WW domain binding protein 11 [Homo sapiens] 38 0.002
gi|24497513 homeobox A3 isoform a [Homo sapiens] 37 0.003
gi|13562112 homeobox A3 isoform a [Homo sapiens] 37 0.003
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 37 0.004
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 37 0.004
gi|6382071 diaphanous 2 isoform 12C [Homo sapiens] 37 0.004
gi|5803003 diaphanous 2 isoform 156 [Homo sapiens] 37 0.004
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 37 0.004
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 37 0.004
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 37 0.004
gi|210032580 SET domain containing 1B [Homo sapiens] 37 0.004
gi|29789008 Huntingtin interacting protein C isoform 2 [Homo sap... 37 0.004
gi|72534686 Huntingtin interacting protein C isoform 1 [Homo sap... 37 0.004
gi|56549696 E1A binding protein p400 [Homo sapiens] 36 0.008
gi|54860079 nadrin isoform 1 [Homo sapiens] 36 0.008
gi|54860105 nadrin isoform 2 [Homo sapiens] 36 0.008
gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo sa... 36 0.008
gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo sa... 36 0.008
gi|118344450 cell death inducing protein [Homo sapiens] 36 0.008
gi|157168329 formin 1 [Homo sapiens] 35 0.010
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 35 0.010
>gi|169203084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 205 bits (522), Expect = 6e-54
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MWNPNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVTADKKMQ 60
MWNPNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVTADKKMQ
Sbjct: 1 MWNPNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVTADKKMQ 60
Query: 61 NKMKKAHKKMHKHQKHGKHSSSSFSSSSSSDSD 93
NKMKKAHKKMHKHQKHGKHSSSSFSSSSSSDSD
Sbjct: 61 NKMKKAHKKMHKHQKHGKHSSSSFSSSSSSDSD 93
>gi|53759129 proline rich 13 isoform 2 [Homo sapiens]
Length = 98
Score = 169 bits (428), Expect = 4e-43
Identities = 82/99 (82%), Positives = 83/99 (83%), Gaps = 7/99 (7%)
Query: 1 MWNPNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVTADKKMQ 60
MWNPNAGG PHPVPQPGYPGCQ GP+ PPYPPPAPGIPPVN LAPGMV PAV DKKMQ
Sbjct: 1 MWNPNAGGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQ 60
Query: 61 NKMKKAHKKMHKHQ------KHGKHSSSSFSSSSSSDSD 93
KMKKAHKKMHKHQ KHGKHSSSS SSSSSSDSD
Sbjct: 61 KKMKKAHKKMHKHQKHHKYHKHGKHSSSS-SSSSSSDSD 98
>gi|8922157 proline rich 13 isoform 1 [Homo sapiens]
Length = 148
Score = 154 bits (389), Expect = 1e-38
Identities = 76/93 (81%), Positives = 77/93 (82%), Gaps = 7/93 (7%)
Query: 7 GGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVTADKKMQNKMKKA 66
GG PHPVPQPGYPGCQ GP+ PPYPPPAPGIPPVN LAPGMV PAV DKKMQ KMKKA
Sbjct: 57 GGPPHPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQKKMKKA 116
Query: 67 HKKMHKHQ------KHGKHSSSSFSSSSSSDSD 93
HKKMHKHQ KHGKHSSSS SSSSSSDSD
Sbjct: 117 HKKMHKHQKHHKYHKHGKHSSSS-SSSSSSDSD 148
>gi|38194229 kelch-like 17 [Homo sapiens]
Length = 642
Score = 43.9 bits (102), Expect = 3e-05
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 14 PQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVTADKKMQNKMKKAHKKMHKH 73
P+ G PG GP PP PPP P P P RPA + +Q ++ H H
Sbjct: 15 PEHGSPG---PGPEAPPPPPPQPPAPEAERTRPRQARPAAPMEGAVQLLSREGHSVAHNS 71
Query: 74 QKH 76
++H
Sbjct: 72 KRH 74
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 40.0 bits (92), Expect = 4e-04
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 10 PHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNL-LAPGMVRPAVTADKKMQNKMK 64
P P P P PG P PP PPP PG PP L + P V A K +Q K +
Sbjct: 586 PPPPPPPPPPGTDGPVPPPPPPPPPPPGGPPDALGRRDSELGPGVKAKKPIQTKFR 641
Score = 37.7 bits (86), Expect = 0.002
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 4 PNAGGAPHPVPQ-PGYPGCQSSGPHLPPYPPPAPGIP 39
P G AP P P PG P Q + P PP PP PG P
Sbjct: 536 PAPGAAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGSP 572
Score = 30.0 bits (66), Expect = 0.42
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 4 PNAGGAPHP-----VPQPGY-PGCQSSGPHLPPYPPPAPGIP 39
P+ G AP P P P P + + PP PPP PG+P
Sbjct: 511 PSGGDAPTPGVPTGSPSPDLAPAAEPAPGAAPPPPPPLPGLP 552
>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
sapiens]
Length = 1484
Score = 39.3 bits (90), Expect = 7e-04
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 2 WNPNAGGAPHPVPQPGY--PGCQSSGPHLPPYPPPAP 36
W +G PH VP GY P C+S+G L P P PAP
Sbjct: 843 WTEQSGFLPHGVPSSGYMRPPCKSAGHRLQPPPVPAP 879
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 38.9 bits (89), Expect = 0.001
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 57 KKMQNKMKKAHKKMHKHQKHGKHSSSSFSSSSSSDSD 93
KK K KK K KH+KH SSSS SSSSSS ++
Sbjct: 236 KKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTE 272
Score = 36.6 bits (83), Expect = 0.004
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 48 MVRPAVTADKKMQNKMKKAHKKMHKHQKHGKHSSSSFSSSSSSDS 92
++R +KK + K +K K KH KH SSS SSSSSS S
Sbjct: 224 LLRKLDRLEKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSS 268
>gi|150378503 leiomodin 2 (cardiac) [Homo sapiens]
Length = 547
Score = 38.5 bits (88), Expect = 0.001
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 10 PHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVTADKKMQNKMKKAHKK 69
P P P P P Q P PP PPP P + +++ +A + +QN KK K
Sbjct: 424 PPPPPPPPPPSSQRLPPPPPPPPPPLPEKKLITRNIAEVIKQQESAQRALQNGQKKKKGK 483
Query: 70 MHKHQ-----KHGKHSSSSFSSSSSSDS 92
K Q K K+S S DS
Sbjct: 484 KVKKQPNSILKEIKNSLRSVQEKKMEDS 511
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAV 53
P AGG P P P P P SSG + P PP P + P LAPG R A+
Sbjct: 386 PGAGGPPMPPPPPPPPPPPSSG-NGPAPPPLPPALVPAGGLAPGGGRGAL 434
Score = 30.8 bits (68), Expect = 0.25
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 10 PHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPA 52
P P P PG G P PP PPP+ G P P + PA
Sbjct: 380 PLPPPPPGAGGPPMPPPPPPPPPPPSSGNGPAPPPLPPALVPA 422
Score = 30.0 bits (66), Expect = 0.42
Identities = 18/36 (50%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIP 39
P GG P P P P SGP LPP PP A G P
Sbjct: 362 PGRGGPPPPPP----PATGRSGP-LPPPPPGAGGPP 392
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPY-PPPAPGIPPVNLLAPGMVRPAV 53
P A G P+P P PG + GP +PP PPP P N AP + PA+
Sbjct: 372 PPATGRSGPLPPPP-PG--AGGPPMPPPPPPPPPPPSSGNGPAPPPLPPAL 419
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 37.7 bits (86), Expect = 0.002
Identities = 25/50 (50%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 4 PNAGGAPHPVPQPGYP-GCQSSGPHLPPYPPPA-PGIPPVNLLAPGMVRP 51
P P P P PG P G GP P PPPA PGIPP PGM+RP
Sbjct: 464 PGRPPGPPPGPPPGLPPGPPPRGPP-PRLPPPAPPGIPPPR---PGMMRP 509
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 8 GAPHPVPQPGYPGCQSSGPH-LPPYPPPA--PGIPP 40
GAP + PG PG + P LPP PPP PG PP
Sbjct: 437 GAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPP 472
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 10 PHPVPQPGYPGCQSSGPH--LPPYPPPAPGIPPVNLLAPGM 48
P P+ P P + GP LPP PP PG PP L PGM
Sbjct: 410 PPPLGPPPAPPLRPPGPPTGLPPGPP--PGAPPF-LRPPGM 447
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 37.0 bits (84), Expect = 0.003
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 3 NPNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVTADKKMQNK 62
+P A P PQP P Q P PPP+ PP N A PA A + N
Sbjct: 91 HPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQN--ASNNPTPANAAKSPLLNS 148
Query: 63 MKKAHKKMHKHQKHGKHSSSSFSSSSSS 90
A K++ K + ++ +SSSSS
Sbjct: 149 PTVA-KQIFPWMKESRQNTKQKTSSSSS 175
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 37.0 bits (84), Expect = 0.003
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 3 NPNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVTADKKMQNK 62
+P A P PQP P Q P PPP+ PP N A PA A + N
Sbjct: 91 HPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQN--ASNNPTPANAAKSPLLNS 148
Query: 63 MKKAHKKMHKHQKHGKHSSSSFSSSSSS 90
A K++ K + ++ +SSSSS
Sbjct: 149 PTVA-KQIFPWMKESRQNTKQKTSSSSS 175
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 36.6 bits (83), Expect = 0.004
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 5 NAGGAPHPVPQPGYPGCQSSGPHLP-----PYPPPAPGIPPVNLLAPGMVRP 51
+AG P P P PG G P LP P PPP PG P + PGM P
Sbjct: 688 SAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGPGIPPPPPGMGMP 739
Score = 33.5 bits (75), Expect = 0.038
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPP 40
P G P P P +PG GP +PP PPP G+PP
Sbjct: 709 PPLPGGPGIPPPPPFPG----GPGIPP-PPPGMGMPP 740
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIP 39
P G + +P P PG ++ P PP PPP P +P
Sbjct: 578 PLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLP 613
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAP---GIPPVNLLAPG 47
P G A P P P PG S+G +PP PPP P G+PP PG
Sbjct: 671 PLPGSARIPPPPPPLPG--SAG--IPPPPPPLPGEAGMPPPPPPLPG 713
Score = 29.6 bits (65), Expect = 0.55
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAP---GIPPVNLLAPG 47
P P P P PG +PP PPP P GIPP PG
Sbjct: 661 PGGTAIPPPPPLPG-------SARIPPPPPPLPGSAGIPPPPPPLPG 700
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Query: 12 PVPQPGYPGCQSSGPHLPPYPPPAPG 37
P P PG P PP PPP PG
Sbjct: 589 PPPAPGDSTTPPPPPPPPPPPPPLPG 614
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 36.6 bits (83), Expect = 0.004
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 5 NAGGAPHPVPQPGYPGCQSSGPHLP-----PYPPPAPGIPPVNLLAPGMVRP 51
+AG P P P PG G P LP P PPP PG P + PGM P
Sbjct: 697 SAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGPGIPPPPPGMGMP 748
Score = 33.5 bits (75), Expect = 0.038
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPP 40
P G P P P +PG GP +PP PPP G+PP
Sbjct: 718 PPLPGGPGIPPPPPFPG----GPGIPP-PPPGMGMPP 749
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIP 39
P G + +P P PG ++ P PP PPP P +P
Sbjct: 587 PLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLP 622
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAP---GIPPVNLLAPG 47
P G A P P P PG S+G +PP PPP P G+PP PG
Sbjct: 680 PLPGSARIPPPPPPLPG--SAG--IPPPPPPLPGEAGMPPPPPPLPG 722
Score = 29.6 bits (65), Expect = 0.55
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAP---GIPPVNLLAPG 47
P P P P PG +PP PPP P GIPP PG
Sbjct: 670 PGGTAIPPPPPLPG-------SARIPPPPPPLPGSAGIPPPPPPLPG 709
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/26 (46%), Positives = 12/26 (46%)
Query: 12 PVPQPGYPGCQSSGPHLPPYPPPAPG 37
P P PG P PP PPP PG
Sbjct: 598 PPPAPGDSTTPPPPPPPPPPPPPLPG 623
>gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]
Length = 1096
Score = 36.6 bits (83), Expect = 0.004
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 17/73 (23%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHL--------PPYPPPAPGIPPVNLLAPGMVRPAVTA 55
P GGAP P P P PG P PP PPP G+PP P ++
Sbjct: 570 PLPGGAPLPPPPPPLPGMMGIPPPPPPPLLFGGPPPPPPLGGVPP---------PPGISL 620
Query: 56 DKKMQNKMKKAHK 68
+ K KK +K
Sbjct: 621 NLPYGMKQKKMYK 633
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 5 NAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPG---IPPVNLLAPGMV 49
++ G P P P PG GP PP PP PG +PP PGM+
Sbjct: 544 SSSGIPGPPAAPPLPGV---GPPPPPPAPPLPGGAPLPPPPPPLPGMM 588
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 8 GAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAP 46
G P P P P PG P PPP P +P + + P
Sbjct: 561 GPPPPPPAPPLPGGA-------PLPPPPPPLPGMMGIPP 592
>gi|5803003 diaphanous 2 isoform 156 [Homo sapiens]
Length = 1101
Score = 36.6 bits (83), Expect = 0.004
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 17/73 (23%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHL--------PPYPPPAPGIPPVNLLAPGMVRPAVTA 55
P GGAP P P P PG P PP PPP G+PP P ++
Sbjct: 570 PLPGGAPLPPPPPPLPGMMGIPPPPPPPLLFGGPPPPPPLGGVPP---------PPGISL 620
Query: 56 DKKMQNKMKKAHK 68
+ K KK +K
Sbjct: 621 NLPYGMKQKKMYK 633
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 5 NAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPG---IPPVNLLAPGMV 49
++ G P P P PG GP PP PP PG +PP PGM+
Sbjct: 544 SSSGIPGPPAAPPLPGV---GPPPPPPAPPLPGGAPLPPPPPPLPGMM 588
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 8 GAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAP 46
G P P P P PG P PPP P +P + + P
Sbjct: 561 GPPPPPPAPPLPGGA-------PLPPPPPPLPGMMGIPP 592
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 36.6 bits (83), Expect = 0.004
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 20/92 (21%)
Query: 4 PNAGGAPHPVPQP-GYPGCQSSGPHLPPYPPPAPG-IPPVN-LLAPGMVRPAVTADKKMQ 60
P++ +PHP P P QS P L P P+P IPPV L++ P +
Sbjct: 797 PSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSS 856
Query: 61 NKMKKAHKKMHKHQKHGKHSSSSFSSSSSSDS 92
+ SSSSFSSSSSS S
Sbjct: 857 SS-----------------SSSSFSSSSSSSS 871
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 36.6 bits (83), Expect = 0.004
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 20/92 (21%)
Query: 4 PNAGGAPHPVPQP-GYPGCQSSGPHLPPYPPPAPG-IPPVN-LLAPGMVRPAVTADKKMQ 60
P++ +PHP P P QS P L P P+P IPPV L++ P +
Sbjct: 998 PSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSS 1057
Query: 61 NKMKKAHKKMHKHQKHGKHSSSSFSSSSSSDS 92
+ SSSSFSSSSSS S
Sbjct: 1058 SS-----------------SSSSFSSSSSSSS 1072
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 36.6 bits (83), Expect = 0.004
Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 20/92 (21%)
Query: 4 PNAGGAPHPVPQP-GYPGCQSSGPHLPPYPPPAPG-IPPVN-LLAPGMVRPAVTADKKMQ 60
P++ +PHP P P QS P L P P+P IPPV L++ P +
Sbjct: 998 PSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSS 1057
Query: 61 NKMKKAHKKMHKHQKHGKHSSSSFSSSSSSDS 92
+ SSSSFSSSSSS S
Sbjct: 1058 SS-----------------SSSSFSSSSSSSS 1072
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 36.6 bits (83), Expect = 0.004
Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 10 PHPVPQPGYPGCQSSGPHLPPYPP--PAPGIPPVNLLAPGMVRP 51
P P PQPG+P P PP PP PA +PP L AP V P
Sbjct: 695 PPPPPQPGFPMPPPLPPPPPPPPPAHPAVTVPPPPLPAPPGVPP 738
Score = 32.7 bits (73), Expect = 0.065
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 10 PHPVPQPGYPGCQSSGPHLPPYP--PPAPGIPPVNLLAPGM 48
P P P P +P P LP P PP P +PP+ PG+
Sbjct: 712 PPPPPPPAHPAVTVPPPPLPAPPGVPPPPILPPLPPFPPGL 752
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 14 PQPGYPGCQSSGPHLPPYPPPAPGIP-----PVNLLAPGMVRPAVT 54
P PG+P P PP PPP PG P P P PAVT
Sbjct: 683 PPPGFPPL----PPPPPPPPPQPGFPMPPPLPPPPPPPPPAHPAVT 724
Score = 29.3 bits (64), Expect = 0.71
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 20 GCQSSGPHLPPYPPPAPGIPPV 41
G + P LPP PPP P PPV
Sbjct: 1535 GIPAPPPPLPPQPPPPPPPPPV 1556
Score = 28.9 bits (63), Expect = 0.93
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 12 PVPQPGYPGCQSSGPHLPPYPPPAPGIPPV 41
P P P PG P LPP PP PG+ PV
Sbjct: 727 PPPLPAPPGVPPP-PILPPLPPFPPGLFPV 755
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 22/84 (26%)
Query: 9 APHPVPQPGYPGCQSSGPHLPPYPPP----------------------APGIPPVNLLAP 46
AP P P P P PP PPP +PG P +
Sbjct: 431 APAPPPLPPAEPLAKEKPGTPPGPPPPDTNSMELGGRPTFGWSPEPCDSPGTPTLESSPA 490
Query: 47 GMVRPAVTADKKMQNKMKKAHKKM 70
G +P + D +++ +K+ K+
Sbjct: 491 GPEKPHDSLDSRIEMLLKEQRTKL 514
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 13/40 (32%)
Query: 12 PVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRP 51
P+P P P PP PPP P PP PG P
Sbjct: 680 PLPPP---------PGFPPLPPPPPPPPP----QPGFPMP 706
>gi|29789008 Huntingtin interacting protein C isoform 2 [Homo
sapiens]
Length = 858
Score = 36.6 bits (83), Expect = 0.004
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 8 GAPHPVPQPGYPGCQSSGPHLPPYPP-------PAPGIPPVNLLAPGMVRP 51
G P P P G P P +PP PP P G PP PGMV P
Sbjct: 5 GIPPPFPPMGLPPMSQRPPAIPPMPPGILPPMLPPMGAPPPLTQIPGMVPP 55
>gi|72534686 Huntingtin interacting protein C isoform 1 [Homo
sapiens]
Length = 871
Score = 36.6 bits (83), Expect = 0.004
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 8 GAPHPVPQPGYPGCQSSGPHLPPYPP-------PAPGIPPVNLLAPGMVRP 51
G P P P G P P +PP PP P G PP PGMV P
Sbjct: 11 GIPPPFPPMGLPPMSQRPPAIPPMPPGILPPMLPPMGAPPPLTQIPGMVPP 61
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 35.8 bits (81), Expect = 0.008
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 10 PHPVPQPGYPGCQ--SSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVT 54
P P+PQP G Q + P + P P P P P + AP +PA+T
Sbjct: 2521 PPPLPQPQAAGSQPPAGPPAVQPQPQPQPQTQPQPVQAPAKAQPAIT 2567
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 35.8 bits (81), Expect = 0.008
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVTA 55
PN+ G P+P+ P G + H PP P P PP+ P + P A
Sbjct: 730 PNSQGPPNPMALPSEHGLEQPS-HTPPQTPTPPSTPPLGKQNPSLPAPQTLA 780
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 14 PQPGYPGCQSSG------PHLPPYPPPAPGIPP 40
P PG+PG QSS P L P PP PP
Sbjct: 646 PPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPP 678
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGI 38
P+AG P P P P + P +PP PP PG+
Sbjct: 789 PHAGTLPRPRPVPK----PRNRPSVPP-PPQPPGV 818
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 35.8 bits (81), Expect = 0.008
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVTA 55
PN+ G P+P+ P G + H PP P P PP+ P + P A
Sbjct: 652 PNSQGPPNPMALPSEHGLEQPS-HTPPQTPTPPSTPPLGKQNPSLPAPQTLA 702
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 14 PQPGYPGCQSSG------PHLPPYPPPAPGIPP 40
P PG+PG QSS P L P PP PP
Sbjct: 568 PPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPP 600
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGI 38
P+AG P P P P + P +PP PP PG+
Sbjct: 711 PHAGTLPRPRPVPK----PRNRPSVPP-PPQPPGV 740
>gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo
sapiens]
Length = 783
Score = 35.8 bits (81), Expect = 0.008
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 12 PVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVTADKK 58
P P P +P Q P P PP P +PP N+ P ++ V D +
Sbjct: 393 PPPPPSHPASQPPLPASHPSQPPVPSLPPRNIKPPFDLKSPVNEDNQ 439
>gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo
sapiens]
Length = 829
Score = 35.8 bits (81), Expect = 0.008
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 12 PVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPAVTADKK 58
P P P +P Q P P PP P +PP N+ P ++ V D +
Sbjct: 393 PPPPPSHPASQPPLPASHPSQPPVPSLPPRNIKPPFDLKSPVNEDNQ 439
>gi|118344450 cell death inducing protein [Homo sapiens]
Length = 208
Score = 35.8 bits (81), Expect = 0.008
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 11 HPVPQPGY--PGCQSSGPHLPPYPPPAPG-IPPVNLLAPGMVRP 51
HP+PQPG+ P + G ++PP P PG PP+ PG P
Sbjct: 59 HPMPQPGFIPPHMSADGTYMPPGFYPPPGPHPPMGYYPPGPYTP 102
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 14 PQPGYPGCQSS-GPHLPPYPPPAPGIPPVNLLAPGMVRPAVTAD 56
P PG P + GP PPY PP +P PG + P ++AD
Sbjct: 38 PPPGMPLPPADIGP--PPYEPPGHPMP-----QPGFIPPHMSAD 74
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 35.4 bits (80), Expect = 0.010
Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 10 PHPVPQPGYPGCQSSGPHLPPYPPPAPGIP-PVNLLAPGMVRPA 52
P P P P P S+GP PP PPP P P P N PG PA
Sbjct: 682 PPPPPPPPLPPPSSAGPPPPPPPPPLPNSPAPPN---PGGPPPA 722
Score = 34.3 bits (77), Expect = 0.022
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 14 PQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAP 46
P P P S+GP LPP PPP P +PP + P
Sbjct: 667 PAPPMPPV-SAGPPLPPPPPPPPPLPPPSSAGP 698
Score = 33.5 bits (75), Expect = 0.038
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAP 46
P++ G P P P P P S P P PPPAP PP L P
Sbjct: 693 PSSAGPPPPPPPPPLPN--SPAPPNPGGPPPAP--PPPGLAPP 731
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIP 39
P + G P P P P P PP PPP P +P
Sbjct: 673 PVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPPPLP 708
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 35.4 bits (80), Expect = 0.010
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 5 NAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPPVNLLAPGMVRPA 52
NAGG P P + GP PP PPP PG PP L P V A
Sbjct: 158 NAGGPPAP---------PAGGPPPPPGPPPPPGPPPPPGLPPSGVPAA 196
Score = 34.3 bits (77), Expect = 0.022
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 11/37 (29%)
Query: 4 PNAGGAPHPVPQPGYPGCQSSGPHLPPYPPPAPGIPP 40
P AGG P P GP PP PPP PG+PP
Sbjct: 165 PPAGGPPPP-----------PGPPPPPGPPPPPGLPP 190
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.128 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,098,399
Number of Sequences: 37866
Number of extensions: 408542
Number of successful extensions: 8058
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 537
Number of HSP's that attempted gapping in prelim test: 3813
Number of HSP's gapped (non-prelim): 3570
length of query: 93
length of database: 18,247,518
effective HSP length: 64
effective length of query: 29
effective length of database: 15,824,094
effective search space: 458898726
effective search space used: 458898726
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.