Guide to the Human Genome
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Name: PRR13 Sequence: fasta or formatted (98aa) NCBI GI: 53759129
Description:

proline rich 13 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {148aa} proline rich 13 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          5           1
 C cysteine            1.0          1           1
 D aspartate           3.1          3           1
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine             9.2          9           2
 H histidine           9.2          9           2
 I isoleucine          2.0          2           1
 K lysine             13.3         13           2
 L leucine             2.0          2           1
 M methionine          5.1          5           1
 N asparagine          3.1          3           1
 P proline            21.4         21           3
 Q glutamine           4.1          4           1
 R arginine            0.0          0           0
 S serine             11.2         11          10
 T threonine           0.0          0           0
 V valine              5.1          5           1
 W tryptophan          1.0          1           1
 Y tyrosine            4.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline rich 13 isoform 2 
PRR13                 0.919   proline rich 13 isoform 1 
LOC100129201          0.727   PREDICTED: hypothetical protein 
SETD1B                0.126   SET domain containing 1B 
DIAPH1                0.111   diaphanous 1 isoform 2 
DIAPH1                0.111   diaphanous 1 isoform 1 
VASP                  0.111   vasodilator-stimulated phosphoprotein 
FHDC1                 0.101   FH2 domain containing 1 
DIAPH2                0.101   diaphanous 2 isoform 12C 
DIAPH2                0.101   diaphanous 2 isoform 156 
FMN1                  0.096   formin 1 
FMNL1                 0.096   formin-like 1 
CPSF6                 0.091   cleavage and polyadenylation specific factor 6, 68 ...
RBM12                 0.091   RNA binding motif protein 12 
RBM12                 0.091   RNA binding motif protein 12 
WBP11                 0.091   WW domain binding protein 11 
MAPK1IP1L             0.086   MAPK-interacting and spindle-stabilizing protein [Ho...
CIR1                  0.086   CBF1 interacting corepressor 
DAAM1                 0.081   dishevelled-associated activator of morphogenesis 1 ...
SF3B4                 0.081   splicing factor 3b, subunit 4 
KLHL17                0.081   kelch-like 17 
WASL                  0.076   Wiskott-Aldrich syndrome gene-like protein 
WAS                   0.076   Wiskott-Aldrich syndrome protein 
HOXA3                 0.076   homeobox A3 isoform a 
HOXA3                 0.076   homeobox A3 isoform a 
WASF2                 0.076   WAS protein family, member 2 
FMN2                  0.076   formin 2 
GRINA                 0.076   glutamate receptor, ionotropic, N-methyl D-aspartate...
GRINA                 0.076   glutamate receptor, ionotropic, N-methyl D-aspartate...
CCNK                  0.076   cyclin K isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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